Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8256719.1

Orthogroup ID

OG0002807

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 613

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8256719.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 223 bp

gtcttcaagactgtcgtgtagaccttgggaaagaggggacttgctgcgccggttagctacttttaagccctcacattggtccggaaaacccaaggtcatcggttcattggcttgtgctaggagaggttgggtgaatgttgatgcagataaagtttcatgcgaatcatgcggagcataccttactttcactttgttgccgacgtggacttctgacgaaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0010941 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:1901099 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001239 GO:2001240

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC

Protein Analysis

73

Amino Acids

8.13

Weight (kDa)

9.16

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17210
fragaria_vesca	FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100
malus_domestica	MD03G1137700.v1.1 MD10G1258600.v1.1
prunus_persica	Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1
pyrus_communis	pycom05g26060 pycom10g21510
rosa_chinensis	RchiOBHm_Chr5g0014771
rosa_laevigata	RLG00000032139
rosa_multiflora	Rmu_co8256719.1_g000001 Rmu_co8305615.1_g000001 Rmu_sc0001908.1_g000001 Rmu_sc0028154.1_g000002 Rmu_sc0031515.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061770
rosa_rugosa	Rorug05G0020600 Rorug05G0020700
rosa_samantha	Rh5AG116200 Rh5AG116400 Rh5BG113000 Rh5CG124700 Rh5DG112400 Rh5DG112700
rosa_wichuraiana	Rw5G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	20
AccIII	TCCGGA	1 cut(s)	81
AciI	CCGC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	7
AjiI	CACGTC	1 cut(s)	202
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Aor13HI	TCCGGA	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	118
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	79
BmsI	GCATC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	24, 91
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	49
BseAI	TCCGGA	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	24, 91
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	50, 82
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	51
Bsp13I	TCCGGA	1 cut(s)	81
BspACI	CCGC	1 cut(s)	169
BspEI	TCCGGA	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	24, 91
BssT1I	CCWWGG	2 cut(s)	24, 91
Bst4CI	ACNGT	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	31
BtrI	CACGTC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	79
CviAII	CATG	2 cut(s)	157, 166
CviJI	RGCY	3 cut(s)	57, 68, 111
CviKI_1	RGCY	3 cut(s)	57, 68, 111
Eco130I	CCWWGG	2 cut(s)	24, 91
Eco47I	GGWCC	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	24, 91
ErhI	CCWWGG	2 cut(s)	24, 91
FaeI	CATG	2 cut(s)	160, 169
FaiI	YATR	3 cut(s)	158, 167, 176
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	2 cut(s)	156, 165
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	118
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	45
HapII	CCGG	2 cut(s)	50, 82
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	2 cut(s)	160, 169
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	1 cut(s)	162
HpaII	CCGG	2 cut(s)	50, 82
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	2 cut(s)	21, 205
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	2 cut(s)	7, 82
Hpy8I	GTNNAC	2 cut(s)	21, 205
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	160, 169
HspAI	GCGC	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	2 cut(s)	63, 95
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	118
MaeII	ACGT	1 cut(s)	201
MnlI	CCTC	3 cut(s)	27, 80, 117
MroI	TCCGGA	1 cut(s)	81
MseI	TTAA	1 cut(s)	64
MspI	CCGG	2 cut(s)	50, 82
MwoI	GCNNNNNNNGC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	160, 169
PfeI	GAWTC	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	64
SatI	GCNGC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	79
SetI	ASST	7 cut(s)	26, 59, 97, 128, 181, 204, 221
SfaNI	GCATC	1 cut(s)	131
SinI	GGWCC	1 cut(s)	79
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	1 cut(s)	118
StyI	CCWWGG	2 cut(s)	24, 91
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	64
Tru9I	TTAA	1 cut(s)	64
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	94, 145
VpaK11BI	GGWCC	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.