Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8305615.1

Orthogroup ID

OG0002807

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 906

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8305615.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 905 bp

caggtccatctttcacaggatcctggagcaagcaagaaagctatttcagcttctgctagaaaggataatggaaagagtaaagttttagttaaggaatccagaggtgatctcaggtcacctttgctggattgcagcttatgtggtgctacagtcagaattttggatttcttaactgttcctcgacctgcacgtttttctccgaacaacattgatattcctgacacaagcaaaaagatgggattgacacgtggtgcaagtgcagccagtggaattagtggttgggttgctgctgacgatgcaaaagaacatactgaagaccgtgatgaagtagcaacaacaactgaagggaatttgattccaaatgcagatgttgatttgaatcttacaatggcagggggtttaacttttaaccggttcggcagagcaggaatggctgataatattaatgatgcagatatgggcagagatctaatgattgggcagccacaaggcagtgaggttggggatcgtgcggcttcatatgaatcaaggggtcccagctctcgtaaacggagtttggaaaaaggaggcagctctgttgataggccacatttaaggacgcagcaggctgatagtgttgaaggaactgtcattgatcgtgatggtgatgaagttacagatggtagacaagattcagctggaccttcaaaacgagcccgcgattcagattttgtagatacatactgttcatctggtgccggtcccagtcattcgatgggtcttgaaatttatacggagggtaatagaggtgcttcatttccacaaggaagtgaccaatacgttggaatccattcgactagggattcagcacgtgcatcttcagtcattgcaatggatacaattggtcacagttcagatgatgactc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0010941 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:1901099 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001239 GO:2001240

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC

Protein Analysis

302

Amino Acids

31.92

Weight (kDa)

5.13

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17210
fragaria_vesca	FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100
malus_domestica	MD03G1137700.v1.1 MD10G1258600.v1.1
prunus_persica	Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1
pyrus_communis	pycom05g26060 pycom10g21510
rosa_chinensis	RchiOBHm_Chr5g0014771
rosa_laevigata	RLG00000032139
rosa_multiflora	Rmu_co8256719.1_g000001 Rmu_co8305615.1_g000001 Rmu_sc0001908.1_g000001 Rmu_sc0028154.1_g000002 Rmu_sc0031515.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061770
rosa_rugosa	Rorug05G0020600 Rorug05G0020700
rosa_samantha	Rh5AG116200 Rh5AG116400 Rh5BG113000 Rh5CG124700 Rh5DG112400 Rh5DG112700
rosa_wichuraiana	Rw5G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	664
AccII	CGCG	1 cut(s)	699
AciI	CCGC	2 cut(s)	512, 697
AclWI	GGATC	3 cut(s)	14, 27, 513
AcsI	RAATTY	3 cut(s)	156, 349, 765
AcuI	CTGAAG	3 cut(s)	333, 363, 843
AcvI	CACGTG	2 cut(s)	248, 851
AdeI	CACNNNGTG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	245
AgeI	ACCGGT	1 cut(s)	411
AgsI	TTSAA	4 cut(s)	379, 620, 687, 764
AjnI	CCWGG	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	262, 294
AluBI	AGCT	6 cut(s)	41, 50, 135, 540, 573, 677
AluI	AGCT	6 cut(s)	41, 50, 135, 540, 573, 677
AlwI	GGATC	3 cut(s)	14, 27, 513
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	6 cut(s)	132, 260, 287, 481, 570, 601
ApoI	RAATTY	3 cut(s)	156, 349, 765
AseI	ATTAAT	1 cut(s)	444
AsiGI	ACCGGT	1 cut(s)	411
Asp700I	GAANNNNTTC	1 cut(s)	829
AspS9I	GGNCC	4 cut(s)	4, 533, 680, 740
AsuHPI	GGTGA	3 cut(s)	108, 116, 656
AvaII	GGWCC	4 cut(s)	4, 533, 680, 740
BamHI	GGATCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	697
BbrPI	CACGTG	2 cut(s)	248, 851
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	6 cut(s)	144, 272, 274, 493, 582, 613
BccI	CCATC	5 cut(s)	15, 229, 635, 653, 748
BciT130I	CCWGG	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	868
BfaI	CTAG	2 cut(s)	57, 837
BfmI	CTRYAG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	868
BglII	AGATCT	1 cut(s)	466
BisI	GCNGC	7 cut(s)	133, 261, 288, 482, 513, 571, 602
BlsI	GCNGC	7 cut(s)	134, 262, 289, 483, 514, 572, 603
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	4 cut(s)	4, 533, 680, 740
BmgT120I	GGNCC	4 cut(s)	4, 533, 680, 740
BmiI	GGNNCC	5 cut(s)	21, 534, 535, 736, 742
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	738
BmsI	GCATC	3 cut(s)	286, 439, 863
BmuI	ACTGGG	1 cut(s)	738
BpiI	GAAGAC	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
BpmI	CTGGAG	1 cut(s)	45
BsaAI	YACGTR	2 cut(s)	248, 851
BsaBI	GATNNNNATC	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	411
Bse118I	RCCGGY	2 cut(s)	411, 737
Bse1I	ACTGG	2 cut(s)	264, 744
Bse3DI	GCAATG	2 cut(s)	864, 876
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	24
BseJI	GATNNNNATC	1 cut(s)	378
BseMI	GCAATG	2 cut(s)	864, 876
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	2 cut(s)	264, 744
BseXI	GCAGC	6 cut(s)	144, 272, 274, 493, 582, 613
BseYI	CCCAGC	1 cut(s)	536
BsgI	GTGCAG	2 cut(s)	171, 279
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	586
BshNI	GGYRCC	1 cut(s)	734
BshTI	ACCGGT	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	412, 738
BslFI	GGGAC	2 cut(s)	519, 726
BsmFI	GGGAC	2 cut(s)	519, 726
BsnI	GGCC	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	5 cut(s)	19, 106, 466, 505, 634
BspACI	CCGC	2 cut(s)	512, 697
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	699
BspLI	GGNNCC	5 cut(s)	21, 534, 535, 736, 742
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	3 cut(s)	14, 27, 513
BspT107I	GGYRCC	1 cut(s)	734
BsrDI	GCAATG	2 cut(s)	864, 876
BsrFI	RCCGGY	2 cut(s)	411, 737
BsrI	ACTGG	2 cut(s)	264, 744
BssAI	RCCGGY	2 cut(s)	411, 737
BssMI	GATC	5 cut(s)	19, 106, 466, 505, 634
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	6 cut(s)	151, 175, 320, 628, 725, 890
BstBAI	YACGTR	2 cut(s)	248, 851
BstC8I	GCNNGC	3 cut(s)	31, 606, 697
BstDEI	CTNAG	1 cut(s)	110
BstEII	GGTNACC	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	699
BstKTI	GATC	5 cut(s)	22, 109, 469, 508, 637
BstMBI	GATC	5 cut(s)	19, 106, 466, 505, 634
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 260, 296, 431
BstNI	CCWGG	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	6 cut(s)	144, 272, 274, 493, 582, 613
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	2 cut(s)	19, 466
BstXI	CCANNNNNNTGG	1 cut(s)	821
BstYI	RGATCY	2 cut(s)	19, 466
BsuI	GTATCC	1 cut(s)	868
BsuRI	GGCC	1 cut(s)	586
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	271, 499
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	3 cut(s)	31, 606, 697
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr10I	RCCGGY	2 cut(s)	411, 737
Cfr13I	GGNCC	4 cut(s)	4, 533, 680, 740
CseI	GACGC	1 cut(s)	607
CspAI	ACCGGT	1 cut(s)	411
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	5 cut(s)	21, 108, 468, 507, 636
DpnII	GATC	5 cut(s)	19, 106, 466, 505, 634
DraIII	CACNNNGTG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	697
Eco47I	GGWCC	4 cut(s)	4, 533, 680, 740
Eco57I	CTGAAG	3 cut(s)	333, 363, 843
Eco72I	CACGTG	2 cut(s)	248, 851
Eco91I	GGTNACC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	697
FaiI	YATR	7 cut(s)	139, 309, 458, 520, 522, 721, 771
FaqI	GGGAC	2 cut(s)	519, 726
FauI	CCCGC	1 cut(s)	704
FauNDI	CATATG	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	7 cut(s)	133, 261, 288, 482, 513, 571, 602
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	7 cut(s)	133, 261, 288, 482, 513, 571, 602
FspBI	CTAG	2 cut(s)	57, 837
GluI	GCNGC	7 cut(s)	133, 261, 288, 482, 513, 571, 602
GsaI	CCCAGC	1 cut(s)	540
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	586
HapII	CCGG	2 cut(s)	412, 738
HgaI	GACGC	1 cut(s)	607
HinfI	GANTC	9 cut(s)	95, 355, 379, 524, 671, 701, 825, 842, 902
HpaII	CCGG	2 cut(s)	412, 738
HphI	GGTGA	3 cut(s)	108, 116, 656
Hpy166II	GTNNAC	2 cut(s)	548, 665
Hpy188I	TCNGA	4 cut(s)	155, 201, 706, 895
Hpy188III	TCNNGA	4 cut(s)	99, 218, 638, 761
Hpy8I	GTNNAC	2 cut(s)	548, 665
HpyAV	CCTTC	3 cut(s)	338, 614, 693
HpyCH4III	ACNGT	6 cut(s)	151, 175, 320, 628, 725, 890
HpyCH4IV	ACGT	4 cut(s)	190, 247, 819, 850
HpyCH4V	TGCA	9 cut(s)	132, 188, 254, 260, 299, 365, 452, 854, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 260, 296, 431
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	4 cut(s)	190, 247, 819, 850
KflI	GGGWCCC	1 cut(s)	533
Kzo9I	GATC	5 cut(s)	19, 106, 466, 505, 634
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	6 cut(s)	144, 272, 274, 493, 582, 613
LweI	GCATC	3 cut(s)	286, 439, 863
MaeI	CTAG	2 cut(s)	57, 837
MaeII	ACGT	4 cut(s)	190, 247, 819, 850
MaeIII	GTNAC	4 cut(s)	114, 652, 809, 884
MalI	GATC	5 cut(s)	21, 108, 468, 507, 636
MboI	GATC	5 cut(s)	19, 106, 466, 505, 634
MboII	GAAGA	2 cut(s)	326, 849
MfeI	CAATTG	1 cut(s)	879
MflI	RGATCY	2 cut(s)	19, 466
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	5 cut(s)	156, 270, 349, 765, 879
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	1 cut(s)	802
MnlI	CCTC	6 cut(s)	95, 189, 490, 560, 769, 779
MroXI	GAANNNNTTC	1 cut(s)	829
MseI	TTAA	6 cut(s)	90, 170, 401, 408, 444, 593
MslI	CAYNNNNRTG	1 cut(s)	869
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	2 cut(s)	412, 738
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	879
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	4 cut(s)	47, 260, 296, 431
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	5 cut(s)	19, 106, 466, 505, 634
NlaIV	GGNNCC	5 cut(s)	21, 534, 535, 736, 742
NmuCI	GTSAC	3 cut(s)	114, 809, 884
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	829
PfeI	GAWTC	8 cut(s)	95, 355, 379, 524, 671, 701, 825, 842
PfoI	TCCNGGA	1 cut(s)	22
PinAI	ACCGGT	1 cut(s)	411
PkrI	GCNGC	7 cut(s)	134, 262, 289, 483, 514, 572, 603
PleI	GAGTC	1 cut(s)	896
PmaCI	CACGTG	2 cut(s)	248, 851
PmlI	CACGTG	2 cut(s)	248, 851
PpsI	GAGTC	1 cut(s)	896
Ppu21I	YACGTR	2 cut(s)	248, 851
PpuMI	RGGWCCY	1 cut(s)	533
PshBI	ATTAAT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	22
PspCI	CACGTG	2 cut(s)	248, 851
PspEI	GGTNACC	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	5 cut(s)	21, 534, 535, 736, 742
PspPI	GGNCC	4 cut(s)	4, 533, 680, 740
PspPPI	RGGWCCY	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	19, 466
PvuII	CAGCTG	1 cut(s)	677
RseI	CAYNNNNRTG	1 cut(s)	869
SaqAI	TTAA	6 cut(s)	90, 170, 401, 408, 444, 593
SatI	GCNGC	7 cut(s)	133, 261, 288, 482, 513, 571, 602
Sau3AI	GATC	5 cut(s)	19, 106, 466, 505, 634
Sau96I	GGNCC	4 cut(s)	4, 533, 680, 740
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	697
SfaNI	GCATC	3 cut(s)	286, 439, 863
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	4 cut(s)	4, 533, 680, 740
SmiMI	CAYNNNNRTG	1 cut(s)	869
Sse9I	AATT	5 cut(s)	156, 270, 349, 765, 879
SsiI	CCGC	2 cut(s)	512, 697
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	2 cut(s)	57, 837
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	6 cut(s)	151, 175, 320, 628, 725, 890
TaiI	ACGT	4 cut(s)	193, 250, 822, 853
TaqI	TCGA	3 cut(s)	181, 752, 833
TasI	AATT	5 cut(s)	156, 270, 349, 765, 879
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	8 cut(s)	95, 355, 379, 524, 671, 701, 825, 842
Tru1I	TTAA	6 cut(s)	90, 170, 401, 408, 444, 593
Tru9I	TTAA	6 cut(s)	90, 170, 401, 408, 444, 593
TscAI	CASTG	2 cut(s)	271, 499
TseFI	GTSAC	3 cut(s)	114, 809, 884
TseI	GCWGC	6 cut(s)	132, 260, 287, 481, 570, 601
Tsp45I	GTSAC	3 cut(s)	114, 809, 884
TspDTI	ATGAA	6 cut(s)	339, 507, 537, 663, 717, 783
TspGWI	ACGGA	2 cut(s)	565, 788
TspRI	CASTG	2 cut(s)	271, 499
VpaK11BI	GGWCC	4 cut(s)	4, 533, 680, 740
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	3 cut(s)	156, 349, 765
XcmI	CCANNNNNNNNNTGG	1 cut(s)	751
XmiI	GTMKAC	1 cut(s)	664
XmnI	GAANNNNTTC	1 cut(s)	829
XspI	CTAG	2 cut(s)	57, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.