Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009230

Physical Location & Seq

Genomic Coordinates Reverse (-)

41369893 .. 41374243

Gene Structure 4351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1279500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGGCCGAGAACCACCACGGCGGTCGATCGGCGCTGATCTTCCTCGGCACCGGGTGCTCGAGCGCCGTCCCCAACGCAATGTGCCTGATCCAGCCCTCCGATCCTTGCCACGTCTGCGCCCAGGCGCTCTCCATCCCCCCGGACCAAAACCCTAATTACCGGTGCAATACGTCGCTTTTGATTGATCATTGCGGAAGCGATGGTAACCACAGCTACATATTGATCGATGTCGGAAAGACGTTCAGGGAGCAAGTGCTTCGCTGGTTCACTCGCTATAAGATTCCCAGAGTTGATTCTATTATTTTGACTCATGAACATGCTGATGCAGTTCTTGGTCTGGATGATATACGTGCCGTTCAACCATTTAGTCCCACAAATGACATTGATCCTACTCCCATCTACCTAAGTCATTATGCAATGGAGAGCATTGCAGTGAAATTTCCTTACTTGGTTAAGAAAAAACTTGCTGAAGGACAAGAAGTGAGACGGGTAGCACAACTTGACTGGAGGATAATTGAGGAGAGTATTGAAACACCGTTTCTTGCGTCAGGCCTACAATTTGTTCCTTTGCCAGTAATGCATGGGGAAGATTATATCTGTTTGGGTTTTCTATTTGGTGAAAGATGTAGAATAGCTTATATATCTGATGTTTCACGCTTTCCTGCAAGCACAGAACATGTTATTTCAAAAGATGGAGCTGGACAGTTGGATCTTCTTATCTTGGACACACTATACAGGACTGGATCCCATAATGTTCACCTTTGCCTCCCACAGACTCTTGAAGCTGTGAAGAGGATTTGTCCAAAAAAAACCCTTTTAATTGGAATGACTCATGAGTTTGATCACCACGTAGACAATAAGTTTCTTAAGGAATGGTCTGAGAGGGATTCAAGTGCAGCTTGCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00440 map00440

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

304

Amino Acids

33.88

Weight (kDa)

5.99

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anti-Pycsar_Apyc1	PF23023	70 - 262	9e-08	Anti-Pycsar protein Apyc1
Lactamase_B_2	PF12706	74 - 276	3.7e-23	Beta-lactamase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30300 AT1G30300 AT1G30300 AT1G30300
fragaria_vesca	FvH4_3g05040 FvH4_3g05040 FvH4_3g05040
malus_domestica	MD05G1279500.v1.1 MD10G1258200.v1.1
prunus_persica	Prupe.4G085600_v2.0.a1
pyrus_communis	pycom10g21450
rosa_chinensis	RchiOBHm_Chr5g0014931
rosa_laevigata	RLG00000032151
rosa_multiflora	Rmu_sc0013610.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061650
rosa_rugosa	Rorug05G0021500 Rorug05G0021600
rosa_samantha	Rh5AG117200 Rh5BG114200 Rh5CG125700 Rh5DG113600
rosa_wichuraiana	Rw5G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	907
AccB1I	GGYRCC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	855
AciI	CCGC	3 cut(s)	5, 24, 195
AclWI	GGATC	6 cut(s)	85, 98, 383, 720, 741, 754
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	492
AdeI	CACNNNGTG	1 cut(s)	57
AflII	CTTAAG	1 cut(s)	869
AflIII	ACRYGT	1 cut(s)	679
AgeI	ACCGGT	1 cut(s)	162
AgsI	TTSAA	5 cut(s)	362, 533, 690, 785, 894
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	5 cut(s)	216, 638, 701, 788, 902
AluI	AGCT	5 cut(s)	216, 638, 701, 788, 902
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	6 cut(s)	85, 98, 383, 720, 741, 754
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	2 cut(s)	6, 553
ApeKI	GCWGC	1 cut(s)	899
ApoI	RAATTY	1 cut(s)	440
AsiGI	ACCGGT	1 cut(s)	162
AspLEI	GCGC	5 cut(s)	37, 68, 122, 130, 908
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	2 cut(s)	55, 143
AsuHPI	GGTGA	3 cut(s)	632, 752, 839
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	746
BanI	GGYRCC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	4 cut(s)	143, 197, 407, 689
BceAI	ACGGC	3 cut(s)	37, 53, 341
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	2 cut(s)	187, 844
BcnI	CCSGG	2 cut(s)	55, 143
BcoDI	GTCTC	1 cut(s)	481
BfoI	RGCGCY	3 cut(s)	38, 69, 131
BfrI	CTTAAG	1 cut(s)	869
BisI	GCNGC	2 cut(s)	6, 900
BlsI	GCNGC	2 cut(s)	7, 901
Bme1390I	CCNGG	3 cut(s)	55, 125, 143
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	52, 748
BmrFI	CCNGG	3 cut(s)	55, 125, 143
BmsI	GCATC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	529
BpuMI	CCSGG	2 cut(s)	55, 143
Bsa29I	ATCGAT	1 cut(s)	228
BsaAI	YACGTR	2 cut(s)	353, 853
BsaJI	CCNNGG	4 cut(s)	19, 46, 123, 141
BsaWI	WCCGGW	1 cut(s)	162
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	3 cut(s)	512, 575, 748
Bse3DI	GCAATG	4 cut(s)	87, 190, 426, 429
BseBI	CCWGG	1 cut(s)	125
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	4 cut(s)	19, 46, 123, 141
BseGI	GGATG	2 cut(s)	135, 349
BseMI	GCAATG	4 cut(s)	87, 190, 426, 429
BseMII	CTCAG	1 cut(s)	873
BseNI	ACTGG	3 cut(s)	512, 575, 748
BseRI	GAGGAG	1 cut(s)	536
BseX3I	CGGCCG	1 cut(s)	6
Bsh1285I	CGRYCG	3 cut(s)	9, 28, 32
BshFI	GGCC	2 cut(s)	8, 555
BshNI	GGYRCC	1 cut(s)	50
BshTI	ACCGGT	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	228
BsiEI	CGRYCG	3 cut(s)	9, 28, 32
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	3 cut(s)	54, 143, 163
BslFI	GGGAC	2 cut(s)	56, 357
BsmAI	GTCTC	1 cut(s)	481
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	2 cut(s)	56, 357
BsnI	GGCC	2 cut(s)	8, 555
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	62
BspACI	CCGC	3 cut(s)	5, 24, 195
BspANI	GGCC	2 cut(s)	8, 555
BspCNI	CTCAG	1 cut(s)	874
BspDI	ATCGAT	1 cut(s)	228
BspHI	TCATGA	2 cut(s)	313, 835
BspLI	GGNNCC	2 cut(s)	52, 748
BspPI	GGATC	6 cut(s)	85, 98, 383, 720, 741, 754
BspT107I	GGYRCC	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	869
BsrDI	GCAATG	4 cut(s)	87, 190, 426, 429
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	512, 575, 748
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	4 cut(s)	19, 46, 123, 141
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	540, 708
Bst6I	CTCTTC	1 cut(s)	788
BstAFI	CTTAAG	1 cut(s)	869
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstBAI	YACGTR	2 cut(s)	353, 853
BstC8I	GCNNGC	2 cut(s)	670, 904
BstDEI	CTNAG	2 cut(s)	407, 882
BstDSI	CCRYGG	1 cut(s)	19
BstEII	GGTNACC	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	135, 349
BstH2I	RGCGCY	3 cut(s)	38, 69, 131
BstHHI	GCGC	5 cut(s)	37, 68, 122, 130, 908
BstMAI	GTCTC	1 cut(s)	481
BstMCI	CGRYCG	3 cut(s)	9, 28, 32
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 117, 580, 905
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	2 cut(s)	323, 683
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	3 cut(s)	53, 123, 141
BstX2I	RGATCY	2 cut(s)	712, 746
BstYI	RGATCY	2 cut(s)	712, 746
BstZI	CGGCCG	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	8, 555
BsuTUI	ATCGAT	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	216
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	135, 349
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	670, 904
CciI	TCATGA	2 cut(s)	313, 835
CfoI	GCGC	5 cut(s)	37, 68, 122, 130, 908
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	228
CseI	GACGC	1 cut(s)	537
CspAI	ACCGGT	1 cut(s)	162
CviAII	CATG	6 cut(s)	314, 320, 584, 680, 836, 909
CviJI	RGCY	8 cut(s)	8, 97, 216, 555, 638, 701, 788, 902
CviKI_1	RGCY	8 cut(s)	8, 97, 216, 555, 638, 701, 788, 902
DdeI	CTNAG	2 cut(s)	407, 882
DraIII	CACNNNGTG	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
EclXI	CGGCCG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	145
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	61
Eco91I	GGTNACC	1 cut(s)	206
EcoO65I	GGTNACC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	6 cut(s)	317, 323, 587, 683, 839, 912
FalI	AAGNNNNNCTT	1 cut(s)	886
FaqI	GGGAC	2 cut(s)	56, 357
FatI	CATG	6 cut(s)	313, 319, 583, 679, 835, 908
FbaI	TGATCA	2 cut(s)	187, 844
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	2 cut(s)	6, 900
FokI	GGATG	2 cut(s)	122, 356
Fsp4HI	GCNGC	2 cut(s)	6, 900
FspI	TGCGCA	1 cut(s)	907
GlaI	GCGC	5 cut(s)	36, 67, 121, 129, 907
GluI	GCNGC	2 cut(s)	6, 900
GsuI	CTGGAG	1 cut(s)	529
HaeII	RGCGCY	3 cut(s)	38, 69, 131
HaeIII	GGCC	2 cut(s)	8, 555
HapII	CCGG	3 cut(s)	54, 143, 163
HgaI	GACGC	1 cut(s)	537
HhaI	GCGC	5 cut(s)	37, 68, 122, 130, 908
Hin1II	CATG	6 cut(s)	317, 323, 587, 683, 839, 912
Hin6I	GCGC	5 cut(s)	35, 66, 120, 128, 906
HinP1I	GCGC	5 cut(s)	35, 66, 120, 128, 906
HinfI	GANTC	6 cut(s)	283, 296, 310, 778, 832, 890
HpaII	CCGG	3 cut(s)	54, 143, 163
HphI	GGTGA	3 cut(s)	632, 752, 839
Hpy166II	GTNNAC	3 cut(s)	270, 760, 856
Hpy188I	TCNGA	4 cut(s)	103, 236, 649, 883
Hpy188III	TCNNGA	4 cut(s)	314, 341, 782, 836
Hpy8I	GTNNAC	3 cut(s)	270, 760, 856
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	2 cut(s)	540, 708
HpyCH4IV	ACGT	5 cut(s)	114, 173, 242, 352, 852
HpyCH4V	TGCA	7 cut(s)	168, 329, 419, 434, 583, 668, 899
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 117, 580, 905
HpyF3I	CTNAG	2 cut(s)	407, 882
HpySE526I	ACGT	5 cut(s)	114, 173, 242, 352, 852
Hsp92II	CATG	6 cut(s)	317, 323, 587, 683, 839, 912
HspAI	GCGC	5 cut(s)	35, 66, 120, 128, 906
Ksp22I	TGATCA	2 cut(s)	187, 844
LmnI	GCTCC	2 cut(s)	250, 698
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	5 cut(s)	114, 173, 242, 352, 852
MaeIII	GTNAC	1 cut(s)	206
MboII	GAAGA	4 cut(s)	34, 602, 707, 805
MflI	RGATCY	2 cut(s)	712, 746
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	5 cut(s)	157, 440, 516, 560, 822
MlyI	GAGTC	3 cut(s)	304, 772, 826
MmeI	TCCRAC	2 cut(s)	214, 690
MnlI	CCTC	7 cut(s)	56, 109, 504, 514, 779, 789, 879
Mph1103I	ATGCAT	1 cut(s)	585
MseI	TTAA	3 cut(s)	456, 821, 870
MslI	CAYNNNNRTG	3 cut(s)	318, 324, 434
MspCI	CTTAAG	1 cut(s)	869
MspI	CCGG	3 cut(s)	54, 143, 163
MspR9I	CCNGG	3 cut(s)	55, 125, 143
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	4 cut(s)	57, 117, 580, 905
NciI	CCSGG	2 cut(s)	55, 143
NlaIII	CATG	6 cut(s)	317, 323, 587, 683, 839, 912
NlaIV	GGNNCC	2 cut(s)	52, 748
NmeAIII	GCCGAG	2 cut(s)	27, 34
NsbI	TGCGCA	1 cut(s)	907
NsiI	ATGCAT	1 cut(s)	585
NspI	RCATGY	2 cut(s)	323, 683
PaeR7I	CTCGAG	1 cut(s)	61
PagI	TCATGA	2 cut(s)	313, 835
PceI	AGGCCT	1 cut(s)	555
PciI	ACATGT	1 cut(s)	679
PfeI	GAWTC	3 cut(s)	283, 296, 890
PinAI	ACCGGT	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	7, 901
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	3 cut(s)	304, 772, 826
PpsI	GAGTC	3 cut(s)	304, 772, 826
Ppu21I	YACGTR	2 cut(s)	353, 853
PscI	ACATGT	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	123
PspEI	GGTNACC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	52, 748
PspPI	GGNCC	1 cut(s)	145
PspXI	VCTCGAGB	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	712, 746
PvuI	CGATCG	1 cut(s)	32
RseI	CAYNNNNRTG	3 cut(s)	318, 324, 434
SaqAI	TTAA	3 cut(s)	456, 821, 870
SatI	GCNGC	2 cut(s)	6, 900
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	3 cut(s)	304, 772, 826
ScrFI	CCNGG	3 cut(s)	55, 125, 143
SduI	GDGCHC	1 cut(s)	62
SfaNI	GCATC	1 cut(s)	316
Sfr274I	CTCGAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	3 cut(s)	318, 324, 434
SmlI	CTYRAG	2 cut(s)	61, 869
SmoI	CTYRAG	2 cut(s)	61, 869
Sse9I	AATT	5 cut(s)	157, 440, 516, 560, 822
SseBI	AGGCCT	1 cut(s)	555
SsiI	CCGC	3 cut(s)	5, 24, 195
StuI	AGGCCT	1 cut(s)	555
StyD4I	CCNGG	3 cut(s)	53, 123, 141
TaaI	ACNGT	2 cut(s)	540, 708
TaiI	ACGT	5 cut(s)	117, 176, 245, 355, 855
TaqI	TCGA	3 cut(s)	28, 62, 228
TasI	AATT	5 cut(s)	157, 440, 516, 560, 822
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	283, 296, 890
Tru1I	TTAA	3 cut(s)	456, 821, 870
Tru9I	TTAA	3 cut(s)	456, 821, 870
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	1 cut(s)	899
TspDTI	ATGAA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	441
Vha464I	CTTAAG	1 cut(s)	869
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	2 cut(s)	323, 683
XhoI	CTCGAG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	855
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.