Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002807

Physical Location & Seq

Genomic Coordinates Forward (+)

1350511 .. 1351006

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0020700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGTTCTTCCCAGAAAAGCTCCCAATGGAGGAGCGTCTTCGACGGCGTGAAACTCAAGACCATCCCATCAATGCCAGATCTAATGGCCGAGATCAACACTGCAATTTGCAATCTTGAATACGCACGCGCCTCTGTTCTTCTCGAATCTACGTCCCCTTCTTCTTCCTCTTCTTCAATCTCAAAGAATGAGAGCTCTGCTCAACCTCAGTTTGATGCCCGGAAAGCGGATCAGGCTTACAAGGCAAGCTGTGCTGCCTTGGCTGCTGGGAAGCTCGATGAGGCTCTTCTGTCATTGAATGTTTCGCTTTCGAAATGCCCACCTGATCAGACCTCTGCCGTTGCGAAGCTTCATTCGCTTATCTCTCTCACATCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0010941 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:1901099 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001239 GO:2001240

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC

Protein Analysis

126

Amino Acids

13.28

Weight (kDa)

7.69

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17210
fragaria_vesca	FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100
malus_domestica	MD03G1137700.v1.1 MD10G1258600.v1.1
prunus_persica	Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1
pyrus_communis	pycom05g26060 pycom10g21510
rosa_chinensis	RchiOBHm_Chr5g0014771
rosa_laevigata	RLG00000032139
rosa_multiflora	Rmu_co8256719.1_g000001 Rmu_co8305615.1_g000001 Rmu_sc0001908.1_g000001 Rmu_sc0028154.1_g000002 Rmu_sc0031515.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061770
rosa_rugosa	Rorug05G0020600 Rorug05G0020700
rosa_samantha	Rh5AG116200 Rh5AG116400 Rh5BG113000 Rh5CG124700 Rh5DG112400 Rh5DG112700
rosa_wichuraiana	Rw5G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	129
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	30, 226
AgsI	TTSAA	3 cut(s)	119, 177, 298
AluBI	AGCT	5 cut(s)	21, 195, 249, 274, 349
AluI	AGCT	5 cut(s)	21, 195, 249, 274, 349
Alw21I	GWGCWC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	254, 263
AspLEI	GCGC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	241, 250
BccI	CCATC	2 cut(s)	71, 76
BceAI	ACGGC	2 cut(s)	61, 323
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	220
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	2 cut(s)	255, 264
BlsI	GCNGC	2 cut(s)	256, 265
Bme1390I	CCNGG	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
Bpu14I	TTCGAA	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 226
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	30, 226
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	241, 250
BseYI	CCCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	30, 226
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	4 cut(s)	79, 93, 229, 325
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	129
BspPI	GGATC	1 cut(s)	237
BspQI	GCTCTTC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	4 cut(s)	79, 93, 229, 325
BssT1I	CCWWGG	1 cut(s)	258
Bst6I	CTCTTC	2 cut(s)	175, 291
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	127, 247
BstDEI	CTNAG	2 cut(s)	207, 375
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	82, 96, 232, 328
BstMBI	GATC	4 cut(s)	79, 93, 229, 325
BstMWI	GCNNNNNNNGC	7 cut(s)	224, 233, 242, 251, 260, 263, 355
BstSCI	CCNGG	1 cut(s)	218
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	241, 250
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	127, 247
CfoI	GCGC	1 cut(s)	131
CseI	GACGC	1 cut(s)	25
CviJI	RGCY	9 cut(s)	21, 89, 195, 236, 249, 263, 274, 284, 349
CviKI_1	RGCY	9 cut(s)	21, 89, 195, 236, 249, 263, 274, 284, 349
DdeI	CTNAG	2 cut(s)	207, 375
DpnI	GATC	4 cut(s)	81, 95, 231, 327
DpnII	GATC	4 cut(s)	79, 93, 229, 325
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	175, 291
EarI	CTCTTC	2 cut(s)	175, 291
Ecl136II	GAGCTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	258
FaqI	GGGAC	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	255, 264
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	255, 264
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	2 cut(s)	255, 264
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	3 cut(s)	58, 116, 143
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	104, 111
HpyF10VI	GCNNNNNNNGC	7 cut(s)	224, 233, 242, 251, 260, 263, 355
HpyF3I	CTNAG	2 cut(s)	207, 375
HpySE526I	ACGT	1 cut(s)	152
HspAI	GCGC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	79, 93, 229, 325
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	26, 33
LpnPI	CCDG	6 cut(s)	26, 90, 218, 233, 252, 336
Lsp1109I	GCAGC	2 cut(s)	241, 250
LweI	GCATC	1 cut(s)	205
MaeII	ACGT	1 cut(s)	152
MalI	GATC	4 cut(s)	81, 95, 231, 327
MboI	GATC	4 cut(s)	79, 93, 229, 325
MboII	GAAGA	7 cut(s)	31, 131, 153, 156, 162, 165, 278
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	1 cut(s)	105
MnlI	CCTC	6 cut(s)	24, 142, 178, 216, 274, 343
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	7 cut(s)	224, 233, 242, 251, 260, 263, 355
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	4 cut(s)	79, 93, 229, 325
NmeAIII	GCCGAG	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	256, 265
Psp124BI	GAGCTC	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	79
SacI	GAGCTC	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	291
SatI	GCNGC	2 cut(s)	255, 264
Sau3AI	GATC	4 cut(s)	79, 93, 229, 325
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	9 cut(s)	23, 155, 197, 208, 251, 276, 325, 335, 351
SfaNI	GCATC	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	4 cut(s)	42, 144, 276, 311
TasI	AATT	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	146
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	2 cut(s)	254, 263
TspDTI	ATGAA	1 cut(s)	341
TspRI	CASTG	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.