Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009230

Physical Location & Seq

Genomic Coordinates Reverse (-)

35229622 .. 35239587

Gene Structure 9966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1258200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCGGCCGGGAACCAAGACGGCGGTCGATCGGCGCTGATCTTTCTCGGAACCGGGTGCTCCGGCTCCGTTCCCAACGCAATGTGCCTGATCCAGGCCTCCGATCCCTGCCACGTCTGCGCTCAGGCGCTCTCCATCCCCCCGGACCAAAACCCTAATTACCGGTGCAATACGTCGCTTTTGATTGATCGTTGCGGAAGCGATGGTAACCACAGCTACATATTGATCGATGTCGGAAAGACTTTCCGGGAGCAAGTGCTTCGATGGTTCACTCGCTATAAGATTCCGAGAGTTGATTCTATTATTTTGACTCATGAACATGCTGATGCAGTTCTTGGTCTGGATGATATACGTGCCATTCAACCACATAGTCCCACAAATGACATTGATCCTACTCCCATCTACCTAAGTCATTATGCAATGGAGAGCGTTGCAGTGAAATTTCCTTACCTGATTAAGAAAAAACTTGTTGAAGGTCAAGAAGTGAGACGAGTAGCACAACTTGACTGGAGGATAATTGAGGAGAGTATTGAAACACCGTTTCTTGTGTCAGACCTACAATTTGTTCCTTTGCCAGTGATGCATGGGGAGGATTATATTTGTTTGGGTTATCTATTTGGTGAAAGATGTAGAATAGCGTATATATCTGACGTTTCACGCTTTCCTGCAAGCACGGAACATGTTATTTCGAAAGATGGAGCTGGACAGTTGGATCTTCTTATCTTGGACACACTATACAAGACTGGATCCCATAATGTTCACCTTTGCCTCCCACAGACTCTTGAAGCTGTGAAGAGGATTTGTCCCAAAAAAGCCCTTTTAATTGGAATGAATCATCAGTTTGATCACCACGTAGACAATAAGTTTCTTATGGAATGGTCTGAGAGGGAAGGCATTCAAGTGCAGCTTGCGCATGATGGTTTGAGAGTGCCCGTAGACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00440 map00440

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

315

Amino Acids

35.18

Weight (kDa)

5.84

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anti-Pycsar_Apyc1	PF23023	70 - 281	5e-06	Anti-Pycsar protein Apyc1
Lactamase_B_2	PF12706	74 - 276	2.4e-22	Beta-lactamase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30300 AT1G30300 AT1G30300 AT1G30300
fragaria_vesca	FvH4_3g05040 FvH4_3g05040 FvH4_3g05040
malus_domestica	MD05G1279500.v1.1 MD10G1258200.v1.1
prunus_persica	Prupe.4G085600_v2.0.a1
pyrus_communis	pycom10g21450
rosa_chinensis	RchiOBHm_Chr5g0014931
rosa_laevigata	RLG00000032151
rosa_multiflora	Rmu_sc0013610.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061650
rosa_rugosa	Rorug05G0021500 Rorug05G0021600
rosa_samantha	Rh5AG117200 Rh5BG114200 Rh5CG125700 Rh5DG113600
rosa_wichuraiana	Rw5G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	912
AccI	GTMKAC	2 cut(s)	855, 936
AciI	CCGC	3 cut(s)	5, 24, 195
AclWI	GGATC	6 cut(s)	85, 98, 383, 720, 741, 754
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	679
AgeI	ACCGGT	1 cut(s)	162
AgsI	TTSAA	5 cut(s)	362, 473, 533, 785, 899
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	4 cut(s)	216, 701, 788, 907
AluI	AGCT	4 cut(s)	216, 701, 788, 907
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	6 cut(s)	85, 98, 383, 720, 741, 754
AoxI	GGCC	2 cut(s)	6, 96
ApeKI	GCWGC	1 cut(s)	904
ApoI	RAATTY	1 cut(s)	440
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
AsiGI	ACCGGT	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	894
AspLEI	GCGC	4 cut(s)	37, 122, 130, 913
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	4 cut(s)	10, 55, 143, 248
AsuHPI	GGTGA	3 cut(s)	632, 752, 839
AsuII	TTCGAA	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	933
BamHI	GGATCC	1 cut(s)	746
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	916
BccI	CCATC	6 cut(s)	143, 197, 258, 407, 689, 911
BceAI	ACGGC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	844
BcnI	CCSGG	4 cut(s)	10, 55, 143, 248
BcoDI	GTCTC	1 cut(s)	481
BfoI	RGCGCY	2 cut(s)	38, 131
BisI	GCNGC	2 cut(s)	6, 905
BlsI	GCNGC	2 cut(s)	7, 906
Bme1390I	CCNGG	5 cut(s)	10, 55, 95, 143, 248
Bme18I	GGWCC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	4 cut(s)	14, 52, 67, 748
BmrFI	CCNGG	5 cut(s)	10, 55, 95, 143, 248
BmsI	GCATC	2 cut(s)	316, 570
BoxI	GACNNNNGTC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	529
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	689
BpuMI	CCSGG	4 cut(s)	10, 55, 143, 248
Bsa29I	ATCGAT	1 cut(s)	228
BsaAI	YACGTR	2 cut(s)	353, 853
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	3 cut(s)	512, 575, 748
Bse3DI	GCAATG	2 cut(s)	87, 426
BseBI	CCWGG	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	135, 349
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	2 cut(s)	87, 426
BseMII	CTCAG	2 cut(s)	137, 873
BseNI	ACTGG	3 cut(s)	512, 575, 748
BseRI	GAGGAG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	933
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	916
BsgI	GTGCAG	1 cut(s)	923
Bsh1285I	CGRYCG	3 cut(s)	9, 28, 32
BshFI	GGCC	2 cut(s)	8, 98
BshTI	ACCGGT	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	228
BsiEI	CGRYCG	3 cut(s)	9, 28, 32
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	6 cut(s)	9, 54, 63, 143, 163, 247
BslFI	GGGAC	2 cut(s)	357, 789
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	481
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	2 cut(s)	357, 789
BsmI	GAATGC	1 cut(s)	894
BsnI	GGCC	2 cut(s)	8, 98
Bsp119I	TTCGAA	1 cut(s)	689
Bsp1286I	GDGCHC	2 cut(s)	62, 933
BspACI	CCGC	3 cut(s)	5, 24, 195
BspANI	GGCC	2 cut(s)	8, 98
BspCNI	CTCAG	2 cut(s)	136, 874
BspDI	ATCGAT	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	4 cut(s)	14, 52, 67, 748
BspPI	GGATC	6 cut(s)	85, 98, 383, 720, 741, 754
BspT104I	TTCGAA	1 cut(s)	689
BsrDI	GCAATG	2 cut(s)	87, 426
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	512, 575, 748
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	540, 708
Bst6I	CTCTTC	1 cut(s)	788
BstBAI	YACGTR	2 cut(s)	353, 853
BstBI	TTCGAA	1 cut(s)	689
BstC8I	GCNNGC	2 cut(s)	670, 909
BstDEI	CTNAG	3 cut(s)	123, 407, 882
BstEII	GGTNACC	1 cut(s)	206
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	135, 349
BstH2I	RGCGCY	2 cut(s)	38, 131
BstHHI	GCGC	4 cut(s)	37, 122, 130, 913
BstMAI	GTCTC	1 cut(s)	481
BstMCI	CGRYCG	3 cut(s)	9, 28, 32
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 580, 910
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	2 cut(s)	323, 683
BstPAI	GACNNNNGTC	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	5 cut(s)	8, 53, 93, 141, 246
BstSLI	GKGCMC	1 cut(s)	933
BstV1I	GCAGC	1 cut(s)	916
BstX2I	RGATCY	2 cut(s)	712, 746
BstYI	RGATCY	2 cut(s)	712, 746
BstZI	CGGCCG	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	8, 98
BsuTUI	ATCGAT	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	216
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	135, 349
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	441, 582
Cac8I	GCNNGC	2 cut(s)	670, 909
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	4 cut(s)	37, 122, 130, 913
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	228
CspAI	ACCGGT	1 cut(s)	162
CviAII	CATG	5 cut(s)	314, 320, 584, 680, 914
CviJI	RGCY	8 cut(s)	8, 66, 98, 216, 701, 788, 815, 907
CviKI_1	RGCY	8 cut(s)	8, 66, 98, 216, 701, 788, 815, 907
DdeI	CTNAG	3 cut(s)	123, 407, 882
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
EclXI	CGGCCG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	145
Eco52I	CGGCCG	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	206
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	5 cut(s)	317, 323, 587, 683, 917
FalI	AAGNNNNNCTT	2 cut(s)	891, 923
FaqI	GGGAC	2 cut(s)	357, 789
FatI	CATG	5 cut(s)	313, 319, 583, 679, 913
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	2 cut(s)	855, 936
Fnu4HI	GCNGC	2 cut(s)	6, 905
FokI	GGATG	2 cut(s)	122, 356
Fsp4HI	GCNGC	2 cut(s)	6, 905
FspI	TGCGCA	1 cut(s)	912
GlaI	GCGC	4 cut(s)	36, 121, 129, 912
GluI	GCNGC	2 cut(s)	6, 905
GsuI	CTGGAG	1 cut(s)	529
HaeII	RGCGCY	2 cut(s)	38, 131
HaeIII	GGCC	2 cut(s)	8, 98
HapII	CCGG	6 cut(s)	9, 54, 63, 143, 163, 247
HhaI	GCGC	4 cut(s)	37, 122, 130, 913
Hin1II	CATG	5 cut(s)	317, 323, 587, 683, 917
Hin6I	GCGC	4 cut(s)	35, 120, 128, 911
HinP1I	GCGC	4 cut(s)	35, 120, 128, 911
HinfI	GANTC	5 cut(s)	283, 296, 310, 778, 832
HpaII	CCGG	6 cut(s)	9, 54, 63, 143, 163, 247
HphI	GGTGA	3 cut(s)	632, 752, 839
Hpy166II	GTNNAC	4 cut(s)	270, 760, 856, 937
Hpy188I	TCNGA	7 cut(s)	50, 103, 236, 288, 553, 649, 883
Hpy188III	TCNNGA	4 cut(s)	314, 341, 479, 782
Hpy8I	GTNNAC	4 cut(s)	270, 760, 856, 937
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	2 cut(s)	467, 884
HpyCH4III	ACNGT	2 cut(s)	540, 708
HpyCH4IV	ACGT	5 cut(s)	114, 173, 352, 651, 852
HpyCH4V	TGCA	7 cut(s)	168, 329, 419, 434, 583, 668, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 580, 910
HpyF3I	CTNAG	3 cut(s)	123, 407, 882
HpySE526I	ACGT	5 cut(s)	114, 173, 352, 651, 852
Hsp92II	CATG	5 cut(s)	317, 323, 587, 683, 917
HspAI	GCGC	4 cut(s)	35, 120, 128, 911
Ksp22I	TGATCA	1 cut(s)	844
LmnI	GCTCC	4 cut(s)	65, 71, 250, 698
Lsp1109I	GCAGC	1 cut(s)	916
LweI	GCATC	2 cut(s)	316, 570
MaeII	ACGT	5 cut(s)	114, 173, 352, 651, 852
MaeIII	GTNAC	1 cut(s)	206
MboII	GAAGA	2 cut(s)	707, 805
MflI	RGATCY	2 cut(s)	712, 746
MhlI	GDGCHC	2 cut(s)	62, 933
MluCI	AATT	5 cut(s)	157, 440, 516, 560, 822
MlyI	GAGTC	2 cut(s)	304, 772
MmeI	TCCRAC	2 cut(s)	214, 690
MnlI	CCTC	7 cut(s)	109, 504, 514, 583, 779, 789, 879
Mph1103I	ATGCAT	1 cut(s)	585
MroXI	GAANNNNTTC	1 cut(s)	894
MseI	TTAA	2 cut(s)	456, 821
MslI	CAYNNNNRTG	3 cut(s)	318, 324, 899
MspI	CCGG	6 cut(s)	9, 54, 63, 143, 163, 247
MspR9I	CCNGG	5 cut(s)	10, 55, 95, 143, 248
Mva1269I	GAATGC	1 cut(s)	894
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	117, 580, 910
NciI	CCSGG	4 cut(s)	10, 55, 143, 248
NlaIII	CATG	5 cut(s)	317, 323, 587, 683, 917
NlaIV	GGNNCC	4 cut(s)	14, 52, 67, 748
NsbI	TGCGCA	1 cut(s)	912
NsiI	ATGCAT	1 cut(s)	585
NspI	RCATGY	2 cut(s)	323, 683
NspV	TTCGAA	1 cut(s)	689
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	98
PciI	ACATGT	1 cut(s)	679
PctI	GAATGC	1 cut(s)	894
PdmI	GAANNNNTTC	1 cut(s)	894
PfeI	GAWTC	3 cut(s)	283, 296, 832
PfoI	TCCNGGA	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	7, 906
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	2 cut(s)	304, 772
PpsI	GAGTC	2 cut(s)	304, 772
Ppu21I	YACGTR	2 cut(s)	353, 853
PscI	ACATGT	1 cut(s)	679
PshAI	GACNNNNGTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	93
PspEI	GGTNACC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	4 cut(s)	14, 52, 67, 748
PspPI	GGNCC	1 cut(s)	145
PsuI	RGATCY	2 cut(s)	712, 746
PvuI	CGATCG	1 cut(s)	32
RseI	CAYNNNNRTG	3 cut(s)	318, 324, 899
SaqAI	TTAA	2 cut(s)	456, 821
SatI	GCNGC	2 cut(s)	6, 905
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	304, 772
ScrFI	CCNGG	5 cut(s)	10, 55, 95, 143, 248
SduI	GDGCHC	2 cut(s)	62, 933
SfaNI	GCATC	2 cut(s)	316, 570
SfuI	TTCGAA	1 cut(s)	689
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	3 cut(s)	318, 324, 899
Sse9I	AATT	5 cut(s)	157, 440, 516, 560, 822
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	3 cut(s)	5, 24, 195
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	5 cut(s)	8, 53, 93, 141, 246
TaaI	ACNGT	2 cut(s)	540, 708
TaiI	ACGT	5 cut(s)	117, 176, 355, 654, 855
TaqI	TCGA	4 cut(s)	28, 228, 262, 689
TasI	AATT	5 cut(s)	157, 440, 516, 560, 822
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	283, 296, 832
Tru1I	TTAA	2 cut(s)	456, 821
Tru9I	TTAA	2 cut(s)	456, 821
TscAI	CASTG	2 cut(s)	441, 582
TseI	GCWGC	1 cut(s)	904
TspDTI	ATGAA	2 cut(s)	330, 845
TspGWI	ACGGA	2 cut(s)	58, 689
TspRI	CASTG	2 cut(s)	441, 582
VpaK11BI	GGWCC	1 cut(s)	145
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	2 cut(s)	323, 683
XmiI	GTMKAC	2 cut(s)	855, 936
XmnI	GAANNNNTTC	1 cut(s)	894
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.