Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031515.1

Orthogroup ID

OG0002807

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 598

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031515.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 515 bp

ctggattctgggcacaaaggtgcttgtccctggagaggaaacagctgcccagaaagcttggtgcaattccctcctactcctcagtctgccttaattggtggttataaggatagatgtgatggacttttgcaatttcactcactccctaaggtagctgcctctgtaattgagcaaatatgggtttctcggggtccacagattgaccgtcttctgtcccagtcccagaattttatggcaggagatgtagatattaaaccagaaagtataccagaattcgaaagctctcgagatggagcaatctgtttatattctcgtgcacagaggcttataagtctttgtggatgggaaccaagatggcttttgaatattcaagattatgaggaacattctgcccaatcagctagaaatggatattctctcgggcctagctatgctcaggtccatctttcacaggatcctggagcaagcaagaaagctatttcagcttctgctagaaaggataatggaaagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0010941 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:1901099 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001239 GO:2001240

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC

Protein Analysis

171

Amino Acids

18.73

Weight (kDa)

7.06

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17210
fragaria_vesca	FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100
malus_domestica	MD03G1137700.v1.1 MD10G1258600.v1.1
prunus_persica	Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1
pyrus_communis	pycom05g26060 pycom10g21510
rosa_chinensis	RchiOBHm_Chr5g0014771
rosa_laevigata	RLG00000032139
rosa_multiflora	Rmu_co8256719.1_g000001 Rmu_co8305615.1_g000001 Rmu_sc0001908.1_g000001 Rmu_sc0028154.1_g000002 Rmu_sc0031515.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061770
rosa_rugosa	Rorug05G0020600 Rorug05G0020700
rosa_samantha	Rh5AG116200 Rh5AG116400 Rh5BG113000 Rh5CG124700 Rh5DG112400 Rh5DG112700
rosa_wichuraiana	Rw5G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	105, 329
AccI	GTMKAC	1 cut(s)	265
AclWI	GGATC	2 cut(s)	449, 462
AcsI	RAATTY	2 cut(s)	226, 272
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	364, 371
AjnI	CCWGG	2 cut(s)	29, 457
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	8 cut(s)	45, 57, 155, 282, 401, 429, 476, 485
AluI	AGCT	8 cut(s)	45, 57, 155, 282, 401, 429, 476, 485
Alw21I	GWGCWC	1 cut(s)	319
Alw44I	GTGCAC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	449, 462
AlwNI	CAGNNNCTG	1 cut(s)	488
Ama87I	CYCGRG	3 cut(s)	186, 285, 419
AoxI	GGCC	1 cut(s)	422
ApaLI	GTGCAC	1 cut(s)	315
ApeKI	GCWGC	2 cut(s)	45, 155
ApoI	RAATTY	2 cut(s)	226, 272
AspS9I	GGNCC	3 cut(s)	191, 422, 439
AsuII	TTCGAA	1 cut(s)	276
AvaI	CYCGRG	3 cut(s)	186, 285, 419
AvaII	GGWCC	2 cut(s)	191, 439
AxyI	CCTNAGG	1 cut(s)	147
BaeGI	GKGCMC	2 cut(s)	15, 319
BamHI	GGATCC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	32, 142
BccI	CCATC	5 cut(s)	113, 284, 336, 348, 450
BciT130I	CCWGG	2 cut(s)	31, 459
BfaI	CTAG	3 cut(s)	402, 426, 492
BisI	GCNGC	2 cut(s)	46, 156
BlsI	GCNGC	2 cut(s)	47, 157
Bme1390I	CCNGG	2 cut(s)	31, 459
Bme18I	GGWCC	2 cut(s)	191, 439
BmeT110I	CYCGRG	3 cut(s)	186, 285, 419
BmgT120I	GGNCC	3 cut(s)	191, 422, 439
BmiI	GGNNCC	3 cut(s)	192, 348, 456
BmrFI	CCNGG	2 cut(s)	31, 459
BmrI	ACTGGG	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	2 cut(s)	52, 480
Bpu10I	CCTNAGC	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	217
Bse21I	CCTNAGG	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	31, 459
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	2 cut(s)	95, 449
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	2 cut(s)	15, 319
BseXI	GCAGC	2 cut(s)	32, 142
BshFI	GGCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	319
BsiHKCI	CYCGRG	3 cut(s)	186, 285, 419
BslFI	GGGAC	3 cut(s)	12, 199, 205
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmFI	GGGAC	3 cut(s)	12, 199, 205
BsnI	GGCC	1 cut(s)	424
BsoBI	CYCGRG	3 cut(s)	186, 285, 419
Bsp119I	TTCGAA	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	15, 319
Bsp143I	GATC	1 cut(s)	454
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	2 cut(s)	94, 448
BspLI	GGNNCC	3 cut(s)	192, 348, 456
BspPI	GGATC	2 cut(s)	449, 462
BspT104I	TTCGAA	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	1 cut(s)	454
BssNAI	GTATAC	1 cut(s)	266
BssSI	CACGAG	1 cut(s)	312
Bst1107I	GTATAC	1 cut(s)	266
Bst2BI	CACGAG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	31, 459
Bst4CI	ACNGT	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	3 cut(s)	81, 147, 435
BstF5I	GGATG	1 cut(s)	347
BstKTI	GATC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 398, 482
BstNI	CCWGG	2 cut(s)	31, 459
BstSCI	CCNGG	2 cut(s)	29, 457
BstSLI	GKGCMC	2 cut(s)	15, 319
BstV1I	GCAGC	2 cut(s)	32, 142
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BstZ17I	GTATAC	1 cut(s)	266
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	466
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	191, 422, 439
DdeI	CTNAG	3 cut(s)	81, 147, 435
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
Eco47I	GGWCC	2 cut(s)	191, 439
Eco81I	CCTNAGG	1 cut(s)	147
Eco88I	CYCGRG	3 cut(s)	186, 285, 419
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	29, 457
FaiI	YATR	8 cut(s)	105, 178, 233, 266, 307, 329, 378, 432
FaqI	GGGAC	3 cut(s)	12, 199, 205
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	46, 156
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	46, 156
FspBI	CTAG	3 cut(s)	402, 426, 492
GluI	GCNGC	2 cut(s)	46, 156
GsuI	CTGGAG	2 cut(s)	52, 480
HaeIII	GGCC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	1 cut(s)	5
Hpy166II	GTNNAC	3 cut(s)	194, 266, 317
Hpy188III	TCNNGA	3 cut(s)	285, 287, 371
Hpy8I	GTNNAC	3 cut(s)	194, 266, 317
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	3 cut(s)	64, 130, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 398, 482
HpyF3I	CTNAG	3 cut(s)	81, 147, 435
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	2 cut(s)	293, 461
Lsp1109I	GCAGC	2 cut(s)	32, 142
MaeI	CTAG	3 cut(s)	402, 426, 492
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	1 cut(s)	200
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	15, 319
MluCI	AATT	6 cut(s)	65, 93, 131, 165, 226, 272
MnlI	CCTC	6 cut(s)	29, 81, 90, 169, 315, 373
MseI	TTAA	2 cut(s)	92, 252
MslI	CAYNNNNRTG	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	31, 459
MvaI	CCWGG	2 cut(s)	31, 459
MwoI	GCNNNNNNNGC	3 cut(s)	54, 398, 482
NdeII	GATC	1 cut(s)	454
NlaIV	GGNNCC	3 cut(s)	192, 348, 456
NspV	TTCGAA	1 cut(s)	276
OliI	CACNNNNGTG	1 cut(s)	18
PaeR7I	CTCGAG	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	47, 157
PsiI	TTATAA	2 cut(s)	105, 329
Psp6I	CCWGG	2 cut(s)	29, 457
PspGI	CCWGG	2 cut(s)	29, 457
PspN4I	GGNNCC	3 cut(s)	192, 348, 456
PspPI	GGNCC	3 cut(s)	191, 422, 439
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	92, 252
SatI	GCNGC	2 cut(s)	46, 156
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	3 cut(s)	191, 422, 439
ScrFI	CCNGG	2 cut(s)	31, 459
SduI	GDGCHC	2 cut(s)	15, 319
Sfr274I	CTCGAG	1 cut(s)	285
SfuI	TTCGAA	1 cut(s)	276
SinI	GGWCC	2 cut(s)	191, 439
SlaI	CTCGAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	6 cut(s)	65, 93, 131, 165, 226, 272
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	3 cut(s)	402, 426, 492
StyD4I	CCNGG	2 cut(s)	29, 457
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	276, 286
TasI	AATT	6 cut(s)	65, 93, 131, 165, 226, 272
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	92, 252
Tru9I	TTAA	2 cut(s)	92, 252
TseI	GCWGC	2 cut(s)	45, 155
VneI	GTGCAC	1 cut(s)	315
VpaK11BI	GGWCC	2 cut(s)	191, 439
XapI	RAATTY	2 cut(s)	226, 272
XhoI	CTCGAG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	3 cut(s)	402, 426, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.