Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002807

Physical Location & Seq

Genomic Coordinates Forward (+)

10241532 .. 10243300

Gene Structure 1769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG112700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGATACAATTGGTCACAGTTCAGATGATGACTCTATGGCAAGTGTTGAAAATCATCCGGGAGATATTGATGATATTCATTTCCCCTCATCCAGTACCTATGGAAATCTGGACATGAATGAGACATCAGAAGTGAATTATAGTAATCAAGCTCAACAGAGCATTGGTTTTCAACCAGTTGCTGATGTAGTTCCTGAGGAAATGGGTGTTAGTAGTACTAATGATGGGGAAGAAATCTTCAACGCTGAAACTTTAACTGCTCAGGCCCGGGATGGGTTTAGCTTTGGGATGAGTGGAGGGAGTGTTGGAATGTGTGCTAGTCATGAAGCTGAGATTCATGGGGCTGATGTATCTGTTCATAGAGCAGATAGTGTAGTTGGTGATGTGGAACCCAGAACAGAAGATGCTGAGAATCAGGGCCAGACAGGCGAATCTGCACCAGATCCTGGACTGATGGATGAAATTGTCCCTGATGAAATAAATAGGGAAGATCCTCAAGGTGATAGCCAGGAGATGCTATCTCGATCTGTAGGGAGGGCTGATAGTGGCTCAAAGATTGATGGTTCTACCAAGGCTGAATCTGTGGAGAGTGGTGAAAAAATTAGTCAAAAGTTAGAGAACAGTGCCCGCCCTTCTCTTTCATGCAATGCTAATGTATACTCTAATTATGGAACAACCAAGAAAGTGGTAAAAAATGCTGGCAAGTCTTCATTTACAAATAATTGTGTGTACCAAGAATCAGAGTATGCAGTTGCCAATGGAATAGGACCTCCAAAAGGCGAGAGCAATTATGAAGAACCTATGGAGTTTGATCCAATTGGCCATCACAACCAGTTCTGCCCCTGGGTCAATGGGAATGTTGCTGCTGCTGGCAGCAGTAGCTGTGGCCCCGACACCAATGCTGATGTTGTTGCTCTTTGTGGGTGGCAGCTGACCTTAGATGCCCTTGATGCTTTGCGTTCCCTGGGGCATGTTGGAATTCAGACATTAGAGTCTGAGTCAGCAGCATCGCAATACAAGGATGATCACCGAAATCCTGGCAAGAAACTCCTTCGACACCATTCTATGAGTCGAAGCCATGGGCAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0010941 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:1901099 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001239 GO:2001240

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC

Protein Analysis

363

Amino Acids

38.7

Weight (kDa)

4.45

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17210
fragaria_vesca	FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100
malus_domestica	MD03G1137700.v1.1 MD10G1258600.v1.1
prunus_persica	Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1
pyrus_communis	pycom05g26060 pycom10g21510
rosa_chinensis	RchiOBHm_Chr5g0014771
rosa_laevigata	RLG00000032139
rosa_multiflora	Rmu_co8256719.1_g000001 Rmu_co8305615.1_g000001 Rmu_sc0001908.1_g000001 Rmu_sc0028154.1_g000002 Rmu_sc0031515.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061770
rosa_rugosa	Rorug05G0020600 Rorug05G0020700
rosa_samantha	Rh5AG116200 Rh5AG116400 Rh5BG113000 Rh5CG124700 Rh5DG112400 Rh5DG112700
rosa_wichuraiana	Rw5G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	991
AccB7I	CCANNNNNTGG	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	657
AciI	CCGC	1 cut(s)	628
AclWI	GGATC	3 cut(s)	437, 485, 806
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	1 cut(s)	978
AfaI	GTAC	3 cut(s)	97, 217, 731
AfiI	CCNNNNNNNGG	3 cut(s)	273, 446, 776
AgsI	TTSAA	3 cut(s)	50, 173, 241
AjnI	CCWGG	5 cut(s)	445, 507, 842, 963, 1036
AluBI	AGCT	5 cut(s)	152, 282, 329, 882, 931
AluI	AGCT	5 cut(s)	152, 282, 329, 882, 931
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	3 cut(s)	437, 485, 806
AlwNI	CAGNNNCTG	3 cut(s)	182, 446, 882
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	4 cut(s)	264, 418, 820, 886
ApeKI	GCWGC	5 cut(s)	863, 866, 873, 928, 1004
ApoI	RAATTY	1 cut(s)	978
AspS9I	GGNCC	4 cut(s)	265, 418, 767, 887
AsuC2I	CCSGG	3 cut(s)	60, 268, 269
AsuHPI	GGTGA	4 cut(s)	392, 512, 605, 1019
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	767
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	628
BalI	TGGCCA	1 cut(s)	822
BbsI	GAAGAC	1 cut(s)	699
BbvI	GCAGC	5 cut(s)	850, 853, 885, 940, 1016
BccI	CCATC	5 cut(s)	218, 266, 448, 554, 831
BcgI	CGANNNNNNTGC	2 cut(s)	881, 915
BciT130I	CCWGG	5 cut(s)	447, 509, 844, 965, 1038
BclI	TGATCA	1 cut(s)	1024
BcnI	CCSGG	3 cut(s)	60, 268, 269
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	528
BglI	GCCNNNNNGGC	1 cut(s)	426
BisI	GCNGC	5 cut(s)	864, 867, 874, 929, 1005
BlsI	GCNGC	5 cut(s)	865, 868, 875, 930, 1006
BmcAI	AGTACT	1 cut(s)	217
Bme1390I	CCNGG	8 cut(s)	60, 268, 269, 447, 509, 844, 965, 1038
Bme18I	GGWCC	1 cut(s)	767
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	4 cut(s)	265, 418, 767, 887
BmiI	GGNNCC	2 cut(s)	390, 889
BmrFI	CCNGG	8 cut(s)	60, 268, 269, 447, 509, 844, 965, 1038
BmsI	GCATC	5 cut(s)	394, 504, 931, 940, 1016
BpiI	GAAGAC	1 cut(s)	699
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	480
BpuMI	CCSGG	3 cut(s)	60, 268, 269
BsaJI	CCNNGG	7 cut(s)	267, 570, 842, 843, 963, 964, 1078
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 446, 776
Bse1I	ACTGG	3 cut(s)	93, 176, 832
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	652
BseBI	CCWGG	5 cut(s)	447, 509, 844, 965, 1038
BseDI	CCNNGG	7 cut(s)	267, 570, 842, 843, 963, 964, 1078
BseGI	GGATG	6 cut(s)	55, 89, 277, 294, 463, 1027
BseLI	CCNNNNNNNGG	3 cut(s)	273, 446, 776
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	5 cut(s)	186, 275, 321, 399, 987
BseNI	ACTGG	3 cut(s)	93, 176, 832
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	5 cut(s)	850, 853, 885, 940, 1016
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	4 cut(s)	266, 420, 822, 888
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	59, 268
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	3 cut(s)	273, 446, 776
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	4 cut(s)	266, 420, 822, 888
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	5 cut(s)	442, 490, 524, 811, 1024
Bsp19I	CCATGG	1 cut(s)	1078
BspACI	CCGC	1 cut(s)	628
BspANI	GGCC	4 cut(s)	266, 420, 822, 888
BspCNI	CTCAG	5 cut(s)	187, 274, 322, 400, 988
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	390, 889
BspPI	GGATC	3 cut(s)	437, 485, 806
BsrDI	GCAATG	1 cut(s)	652
BsrI	ACTGG	3 cut(s)	93, 176, 832
BssECI	CCNNGG	7 cut(s)	267, 570, 842, 843, 963, 964, 1078
BssMI	GATC	5 cut(s)	442, 490, 524, 811, 1024
BssNAI	GTATAC	1 cut(s)	658
BssT1I	CCWWGG	2 cut(s)	570, 1078
Bst1107I	GTATAC	1 cut(s)	658
Bst2UI	CCWGG	5 cut(s)	447, 509, 844, 965, 1038
Bst4CI	ACNGT	2 cut(s)	20, 623
BstC8I	GCNNGC	3 cut(s)	628, 700, 871
BstDEI	CTNAG	6 cut(s)	195, 261, 330, 408, 937, 996
BstDSI	CCRYGG	1 cut(s)	1078
BstENI	CCTNNNNNAGG	1 cut(s)	774
BstF5I	GGATG	6 cut(s)	55, 89, 277, 294, 463, 1027
BstKTI	GATC	5 cut(s)	445, 493, 527, 814, 1027
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	5 cut(s)	442, 490, 524, 811, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	426, 879, 950
BstNI	CCWGG	5 cut(s)	447, 509, 844, 965, 1038
BstNSI	RCATGY	1 cut(s)	974
BstSCI	CCNGG	8 cut(s)	58, 266, 267, 445, 507, 842, 963, 1036
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	5 cut(s)	850, 853, 885, 940, 1016
BstV2I	GAAGAC	1 cut(s)	699
BstX2I	RGATCY	2 cut(s)	442, 490
BstXI	CCANNNNNNTGG	1 cut(s)	685
BstYI	RGATCY	2 cut(s)	442, 490
BstZ17I	GTATAC	1 cut(s)	658
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	4 cut(s)	266, 420, 822, 888
BtgI	CCRYGG	1 cut(s)	1078
BtgZI	GCGATG	1 cut(s)	993
BtsCI	GGATG	6 cut(s)	55, 89, 277, 294, 463, 1027
BtsIMutI	CAGTG	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	628, 700, 871
CaiI	CAGNNNCTG	3 cut(s)	182, 446, 882
CciI	TCATGA	1 cut(s)	322
Cfr13I	GGNCC	4 cut(s)	265, 418, 767, 887
Cfr9I	CCCGGG	1 cut(s)	267
Csp6I	GTAC	3 cut(s)	96, 216, 730
CviAII	CATG	6 cut(s)	115, 323, 338, 642, 971, 1079
CviQI	GTAC	3 cut(s)	96, 216, 730
DdeI	CTNAG	6 cut(s)	195, 261, 330, 408, 937, 996
DpnI	GATC	5 cut(s)	444, 492, 526, 813, 1026
DpnII	GATC	5 cut(s)	442, 490, 524, 811, 1024
DrdI	GACNNNNNNGTC	1 cut(s)	991
DseDI	GACNNNNNNGTC	1 cut(s)	991
EaeI	YGGCCR	1 cut(s)	820
Eco130I	CCWWGG	2 cut(s)	570, 1078
Eco47I	GGWCC	1 cut(s)	767
Eco81I	CCTNAGG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	267
EcoNI	CCTNNNNNAGG	1 cut(s)	774
EcoO109I	RGGNCCY	1 cut(s)	767
EcoRI	GAATTC	1 cut(s)	978
EcoRII	CCWGG	5 cut(s)	445, 507, 842, 963, 1036
EcoT14I	CCWWGG	2 cut(s)	570, 1078
ErhI	CCWWGG	2 cut(s)	570, 1078
FaeI	CATG	6 cut(s)	118, 326, 341, 645, 974, 1082
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	6 cut(s)	114, 322, 337, 641, 970, 1078
FauI	CCCGC	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	1024
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	5 cut(s)	864, 867, 874, 929, 1005
FokI	GGATG	6 cut(s)	42, 76, 284, 301, 470, 1034
Fsp4HI	GCNGC	5 cut(s)	864, 867, 874, 929, 1005
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	5 cut(s)	864, 867, 874, 929, 1005
HaeIII	GGCC	4 cut(s)	266, 420, 822, 888
HapII	CCGG	2 cut(s)	59, 268
Hin1II	CATG	6 cut(s)	118, 326, 341, 645, 974, 1082
HinfI	GANTC	9 cut(s)	32, 334, 412, 431, 578, 737, 992, 998, 1069
HpaII	CCGG	2 cut(s)	59, 268
HphI	GGTGA	4 cut(s)	392, 512, 605, 1019
Hpy166II	GTNNAC	2 cut(s)	658, 730
Hpy188I	TCNGA	5 cut(s)	25, 130, 742, 984, 997
Hpy188III	TCNNGA	4 cut(s)	110, 194, 323, 522
Hpy8I	GTNNAC	2 cut(s)	658, 730
HpyAV	CCTTC	2 cut(s)	642, 1061
HpyCH4III	ACNGT	2 cut(s)	20, 623
HpyCH4V	TGCA	3 cut(s)	437, 645, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	426, 879, 950
HpyF3I	CTNAG	6 cut(s)	195, 261, 330, 408, 937, 996
Hsp92II	CATG	6 cut(s)	118, 326, 341, 645, 974, 1082
Ksp22I	TGATCA	1 cut(s)	1024
Kzo9I	GATC	5 cut(s)	442, 490, 524, 811, 1024
Lsp1109I	GCAGC	5 cut(s)	850, 853, 885, 940, 1016
LweI	GCATC	5 cut(s)	394, 504, 931, 940, 1016
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	5 cut(s)	444, 492, 526, 813, 1026
MboI	GATC	5 cut(s)	442, 490, 524, 811, 1024
MboII	GAAGA	6 cut(s)	229, 242, 413, 500, 699, 806
MfeI	CAATTG	2 cut(s)	9, 816
MflI	RGATCY	2 cut(s)	442, 490
MhlI	GDGCHC	1 cut(s)	628
MlsI	TGGCCA	1 cut(s)	822
MluCI	AATT	9 cut(s)	9, 136, 462, 600, 664, 721, 787, 816, 978
MluNI	TGGCCA	1 cut(s)	822
MlyI	GAGTC	4 cut(s)	26, 1001, 1007, 1078
MmeI	TCCRAC	2 cut(s)	286, 955
MnlI	CCTC	6 cut(s)	97, 190, 290, 504, 528, 780
Mox20I	TGGCCA	1 cut(s)	822
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	822
MspA1I	CMGCKG	1 cut(s)	931
MspI	CCGG	2 cut(s)	59, 268
MspR9I	CCNGG	8 cut(s)	60, 268, 269, 447, 509, 844, 965, 1038
MunI	CAATTG	2 cut(s)	9, 816
MvaI	CCWGG	5 cut(s)	447, 509, 844, 965, 1038
MwoI	GCNNNNNNNGC	3 cut(s)	426, 879, 950
NciI	CCSGG	3 cut(s)	60, 268, 269
NcoI	CCATGG	1 cut(s)	1078
NdeII	GATC	5 cut(s)	442, 490, 524, 811, 1024
NlaIII	CATG	6 cut(s)	118, 326, 341, 645, 974, 1082
NlaIV	GGNNCC	2 cut(s)	390, 889
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	974
PagI	TCATGA	1 cut(s)	322
PasI	CCCWGGG	2 cut(s)	843, 964
PfeI	GAWTC	5 cut(s)	334, 412, 431, 578, 737
PflMI	CCANNNNNTGG	1 cut(s)	446
PfoI	TCCNGGA	2 cut(s)	58, 445
PkrI	GCNGC	5 cut(s)	865, 868, 875, 930, 1006
PleI	GAGTC	4 cut(s)	26, 1000, 1006, 1077
PpsI	GAGTC	4 cut(s)	26, 1000, 1006, 1077
PpuMI	RGGWCCY	1 cut(s)	767
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	5 cut(s)	445, 507, 842, 963, 1036
PspGI	CCWGG	5 cut(s)	445, 507, 842, 963, 1036
PspN4I	GGNNCC	2 cut(s)	390, 889
PspPI	GGNCC	4 cut(s)	265, 418, 767, 887
PspPPI	RGGWCCY	1 cut(s)	767
PstNI	CAGNNNCTG	3 cut(s)	182, 446, 882
PsuI	RGATCY	2 cut(s)	442, 490
PvuII	CAGCTG	1 cut(s)	931
RsaI	GTAC	3 cut(s)	97, 217, 731
RsaNI	GTAC	3 cut(s)	96, 216, 730
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	5 cut(s)	864, 867, 874, 929, 1005
Sau3AI	GATC	5 cut(s)	442, 490, 524, 811, 1024
Sau96I	GGNCC	4 cut(s)	265, 418, 767, 887
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	4 cut(s)	26, 1001, 1007, 1078
ScrFI	CCNGG	8 cut(s)	60, 268, 269, 447, 509, 844, 965, 1038
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	5 cut(s)	394, 504, 931, 940, 1016
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	1 cut(s)	767
SmaI	CCCGGG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	9 cut(s)	9, 136, 462, 600, 664, 721, 787, 816, 978
SsiI	CCGC	1 cut(s)	628
SspI	AATATT	1 cut(s)	1088
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	8 cut(s)	58, 266, 267, 445, 507, 842, 963, 1036
StyI	CCWWGG	2 cut(s)	570, 1078
TaaI	ACNGT	2 cut(s)	20, 623
TaqI	TCGA	3 cut(s)	523, 1054, 1072
TasI	AATT	9 cut(s)	9, 136, 462, 600, 664, 721, 787, 816, 978
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	5 cut(s)	334, 412, 431, 578, 737
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	5 cut(s)	863, 866, 873, 928, 1004
Tsp45I	GTSAC	1 cut(s)	14
TspMI	CCCGGG	1 cut(s)	267
TspRI	CASTG	1 cut(s)	628
Van91I	CCANNNNNTGG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	767
XagI	CCTNNNNNAGG	1 cut(s)	774
XapI	RAATTY	1 cut(s)	978
XceI	RCATGY	1 cut(s)	974
XmaI	CCCGGG	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	657
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.