Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002807

Physical Location & Seq

Genomic Coordinates Reverse (-)

2951068 .. 2957835

Gene Structure 6768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05100.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGAGAGAAGAGGTCATCAGCTCCGGAGGGACCGTTGATCCTACTCCTGCCGCCAGTTCGGCGGGGGCGTCTTCGCCGACTGTGCATGGAAATGTGGGCAGTGTGGACGGGTCTGTTCATGGACAGGGCTCCAAAGGAGCGTCTATTTCGTGTGTTGGCTCGCAGCCTCCCATGACTTCTTTGAGCACCAGTGCGGGTGCTGGTGGCGGAAGGGGTAGTTCTGTTTTTGGGTCTTCGAAACTGTCGTGTAGGCCTTGGGAGAGAGGGGACTTGCTGCGCCGGTTGGCTACTTTTAGGCCCTCCCATTGGTCTGGAAAGCCCAAGGTCATCAGTTCACTGGCTTGTGCTAGGAGAGGTTGGGCAAATGTTGATGTAGATAAAGTTTCATGTGAATCATGCGGGGCCTACCTTACTTTTTCTTTGTTGCCGACGTGGAGTCCTGATGAAGTTCAAAGCGCTGGGGAAGCCTTTTTCAAACAGCTAGATTCCGGTCACAAAGTTGCTTGTCCTTGGAGAGGAAACAGCTGCCCTGAAAGCTTGGTGCAATTCCCTCCTACTCCTCAGTCTGCCTTAATTGGTGGATATAAGGATAGATGTGATGGACTTTTGCAATTTCACTCGCTCCCTAAGGTAGCTGCCTCTGTAATTGAGCAAATATGGGTTTCTCGGGGTCCACAGATCGACCGGCTTCTGTCCCAGTCCCAGAATTTCATGGCAGGAGATGTAGATTTTAAACCGGAAAGTATACCAGAAGTGGAGAGCTCTCGAGATGGAGCAATCTGTTTATATTCGCGTGCACAGAGGCTTATAAGTCTTTGTGGATGGGAACCAAGATGGCTTTTGAATATTCAAGACTATGAAGAACATTCTGCCCAATCAGCTAGAAATGGATATTCTCTTGGGCCTACCTATGCCCAGGTCCATCTTTCACATGATCCTGGAGCAAGCAAGAAAGCTATTTCAGCTTCTGCTAGAAAAGATACCGGAAAGAGTAAAGTTTTAGTTAAGGAATCCAGAGGTGATCTCAGGTCACCTTTGCTGGATTGCAGCTTATGTGGTGCCACAGTCAGAATATTGGATTTCTTAACCATTCCTCGACCTGCGCGTTTTGCTTCGAACAGTATTGATATTCCTGACACGAGCAAAAAGATGGGTTTGACACGTGGTGCAAGTGCAGCCAGTGGAATTAGTGGTTGGGTTGCTGCTGACGATGCAAAAGAACATACTGAAGACCGTGATGAAGTAGCAACGACAACTGAGGGGAATTTGATTCCAAACGCAGATGTTGATTTGAATCTTACAATGTCAGGGGGTTTAACATTTAATCGGTTCGGCAGAGCAGGAATGGCTGATAATATTAATGATGCAGATATGGGCAGGGATCTAATAATTGGGCAACCACAAGGCAGTGAGGTTGGGGATCGTGCAGCTTCATATGAATCAAGGGGTCCTAGCTCCCGTAAACGGAGTTTGGAAAAAGTAGGCAGCTCTGTTGATAGGCCACATTTAAGGACGCAGCAGGCTGATAGTGTTGAAGGAACTGTTATTGATCGTGATGGTGATGAAGTTACAGATTGTAGACAAGATTCAGCTGGACCATCAAAACGAGCCCGTGATTCAGATTTTGTTGATACATACTGTTCATCTGGTGCCGGTCCCAGTCATTCAATGGGTCTTGAAAATTTTACTGAGGGTAGTAATAGAGGTGCTTCATTTCCACAAGGAAGTGACCAGTTTGCTGGAATCCATTCAACTAGGGATTCAGCACGTGCATCTTCAGTTATTGCAATGGATACAATTGGTCATACTTCAGATGATGACTCTATGGCAAGTGTTGAAAATCATCCGGGAGATATGGATGATATTCATTTCCCCTCATCTAGTACGTATGGAAATCTGGACATGAATGAGACATCAGAAGTGAATTATAGTAATCAAGCTCAACAGAGCATTGGTTTTCAACCAGTTGCTGATGTAGTTCCTGAGGAAATGGGTGTTAGTAGTACAAATGATGGGGAAGAGATCTTCAATGCTGAAACTATGACTGCTCAGGCTCGGGATGGGTTTAGTTTTGGGATGAGTGGAGGGAGTGTTGGAATGTGTGCTAGTCATGAAGCTGAGATTCATGGCGCTGATGTATCTGTCCATAAAGCAGATAGTGTCGTTGGTGATGTGGAACCCAGAACAGAAGATGCTGAGAATCAGGGCCAGACAGGCGAATCTGCACCTGATCCGGGACTAATGGATGAAATCGTTCCTGATGAGATAAATAGGGAAGATCCTCAAGGTGATAGCCAGGAGATGCTATCTCGATCTGTAGGGAGGGCTGATAGTGGTTCAAAGATCGATGGTTCTACAAAGGCTGAATCTGTGGAGAGTGGTGAAAAAATAAGTCAAAAGTTAGAGAACAGCGCCCGACCTTCTCTTTCATGCAATGCTAATGTATACTCTAATTATGGGACAACCAAGAAAGTGGTAAAAAATGCTGGCAAGTCTTCATTTACAAACAATTATGTGTACCAAGAATCAGAGTATGCAGTTGCCAATGGAATAGGACCTCCAAAAGGTGAGAGCAATTATGAAGAACCTATGGAGTTTGATCCAATTGGCCATCACAACCAGTTCTGCCCCTGGGTCAATGGGAATGTTGCTGCTGCTGGCAGTAGTAGCTTTGGCTCCGACACCAGTGCGGATGTTGTTGCTCTTTGTGGATGGCAGCTGACCTTAGATGCCCTTGATGCTTTGCGTTCCCTGGGGCATGTTGGAATTCAGACATTAGAGTCTGAGTCAGCAGCATCGCAATACAAGGATGATCACCGGAATCCTGGCAAGAAACTCCTTCGACACCATTCTATGAGTCGAAGCCATGGGCAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0010941 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:1901099 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001239 GO:2001240

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC

Protein Analysis

960

Amino Acids

101.92

Weight (kDa)

5.03

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC	PF07967	85 - 209	1.9e-36	NuBaID N-terminal domain (aka zf-C3HC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17210
fragaria_vesca	FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100
malus_domestica	MD03G1137700.v1.1 MD10G1258600.v1.1
prunus_persica	Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1
pyrus_communis	pycom05g26060 pycom10g21510
rosa_chinensis	RchiOBHm_Chr5g0014771
rosa_laevigata	RLG00000032139
rosa_multiflora	Rmu_co8256719.1_g000001 Rmu_co8305615.1_g000001 Rmu_sc0001908.1_g000001 Rmu_sc0028154.1_g000002 Rmu_sc0031515.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061770
rosa_rugosa	Rorug05G0020600 Rorug05G0020700
rosa_samantha	Rh5AG116200 Rh5AG116400 Rh5BG113000 Rh5CG124700 Rh5DG112400 Rh5DG112700
rosa_wichuraiana	Rw5G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	809
AasI	GACNNNNNNGTC	1 cut(s)	2779
Acc36I	ACCTGC	1 cut(s)	1108
AccB1I	GGYRCC	2 cut(s)	1058, 1649
AccI	GTMKAC	3 cut(s)	745, 1579, 2445
AccII	CGCG	2 cut(s)	793, 1105
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	6 cut(s)	51, 62, 194, 207, 399, 2690
AclWI	GGATC	7 cut(s)	32, 929, 1389, 1428, 2225, 2273, 2594
AcoI	YGGCCR	1 cut(s)	2608
AcsI	RAATTY	4 cut(s)	706, 1264, 1681, 2766
AcuI	CTGAAG	3 cut(s)	1248, 1761, 1794
AcvI	CACGTG	2 cut(s)	1163, 1769
AcyI	GRCGYC	1 cut(s)	68
AdeI	CACNNNGTG	1 cut(s)	1166
AfaI	GTAC	3 cut(s)	1885, 2005, 2519
AfeI	AGCGCT	1 cut(s)	457
AfiI	CCNNNNNNNGG	5 cut(s)	306, 515, 1464, 2234, 2564
AflIII	ACRYGT	1 cut(s)	1160
AhdI	GACNNNNNGTC	1 cut(s)	435
AjiI	CACGTC	1 cut(s)	432
AjnI	CCWGG	6 cut(s)	915, 937, 2295, 2630, 2751, 2824
AjuI	GAANNNNNNNTTGG	2 cut(s)	1177, 1209
Alw21I	GWGCWC	3 cut(s)	188, 764, 799
Alw26I	GTCTC	1 cut(s)	1904
Alw44I	GTGCAC	1 cut(s)	795
AlwI	GGATC	7 cut(s)	32, 929, 1389, 1428, 2225, 2273, 2594
AlwNI	CAGNNNCTG	2 cut(s)	968, 1970
Ama87I	CYCGRG	3 cut(s)	666, 765, 2055
Aor13HI	TCCGGA	1 cut(s)	23
Aor51HI	AGCGCT	1 cut(s)	457
AoxI	GGCC	7 cut(s)	251, 296, 402, 902, 1499, 2206, 2608
ApaLI	GTGCAC	1 cut(s)	795
ApoI	RAATTY	4 cut(s)	706, 1264, 1681, 2766
AseI	ATTAAT	1 cut(s)	1359
Asp700I	GAANNNNTTC	2 cut(s)	1747, 2253
AspLEI	GCGC	5 cut(s)	279, 458, 1105, 2132, 2414
AsuC2I	CCSGG	2 cut(s)	1848, 2235
AsuHPI	GGTGA	8 cut(s)	1023, 1031, 1571, 2180, 2300, 2393, 2579, 2807
AsuII	TTCGAA	2 cut(s)	236, 1115
AvaI	CYCGRG	3 cut(s)	666, 765, 2055
AvaII	GGWCC	7 cut(s)	30, 671, 919, 1448, 1595, 1655, 2555
AxyI	CCTNAGG	2 cut(s)	627, 1983
BaeGI	GKGCMC	1 cut(s)	799
BalI	TGGCCA	1 cut(s)	2610
BanI	GGYRCC	2 cut(s)	1058, 1649
BanII	GRGCYC	3 cut(s)	131, 764, 1612
BauI	CACGAG	1 cut(s)	1138
BbrPI	CACGTG	2 cut(s)	1163, 1769
BbsI	GAAGAC	4 cut(s)	63, 225, 1236, 2487
Bbv12I	GWGCWC	3 cut(s)	188, 764, 799
BcgI	CGANNNNNNTGC	2 cut(s)	2669, 2703
BciT130I	CCWGG	6 cut(s)	917, 939, 2297, 2632, 2753, 2826
BciVI	GTATCC	1 cut(s)	1786
BclI	TGATCA	1 cut(s)	2812
BcnI	CCSGG	2 cut(s)	1848, 2235
BcoDI	GTCTC	1 cut(s)	1904
BfaI	CTAG	8 cut(s)	348, 482, 882, 972, 1452, 1755, 1881, 2106
BfmI	CTRYAG	1 cut(s)	2316
BfoI	RGCGCY	3 cut(s)	459, 2133, 2415
BfuAI	ACCTGC	1 cut(s)	1108
BfuI	GTATCC	1 cut(s)	1786
BglI	GCCNNNNNGGC	2 cut(s)	59, 2214
BglII	AGATCT	1 cut(s)	2022
Bme1390I	CCNGG	8 cut(s)	917, 939, 1848, 2235, 2297, 2632, 2753, 2826
Bme18I	GGWCC	7 cut(s)	30, 671, 919, 1448, 1595, 1655, 2555
BmeRI	GACNNNNNGTC	1 cut(s)	435
BmeT110I	CYCGRG	3 cut(s)	666, 765, 2055
BmgBI	CACGTC	1 cut(s)	432
BmrFI	CCNGG	8 cut(s)	917, 939, 1848, 2235, 2297, 2632, 2753, 2826
BmrI	ACTGGG	2 cut(s)	691, 1653
BmsI	GCATC	8 cut(s)	1201, 1354, 1781, 2182, 2292, 2719, 2728, 2804
BmuI	ACTGGG	2 cut(s)	691, 1653
BpiI	GAAGAC	4 cut(s)	63, 225, 1236, 2487
BplI	GAGNNNNNCTC	2 cut(s)	1008, 1040
BpmI	CTGGAG	1 cut(s)	960
Bpu10I	CCTNAGC	1 cut(s)	2049
Bpu14I	TTCGAA	2 cut(s)	236, 1115
BpuEI	CTTGAG	1 cut(s)	2268
BpuMI	CCSGG	2 cut(s)	1848, 2235
Bsa29I	ATCGAT	1 cut(s)	2346
BsaAI	YACGTR	3 cut(s)	1163, 1769, 1887
BsaBI	GATNNNNATC	1 cut(s)	1293
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	9 cut(s)	254, 321, 509, 915, 2630, 2631, 2751, 2752, 2866
BsaWI	WCCGGW	5 cut(s)	23, 488, 736, 983, 2817
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 2076, 2106
Bsc4I	CCNNNNNNNGG	5 cut(s)	306, 515, 1464, 2234, 2564
Bse118I	RCCGGY	3 cut(s)	279, 684, 1652
Bse21I	CCTNAGG	2 cut(s)	627, 1983
Bse3DI	GCAATG	2 cut(s)	1794, 2440
Bse8I	GATNNNNATC	1 cut(s)	1293
BseAI	TCCGGA	1 cut(s)	23
BseBI	CCWGG	6 cut(s)	917, 939, 2297, 2632, 2753, 2826
BseCI	ATCGAT	1 cut(s)	2346
BseDI	CCNNGG	9 cut(s)	254, 321, 509, 915, 2630, 2631, 2751, 2752, 2866
BseGI	GGATG	9 cut(s)	827, 1843, 1864, 2065, 2082, 2251, 2698, 2717, 2815
BseJI	GATNNNNATC	1 cut(s)	1293
BseLI	CCNNNNNNNGG	5 cut(s)	306, 515, 1464, 2234, 2564
BseMI	GCAATG	2 cut(s)	1794, 2440
BseMII	CTCAG	9 cut(s)	575, 1039, 1248, 1680, 1974, 2063, 2109, 2187, 2775
BseRI	GAGGAG	1 cut(s)	549
BseSI	GKGCMC	1 cut(s)	799
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	3 cut(s)	1194, 1446, 2208
Bsh1236I	CGCG	2 cut(s)	793, 1105
Bsh1285I	CGRYCG	1 cut(s)	685
BshFI	GGCC	7 cut(s)	253, 298, 404, 904, 1501, 2208, 2610
BshNI	GGYRCC	2 cut(s)	1058, 1649
BshVI	ATCGAT	1 cut(s)	2346
BsiEI	CGRYCG	1 cut(s)	685
BsiHKAI	GWGCWC	3 cut(s)	188, 764, 799
BsiHKCI	CYCGRG	3 cut(s)	666, 765, 2055
BslFI	GGGAC	7 cut(s)	43, 281, 679, 685, 1641, 2250, 2473
BslI	CCNNNNNNNGG	5 cut(s)	306, 515, 1464, 2234, 2564
BsmAI	GTCTC	1 cut(s)	1904
BsmFI	GGGAC	7 cut(s)	43, 281, 679, 685, 1641, 2250, 2473
BsnI	GGCC	7 cut(s)	253, 298, 404, 904, 1501, 2208, 2610
BsoBI	CYCGRG	3 cut(s)	666, 765, 2055
Bsp119I	TTCGAA	2 cut(s)	236, 1115
Bsp1286I	GDGCHC	5 cut(s)	131, 188, 764, 799, 1612
Bsp13I	TCCGGA	1 cut(s)	23
Bsp19I	CCATGG	1 cut(s)	2866
BspACI	CCGC	6 cut(s)	51, 62, 194, 207, 399, 2690
BspANI	GGCC	7 cut(s)	253, 298, 404, 904, 1501, 2208, 2610
BspCNI	CTCAG	9 cut(s)	574, 1038, 1249, 1681, 1975, 2062, 2110, 2188, 2776
BspDI	ATCGAT	1 cut(s)	2346
BspEI	TCCGGA	1 cut(s)	23
BspFNI	CGCG	2 cut(s)	793, 1105
BspHI	TCATGA	1 cut(s)	2110
BspMI	ACCTGC	1 cut(s)	1108
BspPI	GGATC	7 cut(s)	32, 929, 1389, 1428, 2225, 2273, 2594
BspT104I	TTCGAA	2 cut(s)	236, 1115
BspT107I	GGYRCC	2 cut(s)	1058, 1649
BsrDI	GCAATG	2 cut(s)	1794, 2440
BsrFI	RCCGGY	3 cut(s)	279, 684, 1652
BssAI	RCCGGY	3 cut(s)	279, 684, 1652
BssECI	CCNNGG	9 cut(s)	254, 321, 509, 915, 2630, 2631, 2751, 2752, 2866
BssNAI	GTATAC	2 cut(s)	746, 2446
BssNI	GRCGYC	1 cut(s)	68
BssSI	CACGAG	1 cut(s)	1138
BssT1I	CCWWGG	4 cut(s)	254, 321, 509, 2866
Bst1107I	GTATAC	2 cut(s)	746, 2446
Bst2BI	CACGAG	1 cut(s)	1138
Bst2UI	CCWGG	6 cut(s)	917, 939, 2297, 2632, 2753, 2826
Bst4CI	ACNGT	8 cut(s)	34, 82, 243, 1066, 1121, 1235, 1543, 1640
Bst6I	CTCTTC	2 cut(s)	3, 2013
BstACI	GRCGYC	1 cut(s)	68
BstBAI	YACGTR	3 cut(s)	1163, 1769, 1887
BstBI	TTCGAA	2 cut(s)	236, 1115
BstC8I	GCNNGC	6 cut(s)	161, 795, 946, 1521, 2488, 2659
BstDSI	CCRYGG	1 cut(s)	2866
BstEII	GGTNACC	1 cut(s)	1029
BstENI	CCTNNNNNAGG	2 cut(s)	513, 2562
BstF5I	GGATG	9 cut(s)	827, 1843, 1864, 2065, 2082, 2251, 2698, 2717, 2815
BstFNI	CGCG	2 cut(s)	793, 1105
BstH2I	RGCGCY	3 cut(s)	459, 2133, 2415
BstHHI	GCGC	5 cut(s)	279, 458, 1105, 2132, 2414
BstMAI	GTCTC	1 cut(s)	1904
BstMCI	CGRYCG	1 cut(s)	685
BstNI	CCWGG	6 cut(s)	917, 939, 2297, 2632, 2753, 2826
BstNSI	RCATGY	1 cut(s)	2762
BstPI	GGTNACC	1 cut(s)	1029
BstSCI	CCNGG	8 cut(s)	915, 937, 1846, 2233, 2295, 2630, 2751, 2824
BstSFI	CTRYAG	1 cut(s)	2316
BstSLI	GKGCMC	1 cut(s)	799
BstSNI	TACGTA	1 cut(s)	1887
BstUI	CGCG	2 cut(s)	793, 1105
BstV2I	GAAGAC	4 cut(s)	63, 225, 1236, 2487
BstX2I	RGATCY	3 cut(s)	1381, 2022, 2278
BstXI	CCANNNNNNTGG	3 cut(s)	311, 1739, 2473
BstYI	RGATCY	3 cut(s)	1381, 2022, 2278
BstZ17I	GTATAC	2 cut(s)	746, 2446
Bsu15I	ATCGAT	1 cut(s)	2346
Bsu36I	CCTNAGG	2 cut(s)	627, 1983
BsuI	GTATCC	1 cut(s)	1786
BsuRI	GGCC	7 cut(s)	253, 298, 404, 904, 1501, 2208, 2610
BsuTUI	ATCGAT	1 cut(s)	2346
BtgI	CCRYGG	1 cut(s)	2866
BtgZI	GCGATG	1 cut(s)	2781
BtrI	CACGTC	1 cut(s)	432
BtsCI	GGATG	9 cut(s)	827, 1843, 1864, 2065, 2082, 2251, 2698, 2717, 2815
BtsI	GCAGTG	2 cut(s)	106, 1414
BtsIMutI	CAGTG	6 cut(s)	106, 196, 335, 1186, 1414, 2692
BveI	ACCTGC	1 cut(s)	1108
Cac8I	GCNNGC	6 cut(s)	161, 795, 946, 1521, 2488, 2659
CaiI	CAGNNNCTG	2 cut(s)	968, 1970
CciI	TCATGA	1 cut(s)	2110
CfoI	GCGC	5 cut(s)	279, 458, 1105, 2132, 2414
Cfr10I	RCCGGY	3 cut(s)	279, 684, 1652
ClaI	ATCGAT	1 cut(s)	2346
CseI	GACGC	3 cut(s)	57, 129, 1522
Csp6I	GTAC	3 cut(s)	1884, 2004, 2518
CviQI	GTAC	3 cut(s)	1884, 2004, 2518
DraI	TTTAAA	1 cut(s)	733
DraIII	CACNNNGTG	1 cut(s)	1166
DrdI	GACNNNNNNGTC	1 cut(s)	2779
DriI	GACNNNNNGTC	1 cut(s)	435
DseDI	GACNNNNNNGTC	1 cut(s)	2779
EaeI	YGGCCR	1 cut(s)	2608
Eam1104I	CTCTTC	2 cut(s)	3, 2013
Eam1105I	GACNNNNNGTC	1 cut(s)	435
EarI	CTCTTC	2 cut(s)	3, 2013
EciI	GGCGGA	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	762
Eco105I	TACGTA	1 cut(s)	1887
Eco130I	CCWWGG	4 cut(s)	254, 321, 509, 2866
Eco147I	AGGCCT	1 cut(s)	253
Eco24I	GRGCYC	3 cut(s)	131, 764, 1612
Eco47I	GGWCC	7 cut(s)	30, 671, 919, 1448, 1595, 1655, 2555
Eco47III	AGCGCT	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	762
Eco57I	CTGAAG	3 cut(s)	1248, 1761, 1794
Eco72I	CACGTG	2 cut(s)	1163, 1769
Eco81I	CCTNAGG	2 cut(s)	627, 1983
Eco88I	CYCGRG	3 cut(s)	666, 765, 2055
Eco91I	GGTNACC	1 cut(s)	1029
EcoICRI	GAGCTC	1 cut(s)	762
EcoNI	CCTNNNNNAGG	2 cut(s)	513, 2562
EcoO109I	RGGNCCY	4 cut(s)	297, 402, 1448, 2555
EcoO65I	GGTNACC	1 cut(s)	1029
EcoRI	GAATTC	1 cut(s)	2766
EcoRII	CCWGG	6 cut(s)	915, 937, 2295, 2630, 2751, 2824
EcoT14I	CCWWGG	4 cut(s)	254, 321, 509, 2866
EcoT38I	GRGCYC	3 cut(s)	131, 764, 1612
ErhI	CCWWGG	4 cut(s)	254, 321, 509, 2866
FaqI	GGGAC	7 cut(s)	43, 281, 679, 685, 1641, 2250, 2473
FauI	CCCGC	3 cut(s)	55, 187, 392
FauNDI	CATATG	1 cut(s)	1435
FbaI	TGATCA	1 cut(s)	2812
FblI	GTMKAC	3 cut(s)	745, 1579, 2445
FokI	GGATG	9 cut(s)	834, 1830, 1871, 2072, 2089, 2258, 2705, 2724, 2822
FriOI	GRGCYC	3 cut(s)	131, 764, 1612
FspBI	CTAG	8 cut(s)	348, 482, 882, 972, 1452, 1755, 1881, 2106
GlaI	GCGC	5 cut(s)	278, 457, 1104, 2131, 2413
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	960
HaeII	RGCGCY	3 cut(s)	459, 2133, 2415
HaeIII	GGCC	7 cut(s)	253, 298, 404, 904, 1501, 2208, 2610
HgaI	GACGC	3 cut(s)	57, 129, 1522
HhaI	GCGC	5 cut(s)	279, 458, 1105, 2132, 2414
Hin1I	GRCGYC	1 cut(s)	68
Hin6I	GCGC	5 cut(s)	277, 456, 1103, 2130, 2412
HinP1I	GCGC	5 cut(s)	277, 456, 1103, 2130, 2412
HindIII	AAGCTT	1 cut(s)	535
HphI	GGTGA	8 cut(s)	1023, 1031, 1571, 2180, 2300, 2393, 2579, 2807
Hpy166II	GTNNAC	9 cut(s)	106, 335, 674, 746, 797, 1463, 1580, 2446, 2518
Hpy188I	TCNGA	8 cut(s)	1070, 1621, 1813, 1918, 2530, 2680, 2772, 2785
Hpy8I	GTNNAC	9 cut(s)	106, 335, 674, 746, 797, 1463, 1580, 2446, 2518
Hpy99I	CGWCG	1 cut(s)	433
HpyAV	CCTTC	4 cut(s)	204, 1529, 2430, 2849
HpyCH4III	ACNGT	8 cut(s)	34, 82, 243, 1066, 1121, 1235, 1543, 1640
HpyCH4IV	ACGT	4 cut(s)	431, 1162, 1768, 1886
HpySE526I	ACGT	4 cut(s)	431, 1162, 1768, 1886
Hsp92I	GRCGYC	1 cut(s)	68
HspAI	GCGC	5 cut(s)	277, 456, 1103, 2130, 2412
Kpn2I	TCCGGA	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	2812
LmnI	GCTCC	8 cut(s)	26, 134, 137, 627, 773, 941, 1460, 2681
LweI	GCATC	8 cut(s)	1201, 1354, 1781, 2182, 2292, 2719, 2728, 2804
MaeI	CTAG	8 cut(s)	348, 482, 882, 972, 1452, 1755, 1881, 2106
MaeII	ACGT	4 cut(s)	431, 1162, 1768, 1886
MaeIII	GTNAC	4 cut(s)	491, 1029, 1567, 1727
MfeI	CAATTG	2 cut(s)	1797, 2604
MflI	RGATCY	3 cut(s)	1381, 2022, 2278
MhlI	GDGCHC	5 cut(s)	131, 188, 764, 799, 1612
MlsI	TGGCCA	1 cut(s)	2610
MluNI	TGGCCA	1 cut(s)	2610
MlyI	GAGTC	5 cut(s)	445, 1814, 2789, 2795, 2866
MmeI	TCCRAC	3 cut(s)	2074, 2703, 2743
Mox20I	TGGCCA	1 cut(s)	2610
MroI	TCCGGA	1 cut(s)	23
MroXI	GAANNNNTTC	2 cut(s)	1747, 2253
MscI	TGGCCA	1 cut(s)	2610
MseI	TTAA	8 cut(s)	572, 732, 1005, 1085, 1316, 1323, 1359, 1508
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	2610
MspA1I	CMGCKG	3 cut(s)	525, 1592, 2719
MspR9I	CCNGG	8 cut(s)	917, 939, 1848, 2235, 2297, 2632, 2753, 2826
MunI	CAATTG	2 cut(s)	1797, 2604
MvaI	CCWGG	6 cut(s)	917, 939, 2297, 2632, 2753, 2826
MvnI	CGCG	2 cut(s)	793, 1105
NciI	CCSGG	2 cut(s)	1848, 2235
NcoI	CCATGG	1 cut(s)	2866
NdeI	CATATG	1 cut(s)	1435
NmuCI	GTSAC	3 cut(s)	491, 1029, 1727
NspI	RCATGY	1 cut(s)	2762
NspV	TTCGAA	2 cut(s)	236, 1115
PaeR7I	CTCGAG	1 cut(s)	765
PagI	TCATGA	1 cut(s)	2110
PasI	CCCWGGG	2 cut(s)	2631, 2752
PceI	AGGCCT	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	3 cut(s)	65, 242, 1102
PdmI	GAANNNNTTC	2 cut(s)	1747, 2253
PfoI	TCCNGGA	3 cut(s)	937, 1846, 2233
PleI	GAGTC	5 cut(s)	444, 1814, 2788, 2794, 2865
PmaCI	CACGTG	2 cut(s)	1163, 1769
PmlI	CACGTG	2 cut(s)	1163, 1769
PpsI	GAGTC	5 cut(s)	444, 1814, 2788, 2794, 2865
Ppu21I	YACGTR	3 cut(s)	1163, 1769, 1887
PpuMI	RGGWCCY	2 cut(s)	1448, 2555
PshBI	ATTAAT	1 cut(s)	1359
PsiI	TTATAA	1 cut(s)	809
Psp124BI	GAGCTC	1 cut(s)	764
Psp5II	RGGWCCY	2 cut(s)	1448, 2555
Psp6I	CCWGG	6 cut(s)	915, 937, 2295, 2630, 2751, 2824
PspCI	CACGTG	2 cut(s)	1163, 1769
PspEI	GGTNACC	1 cut(s)	1029
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	6 cut(s)	915, 937, 2295, 2630, 2751, 2824
PspPPI	RGGWCCY	2 cut(s)	1448, 2555
PstNI	CAGNNNCTG	2 cut(s)	968, 1970
PsuI	RGATCY	3 cut(s)	1381, 2022, 2278
PvuII	CAGCTG	3 cut(s)	525, 1592, 2719
RsaI	GTAC	3 cut(s)	1885, 2005, 2519
RsaNI	GTAC	3 cut(s)	1884, 2004, 2518
RseI	CAYNNNNRTG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	764
SaqAI	TTAA	8 cut(s)	572, 732, 1005, 1085, 1316, 1323, 1359, 1508
SchI	GAGTC	5 cut(s)	445, 1814, 2789, 2795, 2866
ScrFI	CCNGG	8 cut(s)	917, 939, 1848, 2235, 2297, 2632, 2753, 2826
SduI	GDGCHC	5 cut(s)	131, 188, 764, 799, 1612
SfaNI	GCATC	8 cut(s)	1201, 1354, 1781, 2182, 2292, 2719, 2728, 2804
SfcI	CTRYAG	1 cut(s)	2316
Sfr274I	CTCGAG	1 cut(s)	765
SfuI	TTCGAA	2 cut(s)	236, 1115
SinI	GGWCC	7 cut(s)	30, 671, 919, 1448, 1595, 1655, 2555
SlaI	CTCGAG	1 cut(s)	765
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	765, 2283
SmoI	CTYRAG	2 cut(s)	765, 2283
SnaBI	TACGTA	1 cut(s)	1887
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	6 cut(s)	51, 62, 194, 207, 399, 2690
SspI	AATATT	3 cut(s)	847, 1074, 1357
SspMI	CTAG	8 cut(s)	348, 482, 882, 972, 1452, 1755, 1881, 2106
SstI	GAGCTC	1 cut(s)	764
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	8 cut(s)	915, 937, 1846, 2233, 2295, 2630, 2751, 2824
StyI	CCWWGG	4 cut(s)	254, 321, 509, 2866
TaaI	ACNGT	8 cut(s)	34, 82, 243, 1066, 1121, 1235, 1543, 1640
TaiI	ACGT	4 cut(s)	434, 1165, 1771, 1889
TaqI	TCGA	9 cut(s)	236, 681, 766, 1096, 1115, 2311, 2346, 2842, 2860
TatI	WGTACW	1 cut(s)	2003
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	8 cut(s)	572, 732, 1005, 1085, 1316, 1323, 1359, 1508
Tru9I	TTAA	8 cut(s)	572, 732, 1005, 1085, 1316, 1323, 1359, 1508
TscAI	CASTG	6 cut(s)	106, 196, 342, 1186, 1414, 2692
TseFI	GTSAC	3 cut(s)	491, 1029, 1727
Tsp45I	GTSAC	3 cut(s)	491, 1029, 1727
TspGWI	ACGGA	1 cut(s)	1480
TspRI	CASTG	6 cut(s)	106, 196, 342, 1186, 1414, 2692
VneI	GTGCAC	1 cut(s)	795
VpaK11BI	GGWCC	7 cut(s)	30, 671, 919, 1448, 1595, 1655, 2555
VspI	ATTAAT	1 cut(s)	1359
XagI	CCTNNNNNAGG	2 cut(s)	513, 2562
XapI	RAATTY	4 cut(s)	706, 1264, 1681, 2766
XceI	RCATGY	1 cut(s)	2762
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1666
XhoI	CTCGAG	1 cut(s)	765
XmiI	GTMKAC	3 cut(s)	745, 1579, 2445
XmnI	GAANNNNTTC	2 cut(s)	1747, 2253
XspI	CTAG	8 cut(s)	348, 482, 882, 972, 1452, 1755, 1881, 2106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.