Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001908.1

Orthogroup ID

OG0002807

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 836

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001908.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 766 bp

atggatacaattggtcacagttcagatgatgactctatggcaagtgttgaaaatcatccgggagatattgatgatattcatttcccctcatccagtacctatggaaatctggacatgaatgagacatcagaagtgaattatagtaatcaagctcaacagagcattggttttcaaccagttgctgatgtagttcctgaggaaatgggtgttagtagtactaatgatggggaagaaatcttcaacgctgaaactttgactgctcaggcccgggatgggtttagctttgggatgagtggagggagtgttggaatgtgtgctagtcatgaagctgagattcatggggctgatgtatctgttcatagagcagatagtgtagttggtgatgtggaacccagaacagaagatgctgagaatcagggccagacaggcgaatctgcaccagatcctggactgatggatgaaattgtccctgatgaaataaatagggaagatcctcaaggtgatagccaggagatgctatctcgatctgtagggagggctgatagtggctcaaagattgatggttctactaaggctgaatctgtggagagtggtgaaaaaattagtcaaaagttagagaacagtgcccgcccttctctttcatgcaatgctaatgtatactctaattatggaacaacaaagaaagtggtaaaaaatgctggcaagtcttcatttacaaataattgtgtgtaccaagaatcagagtatgcagttggcaatggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0010941 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:1901099 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001239 GO:2001240

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC

Protein Analysis

255

Amino Acids

27.0

Weight (kDa)

4.18

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17210
fragaria_vesca	FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100
malus_domestica	MD03G1137700.v1.1 MD10G1258600.v1.1
prunus_persica	Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1
pyrus_communis	pycom05g26060 pycom10g21510
rosa_chinensis	RchiOBHm_Chr5g0014771
rosa_laevigata	RLG00000032139
rosa_multiflora	Rmu_co8256719.1_g000001 Rmu_co8305615.1_g000001 Rmu_sc0001908.1_g000001 Rmu_sc0028154.1_g000002 Rmu_sc0031515.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061770
rosa_rugosa	Rorug05G0020600 Rorug05G0020700
rosa_samantha	Rh5AG116200 Rh5AG116400 Rh5BG113000 Rh5CG124700 Rh5DG112400 Rh5DG112700
rosa_wichuraiana	Rw5G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	657
AciI	CCGC	1 cut(s)	628
AclWI	GGATC	2 cut(s)	437, 485
AfaI	GTAC	3 cut(s)	97, 217, 731
AfiI	CCNNNNNNNGG	2 cut(s)	273, 446
AgsI	TTSAA	3 cut(s)	50, 173, 241
AjnI	CCWGG	2 cut(s)	445, 507
AluBI	AGCT	3 cut(s)	152, 282, 329
AluI	AGCT	3 cut(s)	152, 282, 329
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	437, 485
AlwNI	CAGNNNCTG	2 cut(s)	182, 446
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	2 cut(s)	264, 418
AspS9I	GGNCC	2 cut(s)	265, 418
AsuC2I	CCSGG	3 cut(s)	60, 268, 269
AsuHPI	GGTGA	3 cut(s)	392, 512, 605
AvaI	CYCGRG	1 cut(s)	267
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	628
BbsI	GAAGAC	1 cut(s)	699
BccI	CCATC	4 cut(s)	218, 266, 448, 554
BciT130I	CCWGG	2 cut(s)	447, 509
BcnI	CCSGG	3 cut(s)	60, 268, 269
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	528
BglI	GCCNNNNNGGC	1 cut(s)	426
BmcAI	AGTACT	1 cut(s)	217
Bme1390I	CCNGG	5 cut(s)	60, 268, 269, 447, 509
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	265, 418
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	5 cut(s)	60, 268, 269, 447, 509
BmsI	GCATC	2 cut(s)	394, 504
BpiI	GAAGAC	1 cut(s)	699
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	480
BpuMI	CCSGG	3 cut(s)	60, 268, 269
BsaJI	CCNNGG	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 446
Bse1I	ACTGG	2 cut(s)	93, 176
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	2 cut(s)	652, 763
BseBI	CCWGG	2 cut(s)	447, 509
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	5 cut(s)	55, 89, 277, 294, 463
BseLI	CCNNNNNNNGG	2 cut(s)	273, 446
BseMI	GCAATG	2 cut(s)	652, 763
BseMII	CTCAG	4 cut(s)	186, 275, 321, 399
BseNI	ACTGG	2 cut(s)	93, 176
BseSI	GKGCMC	1 cut(s)	628
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	266, 420
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	59, 268
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	273, 446
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	2 cut(s)	266, 420
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	3 cut(s)	442, 490, 524
BspACI	CCGC	1 cut(s)	628
BspANI	GGCC	2 cut(s)	266, 420
BspCNI	CTCAG	4 cut(s)	187, 274, 322, 400
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	390
BspPI	GGATC	2 cut(s)	437, 485
BsrDI	GCAATG	2 cut(s)	652, 763
BsrI	ACTGG	2 cut(s)	93, 176
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	3 cut(s)	442, 490, 524
BssNAI	GTATAC	1 cut(s)	658
Bst1107I	GTATAC	1 cut(s)	658
Bst2UI	CCWGG	2 cut(s)	447, 509
Bst4CI	ACNGT	2 cut(s)	20, 623
BstC8I	GCNNGC	2 cut(s)	628, 700
BstDEI	CTNAG	5 cut(s)	195, 261, 330, 408, 570
BstF5I	GGATG	5 cut(s)	55, 89, 277, 294, 463
BstKTI	GATC	3 cut(s)	445, 493, 527
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	442, 490, 524
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstNI	CCWGG	2 cut(s)	447, 509
BstSCI	CCNGG	5 cut(s)	58, 266, 267, 445, 507
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	628
BstV2I	GAAGAC	1 cut(s)	699
BstX2I	RGATCY	2 cut(s)	442, 490
BstYI	RGATCY	2 cut(s)	442, 490
BstZ17I	GTATAC	1 cut(s)	658
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	266, 420
BtsCI	GGATG	5 cut(s)	55, 89, 277, 294, 463
BtsIMutI	CAGTG	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	628, 700
CaiI	CAGNNNCTG	2 cut(s)	182, 446
CciI	TCATGA	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	265, 418
Cfr9I	CCCGGG	1 cut(s)	267
Csp6I	GTAC	3 cut(s)	96, 216, 730
CspCI	CAANNNNNGTGG	2 cut(s)	666, 701
CviAII	CATG	4 cut(s)	115, 323, 338, 642
CviQI	GTAC	3 cut(s)	96, 216, 730
DdeI	CTNAG	5 cut(s)	195, 261, 330, 408, 570
DpnI	GATC	3 cut(s)	444, 492, 526
DpnII	GATC	3 cut(s)	442, 490, 524
Eco81I	CCTNAGG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	445, 507
FaeI	CATG	4 cut(s)	118, 326, 341, 645
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	4 cut(s)	114, 322, 337, 641
FauI	CCCGC	1 cut(s)	635
FblI	GTMKAC	1 cut(s)	657
FokI	GGATG	5 cut(s)	42, 76, 284, 301, 470
FspBI	CTAG	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	266, 420
HapII	CCGG	2 cut(s)	59, 268
Hin1II	CATG	4 cut(s)	118, 326, 341, 645
HinfI	GANTC	6 cut(s)	32, 334, 412, 431, 578, 737
HpaII	CCGG	2 cut(s)	59, 268
HphI	GGTGA	3 cut(s)	392, 512, 605
Hpy166II	GTNNAC	2 cut(s)	658, 730
Hpy188I	TCNGA	3 cut(s)	25, 130, 742
Hpy188III	TCNNGA	4 cut(s)	110, 194, 323, 522
Hpy8I	GTNNAC	2 cut(s)	658, 730
HpyAV	CCTTC	1 cut(s)	642
HpyCH4III	ACNGT	2 cut(s)	20, 623
HpyCH4V	TGCA	3 cut(s)	437, 645, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
HpyF3I	CTNAG	5 cut(s)	195, 261, 330, 408, 570
Hsp92II	CATG	4 cut(s)	118, 326, 341, 645
Kzo9I	GATC	3 cut(s)	442, 490, 524
LweI	GCATC	2 cut(s)	394, 504
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	444, 492, 526
MboI	GATC	3 cut(s)	442, 490, 524
MboII	GAAGA	5 cut(s)	229, 242, 413, 500, 699
MfeI	CAATTG	1 cut(s)	9
MflI	RGATCY	2 cut(s)	442, 490
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	6 cut(s)	9, 136, 462, 600, 664, 721
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	5 cut(s)	97, 190, 290, 504, 528
MspI	CCGG	2 cut(s)	59, 268
MspR9I	CCNGG	5 cut(s)	60, 268, 269, 447, 509
MunI	CAATTG	1 cut(s)	9
MvaI	CCWGG	2 cut(s)	447, 509
MwoI	GCNNNNNNNGC	1 cut(s)	426
NciI	CCSGG	3 cut(s)	60, 268, 269
NdeII	GATC	3 cut(s)	442, 490, 524
NlaIII	CATG	4 cut(s)	118, 326, 341, 645
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	14
PagI	TCATGA	1 cut(s)	322
PfeI	GAWTC	5 cut(s)	334, 412, 431, 578, 737
PflMI	CCANNNNNTGG	1 cut(s)	446
PfoI	TCCNGGA	2 cut(s)	58, 445
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	445, 507
PspGI	CCWGG	2 cut(s)	445, 507
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	2 cut(s)	265, 418
PstNI	CAGNNNCTG	2 cut(s)	182, 446
PsuI	RGATCY	2 cut(s)	442, 490
RsaI	GTAC	3 cut(s)	97, 217, 731
RsaNI	GTAC	3 cut(s)	96, 216, 730
Sau3AI	GATC	3 cut(s)	442, 490, 524
Sau96I	GGNCC	2 cut(s)	265, 418
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	5 cut(s)	60, 268, 269, 447, 509
SduI	GDGCHC	1 cut(s)	628
SetI	ASST	5 cut(s)	101, 154, 284, 331, 502
SfaNI	GCATC	2 cut(s)	394, 504
SfcI	CTRYAG	1 cut(s)	528
SmaI	CCCGGG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	6 cut(s)	9, 136, 462, 600, 664, 721
SsiI	CCGC	1 cut(s)	628
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	5 cut(s)	58, 266, 267, 445, 507
TaaI	ACNGT	2 cut(s)	20, 623
TaqI	TCGA	1 cut(s)	523
TasI	AATT	6 cut(s)	9, 136, 462, 600, 664, 721
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	5 cut(s)	334, 412, 431, 578, 737
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	9 cut(s)	68, 131, 326, 339, 347, 474, 489, 630, 699
TspMI	CCCGGG	1 cut(s)	267
TspRI	CASTG	1 cut(s)	628
Van91I	CCANNNNNTGG	1 cut(s)	446
XmaI	CCCGGG	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	657
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.