Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009230

Physical Location & Seq

Genomic Coordinates Forward (+)

4198895 .. 4203558

Gene Structure 4664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G085600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGACCAAATATTCCCCTTCCTTTGCGCCACCTCTCTCCTCTCTCTGGAAAACTTCCGACTTAGACTCTCCAATGGCGGCCGAGGACCACAATGGCGGTCGATCGGCGCTGATCTTCCTCGGGACCGGGTGCTCGAGCGCCGTCCCCAACGCAATGTGCCTGATCCAGCCCTCCAATCCCTGCGACGTATGCCCTCAGGCGCTCTCCACCCCCCCGGACCAAAACCCTAATTACCGGTGCAATACATCGCTTTTGATTGATTATTGCCCAAGTGATGGCAAGCACAGTTATATATTGATTGATGTTGGAAAGACTTTCAGGGAGCAAGTGATTCGATGGTTCACTCGCTATAAGATTCCTAGAATTGATTCTATTATTTTGACTCATGAACACGCTGATGCAGTTCTTGGTCTGGATGATATACGTGCTGTTCAACCATATAGTCCCACAAATGACATTGACCCTACTCCCATCTACCTAACTCAGTATGCAATGGAGAGCATTGCAGAGAAATTTTCTTACTTGGTGAAGAAAAAAGTTGAGGAAGGAAAAGAACTGAGACGAGTAGCACAGCTTGACTGGAGGATAATTGAGGAGAATTGTGAAACATCGTTTGTTGCATCTGGCCTACAATTTATTCCTTTGCCAGTGATGCATGGGGAAGATTATGTCTGTTTGGGTTATCTATTTGGTGAAAGATGTAGAATAGCTTACATATCTGATGTGTCTCGCTTTCCTGCAAGCACAGAACATGTCATTTCAAAAGATGGAGCTGGGCAGTTGGATCTTCTTATCTTGGACACTCTATACAAGACTGGATCCCATAATGTTCACCTTTGCCTCCCACAGACTCTTGAAGCTGTGAAGAGGATTTGTCCAAAACAAGCCTTGTTAATTGGAATGACTCATCAATTTGATCACCACAAGGACAATAAATTTCTTACGGAATGGTCTGAGAGGGAAGGGATACCAGTGCAGCTTGCGCATGATGGTTTGAGAATCCCCATAGACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00440 map00440

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

339

Amino Acids

37.96

Weight (kDa)

5.63

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30300 AT1G30300 AT1G30300 AT1G30300
fragaria_vesca	FvH4_3g05040 FvH4_3g05040 FvH4_3g05040
malus_domestica	MD05G1279500.v1.1 MD10G1258200.v1.1
prunus_persica	Prupe.4G085600_v2.0.a1
pyrus_communis	pycom10g21450
rosa_chinensis	RchiOBHm_Chr5g0014931
rosa_laevigata	RLG00000032151
rosa_multiflora	Rmu_sc0013610.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061650
rosa_rugosa	Rorug05G0021500 Rorug05G0021600
rosa_samantha	Rh5AG117200 Rh5BG114200 Rh5CG125700 Rh5DG113600
rosa_wichuraiana	Rw5G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	984
AccB7I	CCANNNNNTGG	1 cut(s)	275
AciI	CCGC	2 cut(s)	77, 96
AclWI	GGATC	4 cut(s)	157, 792, 813, 826
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	512, 935
AfiI	CCNNNNNNNGG	2 cut(s)	45, 275
AflIII	ACRYGT	1 cut(s)	751
AgeI	ACCGGT	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	434, 762, 857
AluBI	AGCT	5 cut(s)	574, 710, 773, 860, 979
AluI	AGCT	5 cut(s)	574, 710, 773, 860, 979
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	2 cut(s)	553, 732
AlwI	GGATC	4 cut(s)	157, 792, 813, 826
Ama87I	CYCGRG	2 cut(s)	119, 133
AoxI	GGCC	2 cut(s)	78, 625
ApeKI	GCWGC	1 cut(s)	976
ApoI	RAATTY	2 cut(s)	512, 935
AsiGI	ACCGGT	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	367
AspLEI	GCGC	5 cut(s)	28, 109, 140, 202, 985
AspS9I	GGNCC	3 cut(s)	85, 123, 217
AsuC2I	CCSGG	2 cut(s)	127, 215
AsuHPI	GGTGA	4 cut(s)	538, 704, 824, 911
AvaI	CYCGRG	2 cut(s)	119, 133
AvaII	GGWCC	3 cut(s)	85, 123, 217
AxyI	CCTNAGG	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	988
BccI	CCATC	5 cut(s)	269, 330, 479, 761, 983
BceAI	ACGGC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciVI	GTATCC	1 cut(s)	960
BclI	TGATCA	1 cut(s)	916
BcnI	CCSGG	2 cut(s)	127, 215
BcoDI	GTCTC	2 cut(s)	553, 732
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	3 cut(s)	110, 141, 203
BfuI	GTATCC	1 cut(s)	960
BisI	GCNGC	2 cut(s)	78, 977
BlsI	GCNGC	2 cut(s)	79, 978
Bme1390I	CCNGG	2 cut(s)	127, 215
Bme18I	GGWCC	3 cut(s)	85, 123, 217
BmeT110I	CYCGRG	2 cut(s)	119, 133
BmgT120I	GGNCC	3 cut(s)	85, 123, 217
BmiI	GGNNCC	2 cut(s)	124, 820
BmrFI	CCNGG	2 cut(s)	127, 215
BmsI	GCATC	3 cut(s)	388, 629, 642
BpmI	CTGGAG	1 cut(s)	601
BpuMI	CCSGG	2 cut(s)	127, 215
BsaAI	YACGTR	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	81, 118, 213
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 275
Bse118I	RCCGGY	1 cut(s)	234
Bse1I	ACTGG	4 cut(s)	584, 647, 820, 971
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	3 cut(s)	159, 498, 501
BseDI	CCNNGG	3 cut(s)	81, 118, 213
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	2 cut(s)	45, 275
BseMI	GCAATG	3 cut(s)	159, 498, 501
BseMII	CTCAG	4 cut(s)	209, 497, 548, 945
BseNI	ACTGG	4 cut(s)	584, 647, 820, 971
BseRI	GAGGAG	2 cut(s)	28, 608
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	988
BseYI	CCCAGC	1 cut(s)	773
BsgI	GTGCAG	1 cut(s)	995
Bsh1285I	CGRYCG	3 cut(s)	81, 100, 104
BshFI	GGCC	2 cut(s)	80, 627
BshTI	ACCGGT	1 cut(s)	234
BsiEI	CGRYCG	3 cut(s)	81, 100, 104
BsiHKAI	GWGCWC	1 cut(s)	134
BsiHKCI	CYCGRG	2 cut(s)	119, 133
BsiSI	CCGG	3 cut(s)	126, 215, 235
BslFI	GGGAC	3 cut(s)	128, 136, 429
BslI	CCNNNNNNNGG	2 cut(s)	45, 275
BsmAI	GTCTC	2 cut(s)	553, 732
BsmBI	CGTCTC	1 cut(s)	553
BsmFI	GGGAC	3 cut(s)	128, 136, 429
BsnI	GGCC	2 cut(s)	80, 627
BsoBI	CYCGRG	2 cut(s)	119, 133
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	6 cut(s)	101, 111, 162, 784, 818, 916
BspACI	CCGC	2 cut(s)	77, 96
BspANI	GGCC	2 cut(s)	80, 627
BspCNI	CTCAG	4 cut(s)	208, 496, 549, 946
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	124, 820
BspPI	GGATC	4 cut(s)	157, 792, 813, 826
BsrDI	GCAATG	3 cut(s)	159, 498, 501
BsrFI	RCCGGY	1 cut(s)	234
BsrI	ACTGG	4 cut(s)	584, 647, 820, 971
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	3 cut(s)	81, 118, 213
BssMI	GATC	6 cut(s)	101, 111, 162, 784, 818, 916
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	860
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	281, 742, 981
BstDEI	CTNAG	5 cut(s)	61, 195, 483, 557, 954
BstF5I	GGATG	1 cut(s)	421
BstH2I	RGCGCY	3 cut(s)	110, 141, 203
BstHHI	GCGC	5 cut(s)	28, 109, 140, 202, 985
BstKTI	GATC	6 cut(s)	104, 114, 165, 787, 821, 919
BstMAI	GTCTC	2 cut(s)	553, 732
BstMBI	GATC	6 cut(s)	101, 111, 162, 784, 818, 916
BstMCI	CGRYCG	3 cut(s)	81, 100, 104
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 652, 982
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	2 cut(s)	125, 213
BstV1I	GCAGC	1 cut(s)	988
BstX2I	RGATCY	2 cut(s)	784, 818
BstYI	RGATCY	2 cut(s)	784, 818
BstZI	CGGCCG	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	960
BsuRI	GGCC	2 cut(s)	80, 627
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	654, 978
Cac8I	GCNNGC	3 cut(s)	281, 742, 981
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	5 cut(s)	28, 109, 140, 202, 985
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	3 cut(s)	85, 123, 217
CspAI	ACCGGT	1 cut(s)	234
CviAII	CATG	4 cut(s)	386, 656, 752, 986
CviJI	RGCY	9 cut(s)	80, 169, 574, 627, 710, 773, 860, 887, 979
CviKI_1	RGCY	9 cut(s)	80, 169, 574, 627, 710, 773, 860, 887, 979
DdeI	CTNAG	5 cut(s)	61, 195, 483, 557, 954
DpnI	GATC	6 cut(s)	103, 113, 164, 786, 820, 918
DpnII	GATC	6 cut(s)	101, 111, 162, 784, 818, 916
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	860
EarI	CTCTTC	1 cut(s)	860
EclXI	CGGCCG	1 cut(s)	78
Eco47I	GGWCC	3 cut(s)	85, 123, 217
Eco52I	CGGCCG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	195
Eco88I	CYCGRG	2 cut(s)	119, 133
EcoT22I	ATGCAT	1 cut(s)	657
Esp3I	CGTCTC	1 cut(s)	553
FaeI	CATG	4 cut(s)	389, 659, 755, 989
FaqI	GGGAC	3 cut(s)	128, 136, 429
FatI	CATG	4 cut(s)	385, 655, 751, 985
FbaI	TGATCA	1 cut(s)	916
Fnu4HI	GCNGC	2 cut(s)	78, 977
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	2 cut(s)	78, 977
FspBI	CTAG	1 cut(s)	360
FspI	TGCGCA	1 cut(s)	984
GlaI	GCGC	5 cut(s)	27, 108, 139, 201, 984
GluI	GCNGC	2 cut(s)	78, 977
GsaI	CCCAGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	601
HaeII	RGCGCY	3 cut(s)	110, 141, 203
HaeIII	GGCC	2 cut(s)	80, 627
HapII	CCGG	3 cut(s)	126, 215, 235
HhaI	GCGC	5 cut(s)	28, 109, 140, 202, 985
Hin1II	CATG	4 cut(s)	389, 659, 755, 989
Hin6I	GCGC	5 cut(s)	26, 107, 138, 200, 983
HinP1I	GCGC	5 cut(s)	26, 107, 138, 200, 983
HinfI	GANTC	8 cut(s)	65, 331, 355, 368, 382, 850, 904, 999
HpaII	CCGG	3 cut(s)	126, 215, 235
HphI	GGTGA	4 cut(s)	538, 704, 824, 911
Hpy166II	GTNNAC	2 cut(s)	342, 832
Hpy188I	TCNGA	3 cut(s)	58, 721, 955
Hpy188III	TCNNGA	5 cut(s)	46, 121, 386, 413, 854
Hpy8I	GTNNAC	2 cut(s)	342, 832
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	3 cut(s)	27, 539, 956
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	2 cut(s)	186, 424
HpyCH4V	TGCA	8 cut(s)	240, 401, 491, 506, 620, 655, 740, 976
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 652, 982
HpyF3I	CTNAG	5 cut(s)	61, 195, 483, 557, 954
HpySE526I	ACGT	2 cut(s)	186, 424
Hsp92II	CATG	4 cut(s)	389, 659, 755, 989
HspAI	GCGC	5 cut(s)	26, 107, 138, 200, 983
Ksp22I	TGATCA	1 cut(s)	916
Kzo9I	GATC	6 cut(s)	101, 111, 162, 784, 818, 916
LmnI	GCTCC	2 cut(s)	322, 770
Lsp1109I	GCAGC	1 cut(s)	988
LweI	GCATC	3 cut(s)	388, 629, 642
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	2 cut(s)	186, 424
MalI	GATC	6 cut(s)	103, 113, 164, 786, 820, 918
MboI	GATC	6 cut(s)	101, 111, 162, 784, 818, 916
MboII	GAAGA	5 cut(s)	106, 541, 674, 779, 877
MflI	RGATCY	2 cut(s)	784, 818
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	9 cut(s)	229, 363, 512, 588, 598, 632, 894, 911, 935
MlyI	GAGTC	4 cut(s)	59, 376, 844, 898
MmeI	TCCRAC	3 cut(s)	81, 286, 762
Mph1103I	ATGCAT	1 cut(s)	657
MroXI	GAANNNNTTC	1 cut(s)	367
MseI	TTAA	1 cut(s)	893
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	3 cut(s)	126, 215, 235
MspR9I	CCNGG	2 cut(s)	127, 215
MwoI	GCNNNNNNNGC	3 cut(s)	189, 652, 982
NciI	CCSGG	2 cut(s)	127, 215
NdeII	GATC	6 cut(s)	101, 111, 162, 784, 818, 916
NlaIII	CATG	4 cut(s)	389, 659, 755, 989
NlaIV	GGNNCC	2 cut(s)	124, 820
NmeAIII	GCCGAG	1 cut(s)	106
NsbI	TGCGCA	1 cut(s)	984
NsiI	ATGCAT	1 cut(s)	657
NspI	RCATGY	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	133
PagI	TCATGA	1 cut(s)	385
PciI	ACATGT	1 cut(s)	751
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	4 cut(s)	331, 355, 368, 999
PflMI	CCANNNNNTGG	1 cut(s)	275
PinAI	ACCGGT	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	79, 978
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	4 cut(s)	59, 376, 844, 898
PpsI	GAGTC	4 cut(s)	59, 376, 844, 898
Ppu21I	YACGTR	1 cut(s)	425
PscI	ACATGT	1 cut(s)	751
PspFI	CCCAGC	1 cut(s)	773
PspN4I	GGNNCC	2 cut(s)	124, 820
PspPI	GGNCC	3 cut(s)	85, 123, 217
PspXI	VCTCGAGB	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	784, 818
PvuI	CGATCG	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	893
SatI	GCNGC	2 cut(s)	78, 977
Sau3AI	GATC	6 cut(s)	101, 111, 162, 784, 818, 916
Sau96I	GGNCC	3 cut(s)	85, 123, 217
SchI	GAGTC	4 cut(s)	59, 376, 844, 898
ScrFI	CCNGG	2 cut(s)	127, 215
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	3 cut(s)	388, 629, 642
Sfr274I	CTCGAG	1 cut(s)	133
SinI	GGWCC	3 cut(s)	85, 123, 217
SlaI	CTCGAG	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	9 cut(s)	229, 363, 512, 588, 598, 632, 894, 911, 935
SsiI	CCGC	2 cut(s)	77, 96
SspI	AATATT	1 cut(s)	11
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	125, 213
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	2 cut(s)	189, 427
TaqI	TCGA	3 cut(s)	100, 134, 334
TasI	AATT	9 cut(s)	229, 363, 512, 588, 598, 632, 894, 911, 935
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	4 cut(s)	331, 355, 368, 999
Tru1I	TTAA	1 cut(s)	893
Tru9I	TTAA	1 cut(s)	893
TscAI	CASTG	2 cut(s)	654, 978
TseI	GCWGC	1 cut(s)	976
TspDTI	ATGAA	1 cut(s)	402
TspGWI	ACGGA	1 cut(s)	959
TspRI	CASTG	2 cut(s)	654, 978
Van91I	CCANNNNNTGG	1 cut(s)	275
VpaK11BI	GGWCC	3 cut(s)	85, 123, 217
XapI	RAATTY	2 cut(s)	512, 935
XceI	RCATGY	1 cut(s)	755
XhoI	CTCGAG	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.