Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002807

Physical Location & Seq

Genomic Coordinates Reverse (-)

13958902 .. 13962908

Gene Structure 4007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1137700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2259 bp

ATGAGGGAGGAGGTCATCAGCTCCGGAGGGAACGTTGATCCTGCTCCTGCTGCCAGTTCGGCGGGGGCATCATCGCCAACTGTTCCGGCAAATGTGGGCAGTGTGGATGGGTCGATTCATGGACAAGGCTCTAAAGGAGCATCTATATCTTGTGTTGGTTCGCAACCCCCGATGACCTCTTTGAGCACCAGTGCTGGAGGAGGTGGTGGGGGTAGCTCTGTTTTCGGATCATCAAGACTGTCGTGTAGACCTTGGGAAAGAGGGGACTTACTGCGCCGCTTGGCTACTTTTAAACCATCAAATTGGTTTTCGAAGCCCAAGGTCATCAGTTCACTGGCATGTGCTCGGAGAGGTTGGGTGAATGTTGATGTTGATAAAATTGCATGTGAATCATGCGGCGCATCCCTTGGTTTTGCTTTGTTGCCATCTTGGACTCCTGATGAAGTTCAAAATGCGGGGGATGCCTTTGTAAAGCAGCTGGATTCCGATCACAAAGTTGCTTGTCCTTGGAGAGGAAACAGCTGCCCCGAAAGCCTGGTGCAATTCCCCCCTACCCCTCAGTCTGCTTTAATTGGGGGATATAAGGATAGATGTGATGGACTTTTGCAATTCCACTCTCTACCTAAGGTAGCTGCATCTGCAATTGAGCAAATGTTGGTTTCTCGGGGTCCGCAGGTTGATCGCTTTCTTATGGCAGGGGAAGTAGATTTTAAACCAGAAAGTATACCAGAACAGGAAAGCTCCCGAGATGGATCAATCTGTTTATATTCTCGTGCTCAGAAGCTTATAAGTCTTTGCGGATGGGAACCAAGATGGCTTTTAAACGCGCAAGACTGTGAAGAACATTCTGCCCAATCAGCTAGAAATGGATATTCTCTCGGGCCGACATATGCCCAGGTCCATCTTTCACAAGAACCTGGACCAAGCAAGAAAGCAGTCTCTGCTTCTGCTAGAAAAGATGCTGGAAAGAGTAAAGTGTTGGTTAAGGAATCTAGACGTGATCCCAGATCACCTTTACTAGATTGCAGCTTATGTGGGGCTACAGTTAGAATATTGGATTTCTTAACCATTCCTCGACCTACGCGATTTACTCCCAATAACATTGATCTTCCTGACACAAGCAAAAAATTGGGATTTACACGTGGCGCAAGTGCAGCCAGTGGAATTAGTGGTTGGGTTTCTGCTGATGATGCTGAGAAAGGCCAAACTGAAGACCGTGACGAAGTAGCAACAACAACTGAGGGAAAAACGGATGTTGATTTGAATCTTACTATGGGAGGGGGTTTTACTTTTAATCGGTTTGGCAGACCAGAAATGTCTGAAAACATTCAGGATGGAGATATGGGGAGGGATCTGATGATTGGGCAACCTGCAGGCAGCGAGGTTGGTGATCGAGCCGCTTCATATGAATCAAGGGGTCCCAGTTCTCGTAAGCGGAGTTTGGAAATAGGAGGCAGTTCTGTTGATAGGCCTCATTTAAGGACGCAGCACACTGATAGTGTTGAAGGAACTGTCATTGATCGTGATGGTGATGAAGTTACAGATGGTGGACAATACTCAGCTGGGCCTTCAAAACGTGCTCGTGATTCAGATATGTTCGATACGTACTGTTCCTCTGGTGCTGGTCCCAGTCATTCAATGGGTATTGATATTTACGCTGATGCTAATAGAGTTGCTTCATTTCCGCAAGGTAGCGACCAATTTGGAATCCATTCAAATATGGATTCAGCACGTGCATCTTCAGTCATTGCAATGGATACAATCTGTCATGGCACAGATGATGACTCTATGGAAAGTGTTGAAAATTATCCAGGAGATGTTGATGATGTTCATTTCCCCACTTCTAGTACATATGGAAATCTGGACATGAATGATACATCAGAATTGAATTACAGTAATCAAGCTCAGCAAAGCGTTGGTTTTCAACCTGTGGCTGATGCAGTTCTTGGGGAAATGGGTGTTAGTAGTACAAATGATGGGGAGGAAATTTTTAACACAGAAACTGTGACAGCTCAGGCCAGGGATGGTATTAGTTTCGGGATTAGTGGCGGAAGTGTTGGAATGTGTGCTAGTCATGAAGCTGAGATTCATGGTGCTGATGTATCTGTCCATAGAGCAGATAGTGTAGTTGGAGATGTGGAACCTAGAACAGAAGATGCTGAAAATCAGGGCCAGACAGGTGAATCTGCCCCAGATCCTGGACTAATGGATGAAATTGTCCCTGATGAAATAAATAGGGAAGATCCCCCATGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0010941 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:1901099 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001239 GO:2001240

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC

Protein Analysis

753

Amino Acids

79.58

Weight (kDa)

4.69

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC	PF07967	84 - 208	1.2e-36	NuBaID N-terminal domain (aka zf-C3HC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17210
fragaria_vesca	FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100
malus_domestica	MD03G1137700.v1.1 MD10G1258600.v1.1
prunus_persica	Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1
pyrus_communis	pycom05g26060 pycom10g21510
rosa_chinensis	RchiOBHm_Chr5g0014771
rosa_laevigata	RLG00000032139
rosa_multiflora	Rmu_co8256719.1_g000001 Rmu_co8305615.1_g000001 Rmu_sc0001908.1_g000001 Rmu_sc0028154.1_g000002 Rmu_sc0031515.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061770
rosa_rugosa	Rorug05G0020600 Rorug05G0020700
rosa_samantha	Rh5AG116200 Rh5AG116400 Rh5BG113000 Rh5CG124700 Rh5DG112400 Rh5DG112700
rosa_wichuraiana	Rw5G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	788
Acc36I	ACCTGC	2 cut(s)	664, 1378
AccB7I	CCANNNNNTGG	1 cut(s)	2198
AccI	GTMKAC	2 cut(s)	247, 724
AccII	CGCG	2 cut(s)	827, 1084
AccIII	TCCGGA	1 cut(s)	23
AclI	AACGTT	1 cut(s)	33
AclWI	GGATC	7 cut(s)	32, 235, 760, 995, 1359, 2189, 2237
AcsI	RAATTY	1 cut(s)	1986
AcuI	CTGAAG	2 cut(s)	1230, 1725
AcvI	CACGTG	2 cut(s)	1142, 1733
AfaI	GTAC	3 cut(s)	1607, 1849, 1969
AfiI	CCNNNNNNNGG	2 cut(s)	512, 2198
AflIII	ACRYGT	1 cut(s)	1139
AgsI	TTSAA	9 cut(s)	449, 1264, 1505, 1572, 1638, 1716, 1802, 1888, 1925
AjiI	CACGTC	1 cut(s)	998
AjnI	CCWGG	6 cut(s)	534, 894, 916, 1810, 2018, 2197
AjuI	GAANNNNNNNTTGG	2 cut(s)	1156, 1188
Alw21I	GWGCWC	4 cut(s)	188, 346, 778, 1582
Alw26I	GTCTC	1 cut(s)	943
AlwI	GGATC	7 cut(s)	32, 235, 760, 995, 1359, 2189, 2237
AlwNI	CAGNNNCTG	3 cut(s)	941, 2003, 2198
Ama87I	CYCGRG	3 cut(s)	663, 744, 878
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	6 cut(s)	881, 1201, 1469, 1565, 2016, 2170
ApeKI	GCWGC	8 cut(s)	50, 475, 522, 632, 1026, 1154, 1377, 1486
ApoI	RAATTY	1 cut(s)	1986
Asp700I	GAANNNNTTC	2 cut(s)	1326, 1711
AspLEI	GCGC	4 cut(s)	276, 401, 829, 1148
AspS9I	GGNCC	8 cut(s)	668, 881, 898, 920, 1418, 1565, 1625, 2170
AsuHPI	GGTGA	5 cut(s)	370, 1002, 1400, 1541, 2192
AsuII	TTCGAA	1 cut(s)	311
AvaI	CYCGRG	3 cut(s)	663, 744, 878
AvaII	GGWCC	5 cut(s)	668, 898, 920, 1418, 1625
AxyI	CCTNAGG	1 cut(s)	624
BauI	CACGAG	2 cut(s)	771, 1581
BbrPI	CACGTG	2 cut(s)	1142, 1733
BbsI	GAAGAC	1 cut(s)	1218
Bbv12I	GWGCWC	4 cut(s)	188, 346, 778, 1582
BbvI	GCAGC	8 cut(s)	37, 487, 509, 619, 1038, 1166, 1389, 1498
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BciT130I	CCWGG	6 cut(s)	536, 896, 918, 1812, 2020, 2199
BciVI	GTATCC	1 cut(s)	1750
BcoDI	GTCTC	1 cut(s)	943
BfaI	CTAG	7 cut(s)	861, 951, 993, 1019, 1845, 2070, 2145
BfmI	CTRYAG	2 cut(s)	1041, 1371
BfuAI	ACCTGC	2 cut(s)	664, 1378
BfuI	GTATCC	1 cut(s)	1750
BglI	GCCNNNNNGGC	1 cut(s)	59
BlpI	GCTNAGC	1 cut(s)	1905
Bme1390I	CCNGG	6 cut(s)	536, 896, 918, 1812, 2020, 2199
Bme18I	GGWCC	5 cut(s)	668, 898, 920, 1418, 1625
BmeT110I	CYCGRG	3 cut(s)	663, 744, 878
BmgBI	CACGTC	1 cut(s)	998
BmgT120I	GGNCC	8 cut(s)	668, 881, 898, 920, 1418, 1565, 1625, 2170
BmiI	GGNNCC	6 cut(s)	669, 807, 1419, 1420, 1627, 2142
BmrFI	CCNGG	6 cut(s)	536, 896, 918, 1812, 2020, 2199
BmrI	ACTGGG	2 cut(s)	1416, 1623
BmuI	ACTGGG	2 cut(s)	1416, 1623
BpiI	GAAGAC	1 cut(s)	1218
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	2013
Bpu1102I	GCTNAGC	1 cut(s)	1905
Bpu14I	TTCGAA	1 cut(s)	311
BsaAI	YACGTR	3 cut(s)	1142, 1605, 1733
BsaBI	GATNNNNATC	2 cut(s)	486, 1263
BsaJI	CCNNGG	6 cut(s)	251, 318, 406, 506, 894, 2019
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 2198
Bse1I	ACTGG	6 cut(s)	54, 189, 339, 1158, 1422, 1629
Bse21I	CCTNAGG	1 cut(s)	624
Bse3DI	GCAATG	2 cut(s)	1746, 1758
Bse8I	GATNNNNATC	2 cut(s)	486, 1263
BseAI	TCCGGA	1 cut(s)	23
BseBI	CCWGG	6 cut(s)	536, 896, 918, 1812, 2020, 2199
BseDI	CCNNGG	6 cut(s)	251, 318, 406, 506, 894, 2019
BseGI	GGATG	8 cut(s)	112, 401, 466, 806, 1258, 1339, 2029, 2215
BseJI	GATNNNNATC	2 cut(s)	486, 1263
BseLI	CCNNNNNNNGG	2 cut(s)	512, 2198
BseMI	GCAATG	2 cut(s)	1746, 1758
BseMII	CTCAG	8 cut(s)	572, 791, 1185, 1230, 1572, 1919, 2027, 2073
BseNI	ACTGG	6 cut(s)	54, 189, 339, 1158, 1422, 1629
BseRI	GAGGAG	2 cut(s)	23, 213
BseXI	GCAGC	8 cut(s)	37, 487, 509, 619, 1038, 1166, 1389, 1498
BseYI	CCCAGC	1 cut(s)	1562
BsgI	GTGCAG	1 cut(s)	1173
Bsh1236I	CGCG	2 cut(s)	827, 1084
BshFI	GGCC	6 cut(s)	883, 1203, 1471, 1567, 2018, 2172
BsiHKAI	GWGCWC	4 cut(s)	188, 346, 778, 1582
BsiHKCI	CYCGRG	3 cut(s)	663, 744, 878
BsiSI	CCGG	2 cut(s)	24, 86
BslFI	GGGAC	4 cut(s)	278, 1404, 1611, 2204
BslI	CCNNNNNNNGG	2 cut(s)	512, 2198
BsmAI	GTCTC	1 cut(s)	943
BsmFI	GGGAC	4 cut(s)	278, 1404, 1611, 2204
BsnI	GGCC	6 cut(s)	883, 1203, 1471, 1567, 2018, 2172
BsoBI	CYCGRG	3 cut(s)	663, 744, 878
Bsp119I	TTCGAA	1 cut(s)	311
Bsp1286I	GDGCHC	4 cut(s)	188, 346, 778, 1582
Bsp13I	TCCGGA	1 cut(s)	23
Bsp1720I	GCTNAGC	1 cut(s)	1905
BspANI	GGCC	6 cut(s)	883, 1203, 1471, 1567, 2018, 2172
BspCNI	CTCAG	8 cut(s)	571, 790, 1186, 1231, 1571, 1918, 2026, 2074
BspEI	TCCGGA	1 cut(s)	23
BspFNI	CGCG	2 cut(s)	827, 1084
BspHI	TCATGA	1 cut(s)	2074
BspLI	GGNNCC	6 cut(s)	669, 807, 1419, 1420, 1627, 2142
BspMAI	CTGCAG	1 cut(s)	1375
BspMI	ACCTGC	2 cut(s)	664, 1378
BspPI	GGATC	7 cut(s)	32, 235, 760, 995, 1359, 2189, 2237
BspT104I	TTCGAA	1 cut(s)	311
BsrDI	GCAATG	2 cut(s)	1746, 1758
BsrI	ACTGG	6 cut(s)	54, 189, 339, 1158, 1422, 1629
BssECI	CCNNGG	6 cut(s)	251, 318, 406, 506, 894, 2019
BssNAI	GTATAC	1 cut(s)	725
BssSI	CACGAG	2 cut(s)	771, 1581
BssT1I	CCWWGG	4 cut(s)	251, 318, 406, 506
Bst1107I	GTATAC	1 cut(s)	725
Bst2BI	CACGAG	2 cut(s)	771, 1581
Bst2UI	CCWGG	6 cut(s)	536, 896, 918, 1812, 2020, 2199
Bst4CI	ACNGT	9 cut(s)	82, 240, 836, 1045, 1217, 1513, 1610, 1895, 2005
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstBAI	YACGTR	3 cut(s)	1142, 1605, 1733
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	1375
BstDEI	CTNAG	9 cut(s)	558, 624, 777, 1194, 1239, 1558, 1905, 2013, 2082
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	8 cut(s)	112, 401, 466, 806, 1258, 1339, 2029, 2215
BstFNI	CGCG	2 cut(s)	827, 1084
BstHHI	GCGC	4 cut(s)	276, 401, 829, 1148
BstMAI	GTCTC	1 cut(s)	943
BstMWI	GCNNNNNNNGC	9 cut(s)	50, 59, 461, 531, 638, 857, 941, 1154, 1190
BstNI	CCWGG	6 cut(s)	536, 896, 918, 1812, 2020, 2199
BstNSI	RCATGY	2 cut(s)	342, 387
BstSCI	CCNGG	6 cut(s)	534, 894, 916, 1810, 2018, 2197
BstSFI	CTRYAG	2 cut(s)	1041, 1371
BstSNI	TACGTA	1 cut(s)	1605
BstUI	CGCG	2 cut(s)	827, 1084
BstV1I	GCAGC	8 cut(s)	37, 487, 509, 619, 1038, 1166, 1389, 1498
BstV2I	GAAGAC	1 cut(s)	1218
BstX2I	RGATCY	3 cut(s)	1351, 2194, 2242
BstXI	CCANNNNNNTGG	1 cut(s)	303
BstYI	RGATCY	3 cut(s)	1351, 2194, 2242
BstZ17I	GTATAC	1 cut(s)	725
Bsu36I	CCTNAGG	1 cut(s)	624
BsuI	GTATCC	1 cut(s)	1750
BsuRI	GGCC	6 cut(s)	883, 1203, 1471, 1567, 2018, 2172
BtgZI	GCGATG	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	998
BtsCI	GGATG	8 cut(s)	112, 401, 466, 806, 1258, 1339, 2029, 2215
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	5 cut(s)	106, 196, 332, 1165, 1491
BveI	ACCTGC	2 cut(s)	664, 1378
Cac8I	GCNNGC	1 cut(s)	1375
CaiI	CAGNNNCTG	3 cut(s)	941, 2003, 2198
CciI	TCATGA	1 cut(s)	2074
CfoI	GCGC	4 cut(s)	276, 401, 829, 1148
Cfr13I	GGNCC	8 cut(s)	668, 881, 898, 920, 1418, 1565, 1625, 2170
CseI	GACGC	2 cut(s)	1492, 2242
Csp6I	GTAC	3 cut(s)	1606, 1848, 1968
CviAII	CATG	9 cut(s)	119, 339, 384, 393, 1769, 1867, 2075, 2090, 2250
CviQI	GTAC	3 cut(s)	1606, 1848, 1968
DdeI	CTNAG	9 cut(s)	558, 624, 777, 1194, 1239, 1558, 1905, 2013, 2082
DraI	TTTAAA	3 cut(s)	292, 712, 822
EciI	GGCGGA	1 cut(s)	2064
Eco105I	TACGTA	1 cut(s)	1605
Eco130I	CCWWGG	4 cut(s)	251, 318, 406, 506
Eco147I	AGGCCT	1 cut(s)	1471
Eco47I	GGWCC	5 cut(s)	668, 898, 920, 1418, 1625
Eco57I	CTGAAG	2 cut(s)	1230, 1725
Eco72I	CACGTG	2 cut(s)	1142, 1733
Eco81I	CCTNAGG	1 cut(s)	624
Eco88I	CYCGRG	3 cut(s)	663, 744, 878
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	1418
EcoRII	CCWGG	6 cut(s)	534, 894, 916, 1810, 2018, 2197
EcoT14I	CCWWGG	4 cut(s)	251, 318, 406, 506
ErhI	CCWWGG	4 cut(s)	251, 318, 406, 506
FaeI	CATG	9 cut(s)	122, 342, 387, 396, 1772, 1870, 2078, 2093, 2253
FaqI	GGGAC	4 cut(s)	278, 1404, 1611, 2204
FatI	CATG	9 cut(s)	118, 338, 383, 392, 1768, 1866, 2074, 2089, 2249
FauI	CCCGC	2 cut(s)	55, 448
FauNDI	CATATG	3 cut(s)	889, 1405, 1852
FblI	GTMKAC	2 cut(s)	247, 724
FokI	GGATG	8 cut(s)	119, 388, 473, 813, 1265, 1346, 2036, 2222
FspBI	CTAG	7 cut(s)	861, 951, 993, 1019, 1845, 2070, 2145
GlaI	GCGC	4 cut(s)	275, 400, 828, 1147
GsaI	CCCAGC	1 cut(s)	1566
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	6 cut(s)	883, 1203, 1471, 1567, 2018, 2172
HapII	CCGG	2 cut(s)	24, 86
HgaI	GACGC	2 cut(s)	1492, 2242
HhaI	GCGC	4 cut(s)	276, 401, 829, 1148
Hin1II	CATG	9 cut(s)	122, 342, 387, 396, 1772, 1870, 2078, 2093, 2253
Hin6I	GCGC	4 cut(s)	274, 399, 827, 1146
HinP1I	GCGC	4 cut(s)	274, 399, 827, 1146
HindIII	AAGCTT	1 cut(s)	782
HpaII	CCGG	2 cut(s)	24, 86
HphI	GGTGA	5 cut(s)	370, 1002, 1400, 1541, 2192
Hpy166II	GTNNAC	4 cut(s)	248, 332, 725, 1550
Hpy188I	TCNGA	9 cut(s)	227, 348, 487, 780, 1321, 1356, 1591, 1882, 2258
Hpy8I	GTNNAC	4 cut(s)	248, 332, 725, 1550
HpyAV	CCTTC	2 cut(s)	1499, 1578
HpyCH4III	ACNGT	9 cut(s)	82, 240, 836, 1045, 1217, 1513, 1610, 1895, 2005
HpyCH4IV	ACGT	6 cut(s)	33, 997, 1141, 1576, 1604, 1732
HpyF10VI	GCNNNNNNNGC	9 cut(s)	50, 59, 461, 531, 638, 857, 941, 1154, 1190
HpyF3I	CTNAG	9 cut(s)	558, 624, 777, 1194, 1239, 1558, 1905, 2013, 2082
HpySE526I	ACGT	6 cut(s)	33, 997, 1141, 1576, 1604, 1732
Hsp92II	CATG	9 cut(s)	122, 342, 387, 396, 1772, 1870, 2078, 2093, 2253
HspAI	GCGC	4 cut(s)	274, 399, 827, 1146
KflI	GGGWCCC	1 cut(s)	1418
Kpn2I	TCCGGA	1 cut(s)	23
LmnI	GCTCC	4 cut(s)	26, 49, 137, 746
Lsp1109I	GCAGC	8 cut(s)	37, 487, 509, 619, 1038, 1166, 1389, 1498
MaeI	CTAG	7 cut(s)	861, 951, 993, 1019, 1845, 2070, 2145
MaeII	ACGT	6 cut(s)	33, 997, 1141, 1576, 1604, 1732
MaeIII	GTNAC	3 cut(s)	1217, 1537, 2005
MboII	GAAGA	6 cut(s)	851, 1100, 1223, 1731, 2165, 2252
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	3 cut(s)	1351, 2194, 2242
MhlI	GDGCHC	4 cut(s)	188, 346, 778, 1582
MlyI	GAGTC	2 cut(s)	427, 1778
MmeI	TCCRAC	2 cut(s)	2038, 2110
MroI	TCCGGA	1 cut(s)	23
MroXI	GAANNNNTTC	2 cut(s)	1326, 1711
MseI	TTAA	9 cut(s)	291, 569, 711, 821, 984, 1064, 1293, 1478, 1992
MslI	CAYNNNNRTG	2 cut(s)	337, 1751
MspA1I	CMGCKG	3 cut(s)	478, 522, 1562
MspI	CCGG	2 cut(s)	24, 86
MspR9I	CCNGG	6 cut(s)	536, 896, 918, 1812, 2020, 2199
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	6 cut(s)	536, 896, 918, 1812, 2020, 2199
MvnI	CGCG	2 cut(s)	827, 1084
MwoI	GCNNNNNNNGC	9 cut(s)	50, 59, 461, 531, 638, 857, 941, 1154, 1190
NdeI	CATATG	3 cut(s)	889, 1405, 1852
NlaIII	CATG	9 cut(s)	122, 342, 387, 396, 1772, 1870, 2078, 2093, 2253
NlaIV	GGNNCC	6 cut(s)	669, 807, 1419, 1420, 1627, 2142
NmuCI	GTSAC	2 cut(s)	1217, 2005
NspI	RCATGY	2 cut(s)	342, 387
NspV	TTCGAA	1 cut(s)	311
PagI	TCATGA	1 cut(s)	2074
PceI	AGGCCT	1 cut(s)	1471
PcsI	WCGNNNNNNNCGW	2 cut(s)	167, 1081
PdmI	GAANNNNTTC	2 cut(s)	1326, 1711
PflMI	CCANNNNNTGG	1 cut(s)	2198
PfoI	TCCNGGA	2 cut(s)	1810, 2197
PleI	GAGTC	2 cut(s)	427, 1778
PmaCI	CACGTG	2 cut(s)	1142, 1733
PmlI	CACGTG	2 cut(s)	1142, 1733
PpsI	GAGTC	2 cut(s)	427, 1778
Ppu21I	YACGTR	3 cut(s)	1142, 1605, 1733
PpuMI	RGGWCCY	1 cut(s)	1418
PsiI	TTATAA	1 cut(s)	788
Psp1406I	AACGTT	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	1418
Psp6I	CCWGG	6 cut(s)	534, 894, 916, 1810, 2018, 2197
PspCI	CACGTG	2 cut(s)	1142, 1733
PspFI	CCCAGC	1 cut(s)	1562
PspGI	CCWGG	6 cut(s)	534, 894, 916, 1810, 2018, 2197
PspN4I	GGNNCC	6 cut(s)	669, 807, 1419, 1420, 1627, 2142
PspPI	GGNCC	8 cut(s)	668, 881, 898, 920, 1418, 1565, 1625, 2170
PspPPI	RGGWCCY	1 cut(s)	1418
PstI	CTGCAG	1 cut(s)	1375
PstNI	CAGNNNCTG	3 cut(s)	941, 2003, 2198
PsuI	RGATCY	3 cut(s)	1351, 2194, 2242
PvuII	CAGCTG	3 cut(s)	478, 522, 1562
RsaI	GTAC	3 cut(s)	1607, 1849, 1969
RsaNI	GTAC	3 cut(s)	1606, 1848, 1968
RseI	CAYNNNNRTG	2 cut(s)	337, 1751
SaqAI	TTAA	9 cut(s)	291, 569, 711, 821, 984, 1064, 1293, 1478, 1992
Sau96I	GGNCC	8 cut(s)	668, 881, 898, 920, 1418, 1565, 1625, 2170
SbfI	CCTGCAGG	1 cut(s)	1375
SchI	GAGTC	2 cut(s)	427, 1778
ScrFI	CCNGG	6 cut(s)	536, 896, 918, 1812, 2020, 2199
SdaI	CCTGCAGG	1 cut(s)	1375
SduI	GDGCHC	4 cut(s)	188, 346, 778, 1582
SfcI	CTRYAG	2 cut(s)	1041, 1371
SfuI	TTCGAA	1 cut(s)	311
SinI	GGWCC	5 cut(s)	668, 898, 920, 1418, 1625
SmiMI	CAYNNNNRTG	2 cut(s)	337, 1751
SnaBI	TACGTA	1 cut(s)	1605
Sse8387I	CCTGCAGG	1 cut(s)	1375
SseBI	AGGCCT	1 cut(s)	1471
SspI	AATATT	1 cut(s)	1053
SspMI	CTAG	7 cut(s)	861, 951, 993, 1019, 1845, 2070, 2145
StuI	AGGCCT	1 cut(s)	1471
StyD4I	CCNGG	6 cut(s)	534, 894, 916, 1810, 2018, 2197
StyI	CCWWGG	4 cut(s)	251, 318, 406, 506
TaaI	ACNGT	9 cut(s)	82, 240, 836, 1045, 1217, 1513, 1610, 1895, 2005
TaiI	ACGT	6 cut(s)	36, 1000, 1144, 1579, 1607, 1735
TaqI	TCGA	5 cut(s)	113, 311, 1075, 1393, 1599
TatI	WGTACW	2 cut(s)	1847, 1967
TauI	GCSGC	3 cut(s)	279, 399, 1400
Tru1I	TTAA	9 cut(s)	291, 569, 711, 821, 984, 1064, 1293, 1478, 1992
Tru9I	TTAA	9 cut(s)	291, 569, 711, 821, 984, 1064, 1293, 1478, 1992
TscAI	CASTG	5 cut(s)	106, 196, 339, 1165, 1498
TseFI	GTSAC	2 cut(s)	1217, 2005
TseI	GCWGC	8 cut(s)	50, 475, 522, 632, 1026, 1154, 1377, 1486
Tsp45I	GTSAC	2 cut(s)	1217, 2005
TspGWI	ACGGA	1 cut(s)	1265
TspRI	CASTG	5 cut(s)	106, 196, 339, 1165, 1498
Van91I	CCANNNNNTGG	1 cut(s)	2198
VpaK11BI	GGWCC	5 cut(s)	668, 898, 920, 1418, 1625
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	1986
XbaI	TCTAGA	1 cut(s)	992
XceI	RCATGY	2 cut(s)	342, 387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1636
XmiI	GTMKAC	2 cut(s)	247, 724
XmnI	GAANNNNTTC	2 cut(s)	1326, 1711
XspI	CTAG	7 cut(s)	861, 951, 993, 1019, 1845, 2070, 2145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.