Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009230

Physical Location & Seq

Genomic Coordinates Reverse (-)

24071585 .. 24075134

Gene Structure 3550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g21450.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCGGCCGGGAACCAAGACGGCGGTCGATCGGCGCTGATCTTTCTCGGAACCGGGTGCTCCAGCGCCGTTCCCAACGCAATGTGCCTGATCCAGGCCTCCGATCCCTGCCAAGTCTGCGCTCAGGCGCTCTCCATCCCCCCGGACCAAAACCCTAATTACCGGTGCAATACGTCGCTTTTGATTGATCGTTGCGGAAGCGATGGTAACCACAGCTACATATTGATCGATGTCGGAAAGACGTTCCGGGAGCAAGTGCTTCGATGGTTCACTCGCTATAAGATTCCGAGAGTTGATTCTATTATTTTGACTCATGAACATGCTGATGCAGTTCTTGGTCTGGATGATATACGTGCCATTCAACCACATAGTCCCACAAATGACATTGATCCTACTCCCATCTACCTAAGTCATTATGCAATGGAGAGCATTGCAGTGAAATTTCCTTACCTGGTTAAGAAAAAACTTGTTGAAGGACAAGAAGTGAGACGAGTATCACAACTTGACTGGAGGATAATTGAGGAGAGTATTGAAACACCGTTTCTTGCGTCAGGCCTACAATTTGTTCCTTTGCCGGTGATGCATGGGGAGGATTATATTTGTTTGGGTTATCTATTTGGTGAAAGATGTAGAATAGCGTATATATCTGACGTTTCACGCTTTCCTGCAAGCACAGAATATGTTATTTCAAAAGATGGAGCTGGACAGTTGGATCTTCTTATCTTGGACACACTATTCAAGACTGGATCCCATAATGTTCACCTTTGCCTCCCACAGACTCTTGAAGCCGTGAAGAGGATTTGTCCAAAAAAAGCCCTGTTAATCGGAATGACTCATCAGTTTGATCACCATGTAGACAATAAGTTTCTTATGGAATGGTCTGAGAGGGAAGGGATTCAAGTGCAGCTTGCGCATGATGGTTTGAGAGTGCCTGTAGACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00440 map00440

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

315

Amino Acids

35.11

Weight (kDa)

5.82

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30300 AT1G30300 AT1G30300 AT1G30300
fragaria_vesca	FvH4_3g05040 FvH4_3g05040 FvH4_3g05040
malus_domestica	MD05G1279500.v1.1 MD10G1258200.v1.1
prunus_persica	Prupe.4G085600_v2.0.a1
pyrus_communis	pycom10g21450
rosa_chinensis	RchiOBHm_Chr5g0014931
rosa_laevigata	RLG00000032151
rosa_multiflora	Rmu_sc0013610.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061650
rosa_rugosa	Rorug05G0021500 Rorug05G0021600
rosa_samantha	Rh5AG117200 Rh5BG114200 Rh5CG125700 Rh5DG113600
rosa_wichuraiana	Rw5G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	912
AccI	GTMKAC	2 cut(s)	855, 936
AciI	CCGC	3 cut(s)	5, 24, 195
AclWI	GGATC	6 cut(s)	85, 98, 383, 720, 741, 754
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	94, 795
AgeI	ACCGGT	1 cut(s)	162
AgsI	TTSAA	7 cut(s)	362, 473, 533, 690, 739, 785, 899
AjnI	CCWGG	2 cut(s)	93, 450
AluBI	AGCT	3 cut(s)	216, 701, 907
AluI	AGCT	3 cut(s)	216, 701, 907
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	6 cut(s)	85, 98, 383, 720, 741, 754
AoxI	GGCC	3 cut(s)	6, 96, 553
ApeKI	GCWGC	1 cut(s)	904
ApoI	RAATTY	1 cut(s)	440
AsiGI	ACCGGT	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	894
AspLEI	GCGC	5 cut(s)	37, 68, 122, 130, 913
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	4 cut(s)	10, 55, 143, 248
AsuHPI	GGTGA	4 cut(s)	589, 632, 752, 839
AvaII	GGWCC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	746
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	916
BccI	CCATC	6 cut(s)	143, 197, 258, 407, 689, 911
BceAI	ACGGC	3 cut(s)	37, 53, 773
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	2 cut(s)	95, 452
BclI	TGATCA	1 cut(s)	844
BcnI	CCSGG	4 cut(s)	10, 55, 143, 248
BcoDI	GTCTC	1 cut(s)	481
BfmI	CTRYAG	1 cut(s)	933
BfoI	RGCGCY	3 cut(s)	38, 69, 131
BisI	GCNGC	2 cut(s)	6, 905
BlsI	GCNGC	2 cut(s)	7, 906
Bme1390I	CCNGG	6 cut(s)	10, 55, 95, 143, 248, 452
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	3 cut(s)	14, 52, 748
BmrFI	CCNGG	6 cut(s)	10, 55, 95, 143, 248, 452
BmsI	GCATC	2 cut(s)	316, 570
BoxI	GACNNNNGTC	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	46, 529
Bpu10I	CCTNAGC	1 cut(s)	123
BpuMI	CCSGG	4 cut(s)	10, 55, 143, 248
Bsa29I	ATCGAT	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 795
Bse118I	RCCGGY	2 cut(s)	162, 574
Bse1I	ACTGG	2 cut(s)	512, 748
Bse3DI	GCAATG	3 cut(s)	87, 426, 429
BseBI	CCWGG	2 cut(s)	95, 452
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	135, 349
BseLI	CCNNNNNNNGG	2 cut(s)	94, 795
BseMI	GCAATG	3 cut(s)	87, 426, 429
BseMII	CTCAG	2 cut(s)	137, 873
BseNI	ACTGG	2 cut(s)	512, 748
BseRI	GAGGAG	1 cut(s)	536
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	916
BsgI	GTGCAG	1 cut(s)	923
Bsh1285I	CGRYCG	3 cut(s)	9, 28, 32
BshFI	GGCC	3 cut(s)	8, 98, 555
BshTI	ACCGGT	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	228
BsiEI	CGRYCG	3 cut(s)	9, 28, 32
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	6 cut(s)	9, 54, 143, 163, 247, 575
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	94, 795
BsmAI	GTCTC	1 cut(s)	481
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	8, 98, 555
Bsp1286I	GDGCHC	1 cut(s)	62
BspACI	CCGC	3 cut(s)	5, 24, 195
BspANI	GGCC	3 cut(s)	8, 98, 555
BspCNI	CTCAG	2 cut(s)	136, 874
BspDI	ATCGAT	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	3 cut(s)	14, 52, 748
BspPI	GGATC	6 cut(s)	85, 98, 383, 720, 741, 754
BsrDI	GCAATG	3 cut(s)	87, 426, 429
BsrFI	RCCGGY	2 cut(s)	162, 574
BsrI	ACTGG	2 cut(s)	512, 748
BssAI	RCCGGY	2 cut(s)	162, 574
BssECI	CCNNGG	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	95, 452
Bst4CI	ACNGT	2 cut(s)	540, 708
Bst6I	CTCTTC	1 cut(s)	788
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	670, 909
BstDEI	CTNAG	3 cut(s)	123, 407, 882
BstEII	GGTNACC	1 cut(s)	206
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	135, 349
BstH2I	RGCGCY	3 cut(s)	38, 69, 131
BstHHI	GCGC	5 cut(s)	37, 68, 122, 130, 913
BstMAI	GTCTC	1 cut(s)	481
BstMCI	CGRYCG	3 cut(s)	9, 28, 32
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 580, 910
BstNI	CCWGG	2 cut(s)	95, 452
BstNSI	RCATGY	1 cut(s)	323
BstPAI	GACNNNNGTC	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	6 cut(s)	8, 53, 93, 141, 246, 450
BstSFI	CTRYAG	1 cut(s)	933
BstV1I	GCAGC	1 cut(s)	916
BstX2I	RGATCY	2 cut(s)	712, 746
BstYI	RGATCY	2 cut(s)	712, 746
BstZI	CGGCCG	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	8, 98, 555
BsuTUI	ATCGAT	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	135, 349
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	670, 909
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	5 cut(s)	37, 68, 122, 130, 913
Cfr10I	RCCGGY	2 cut(s)	162, 574
Cfr13I	GGNCC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	228
CseI	GACGC	1 cut(s)	537
CsiI	ACCWGGT	1 cut(s)	450
CspAI	ACCGGT	1 cut(s)	162
CviAII	CATG	5 cut(s)	314, 320, 584, 851, 914
CviJI	RGCY	8 cut(s)	8, 98, 216, 555, 701, 788, 815, 907
CviKI_1	RGCY	8 cut(s)	8, 98, 216, 555, 701, 788, 815, 907
DdeI	CTNAG	3 cut(s)	123, 407, 882
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
EclXI	CGGCCG	1 cut(s)	6
Eco147I	AGGCCT	2 cut(s)	98, 555
Eco47I	GGWCC	1 cut(s)	145
Eco52I	CGGCCG	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	206
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	93, 450
EcoT22I	ATGCAT	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	5 cut(s)	317, 323, 587, 854, 917
FalI	AAGNNNNNCTT	2 cut(s)	891, 923
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	5 cut(s)	313, 319, 583, 850, 913
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	2 cut(s)	855, 936
Fnu4HI	GCNGC	2 cut(s)	6, 905
FokI	GGATG	2 cut(s)	122, 356
Fsp4HI	GCNGC	2 cut(s)	6, 905
FspI	TGCGCA	1 cut(s)	912
GlaI	GCGC	5 cut(s)	36, 67, 121, 129, 912
GluI	GCNGC	2 cut(s)	6, 905
GsuI	CTGGAG	2 cut(s)	46, 529
HaeII	RGCGCY	3 cut(s)	38, 69, 131
HaeIII	GGCC	3 cut(s)	8, 98, 555
HapII	CCGG	6 cut(s)	9, 54, 143, 163, 247, 575
HgaI	GACGC	1 cut(s)	537
HhaI	GCGC	5 cut(s)	37, 68, 122, 130, 913
Hin1II	CATG	5 cut(s)	317, 323, 587, 854, 917
Hin6I	GCGC	5 cut(s)	35, 66, 120, 128, 911
HinP1I	GCGC	5 cut(s)	35, 66, 120, 128, 911
HinfI	GANTC	6 cut(s)	283, 296, 310, 778, 832, 895
HpaII	CCGG	6 cut(s)	9, 54, 143, 163, 247, 575
HphI	GGTGA	4 cut(s)	589, 632, 752, 839
Hpy166II	GTNNAC	4 cut(s)	270, 760, 856, 937
Hpy188I	TCNGA	7 cut(s)	50, 103, 236, 288, 649, 827, 883
Hpy188III	TCNNGA	4 cut(s)	314, 341, 739, 782
Hpy8I	GTNNAC	4 cut(s)	270, 760, 856, 937
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	2 cut(s)	467, 884
HpyCH4III	ACNGT	2 cut(s)	540, 708
HpyCH4IV	ACGT	4 cut(s)	173, 242, 352, 651
HpyCH4V	TGCA	7 cut(s)	168, 329, 419, 434, 583, 668, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 580, 910
HpyF3I	CTNAG	3 cut(s)	123, 407, 882
HpySE526I	ACGT	4 cut(s)	173, 242, 352, 651
Hsp92II	CATG	5 cut(s)	317, 323, 587, 854, 917
HspAI	GCGC	5 cut(s)	35, 66, 120, 128, 911
Ksp22I	TGATCA	1 cut(s)	844
LmnI	GCTCC	3 cut(s)	65, 250, 698
Lsp1109I	GCAGC	1 cut(s)	916
LweI	GCATC	2 cut(s)	316, 570
MabI	ACCWGGT	1 cut(s)	450
MaeII	ACGT	4 cut(s)	173, 242, 352, 651
MaeIII	GTNAC	1 cut(s)	206
MboII	GAAGA	2 cut(s)	707, 805
MflI	RGATCY	2 cut(s)	712, 746
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	4 cut(s)	157, 440, 516, 560
MlyI	GAGTC	3 cut(s)	304, 772, 826
MmeI	TCCRAC	2 cut(s)	214, 690
MnlI	CCTC	7 cut(s)	109, 504, 514, 583, 779, 789, 879
Mph1103I	ATGCAT	1 cut(s)	585
MroXI	GAANNNNTTC	1 cut(s)	894
MseI	TTAA	2 cut(s)	456, 821
MslI	CAYNNNNRTG	3 cut(s)	318, 324, 434
MspI	CCGG	6 cut(s)	9, 54, 143, 163, 247, 575
MspR9I	CCNGG	6 cut(s)	10, 55, 95, 143, 248, 452
MvaI	CCWGG	2 cut(s)	95, 452
MwoI	GCNNNNNNNGC	3 cut(s)	117, 580, 910
NciI	CCSGG	4 cut(s)	10, 55, 143, 248
NlaIII	CATG	5 cut(s)	317, 323, 587, 854, 917
NlaIV	GGNNCC	3 cut(s)	14, 52, 748
NsbI	TGCGCA	1 cut(s)	912
NsiI	ATGCAT	1 cut(s)	585
NspI	RCATGY	1 cut(s)	323
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	2 cut(s)	98, 555
PdmI	GAANNNNTTC	1 cut(s)	894
PfeI	GAWTC	3 cut(s)	283, 296, 895
PfoI	TCCNGGA	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	7, 906
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	3 cut(s)	304, 772, 826
PpsI	GAGTC	3 cut(s)	304, 772, 826
Ppu21I	YACGTR	1 cut(s)	353
PshAI	GACNNNNGTC	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	93, 450
PspEI	GGTNACC	1 cut(s)	206
PspGI	CCWGG	2 cut(s)	93, 450
PspN4I	GGNNCC	3 cut(s)	14, 52, 748
PspPI	GGNCC	1 cut(s)	145
PsuI	RGATCY	2 cut(s)	712, 746
PvuI	CGATCG	1 cut(s)	32
RseI	CAYNNNNRTG	3 cut(s)	318, 324, 434
SaqAI	TTAA	2 cut(s)	456, 821
SatI	GCNGC	2 cut(s)	6, 905
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	3 cut(s)	304, 772, 826
ScrFI	CCNGG	6 cut(s)	10, 55, 95, 143, 248, 452
SduI	GDGCHC	1 cut(s)	62
SexAI	ACCWGGT	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	316, 570
SfcI	CTRYAG	1 cut(s)	933
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	3 cut(s)	318, 324, 434
Sse9I	AATT	4 cut(s)	157, 440, 516, 560
SseBI	AGGCCT	2 cut(s)	98, 555
SsiI	CCGC	3 cut(s)	5, 24, 195
StuI	AGGCCT	2 cut(s)	98, 555
StyD4I	CCNGG	6 cut(s)	8, 53, 93, 141, 246, 450
TaaI	ACNGT	2 cut(s)	540, 708
TaiI	ACGT	4 cut(s)	176, 245, 355, 654
TaqI	TCGA	3 cut(s)	28, 228, 262
TasI	AATT	4 cut(s)	157, 440, 516, 560
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	283, 296, 895
Tru1I	TTAA	2 cut(s)	456, 821
Tru9I	TTAA	2 cut(s)	456, 821
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	1 cut(s)	904
TspDTI	ATGAA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	145
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	323
XmiI	GTMKAC	2 cut(s)	855, 936
XmnI	GAANNNNTTC	1 cut(s)	894
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.