Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002807

Physical Location & Seq

Genomic Coordinates Reverse (-)

1348189 .. 1349767

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0020600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCAACCTTTCAAGTCTCAACCATATTTCCTTTGAGGGATTCTTCAAATCAAAAGCGTATTCCTAAAGGAGTAGTTATTGTAGCAACCAATAATGCACCAAATGGCAAGGTGAGTCCACTTACTTCTCTTCCCAAGCTCCCAACCAGAAGTTTGGTTGAGGGCTTGGACATGAAAACTGGTGCTTACAAAATTCCAAGCTCCACTGTGCAAAAGGAAATTGATTCTAATCCTACCATTCACAGTACTAATTCTGCATTACATAGTAGTGCAAAACTTTGTGATCCAGTGGTGATGTCTGAGATATATGCAATCATGGAGGTAGTTGCTGATAGAGTGGAGATGCACAAGAACATTGGAGCACAGCGCGACAATTGGAACCACCTCCTTCTGAGTTCCATCAATGTGATCACTCTCACTGCTGCAACCATTGCAGGAATTGCAGCTAGCAGTACTGCAAGTGCTGGAGTACCCTTTACGGCACTCAAGGTCTCTTCCGCTCTTCTCTATGTAGCAGCCACTGGAATGTTGGTGGTGATGAACATGATCCAGCCGTCCCAACTAGCCGAAGAACAGAGAATTGCAGCCAGATTGTTCAAGCAGCTTCATAGCCAGATTCAAACAACAGTGTCTCTTCAAAACCCGAATACAATGGACGTGAAAGAAGCTATAGAGAAAGTGTTGGCATTGGACAGGGCATATCCACTTCCTTTATTAGGTGAAATGCTTGACAAATTTCCCAAAACTGTGGAGCCTGCAATATGGTGGCCGCAACAGAAGCAGCTTAGCCGACGAGGAGTACCTGATCAAGGAATTGAAGGAAGATTGGCAAATAGATCCAACAGTTGGAGTGCAAAACTTGAAGAGGAAATGACAGAGATTGTTGGGGTATTGAAGAGCAAGGATGTGCCAGAGTACCTGAGGTTGACCGAGATAGCCTTGAAAATTAACAGAATTCTAGCCATTTCTGGCCCTCTTTTAACAGGGCTTGCAGCTTTGGGATCTGCTTTTTTGGGTTGTAGTACTTTTGGAGTTTGGAGCGGGATGGTAGGAGTCATTGGGGGAGCTTTGGCAAGTGTGGTGAACACAATAGAGCATGGGGGTCAAGTTGGAATGGTGGTTGAAATGTATAGAAGCAATGCTGGTTTCTTTAGGCTCATGCAAGAGACCATAGAAGCAAATTTAAGAGAAAAAGAAGTTGGGAGAAGGGAGAATGGGCAAGTGCTTGAAATGAAGGTGGCTTTGCAGCTGGGAAGGAGCCTATCAGAACTCAAGCATCTTTCTGTCTTTTCTTATGGAAGCAAGCTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0010941 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:1901099 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001239 GO:2001240

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC

Protein Analysis

437

Amino Acids

47.45

Weight (kDa)

9.15

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroplast_duf	PF14476	102 - 425	1.1e-151	Petal formation-expressed

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17210
fragaria_vesca	FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100 FvH4_3g05100
malus_domestica	MD03G1137700.v1.1 MD10G1258600.v1.1
prunus_persica	Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1 Prupe.4G085100_v2.0.a1
pyrus_communis	pycom05g26060 pycom10g21510
rosa_chinensis	RchiOBHm_Chr5g0014771
rosa_laevigata	RLG00000032139
rosa_multiflora	Rmu_co8256719.1_g000001 Rmu_co8305615.1_g000001 Rmu_sc0001908.1_g000001 Rmu_sc0028154.1_g000002 Rmu_sc0031515.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061770
rosa_rugosa	Rorug05G0020600 Rorug05G0020700
rosa_samantha	Rh5AG116200 Rh5AG116400 Rh5BG113000 Rh5CG124700 Rh5DG112400 Rh5DG112700
rosa_wichuraiana	Rw5G010030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	846
AccBSI	CCGCTC	2 cut(s)	500, 1041
AccII	CGCG	1 cut(s)	369
AciI	CCGC	3 cut(s)	498, 770, 1041
AclWI	GGATC	4 cut(s)	278, 541, 831, 1009
AcoI	YGGCCR	1 cut(s)	767
AcsI	RAATTY	4 cut(s)	192, 734, 954, 1180
AfaI	GTAC	6 cut(s)	247, 454, 471, 801, 917, 1024
AfiI	CCNNNNNNNGG	3 cut(s)	716, 809, 846
AjiI	CACGTC	1 cut(s)	658
AjuI	GAANNNNNNNTTGG	2 cut(s)	1182, 1214
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	4 cut(s)	22, 496, 636, 1160
AlwI	GGATC	4 cut(s)	278, 541, 831, 1009
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	767, 970
ApeKI	GCWGC	8 cut(s)	422, 443, 515, 584, 601, 781, 992, 1246
ApoI	RAATTY	4 cut(s)	192, 734, 954, 1180
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	971
AsuHPI	GGTGA	5 cut(s)	124, 304, 547, 731, 1093
AsuNHI	GCTAGC	1 cut(s)	446
AxyI	CCTNAGG	1 cut(s)	920
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	8 cut(s)	409, 455, 527, 596, 613, 793, 1004, 1258
BccI	CCATC	2 cut(s)	407, 1039
BceAI	ACGGC	2 cut(s)	495, 538
BclI	TGATCA	2 cut(s)	408, 805
BcoDI	GTCTC	4 cut(s)	22, 496, 636, 1160
BfaI	CTAG	4 cut(s)	447, 563, 959, 1312
BfmI	CTRYAG	1 cut(s)	669
BisI	GCNGC	9 cut(s)	423, 444, 516, 585, 602, 770, 782, 993, 1247
BlpI	GCTNAGC	1 cut(s)	785
BlsI	GCNGC	9 cut(s)	424, 445, 517, 586, 603, 771, 783, 994, 1248
BmcAI	AGTACT	3 cut(s)	247, 454, 1024
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	971
BmiI	GGNNCC	3 cut(s)	380, 753, 1259
BmsI	GCATC	2 cut(s)	333, 1285
BmtI	GCTAGC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	785
BpuEI	CTTGAG	2 cut(s)	470, 1256
BsaBI	GATNNNNATC	1 cut(s)	228
BsaI	GGTCTC	2 cut(s)	496, 1160
Bsc4I	CCNNNNNNNGG	3 cut(s)	716, 809, 846
Bse1I	ACTGG	3 cut(s)	184, 287, 526
Bse21I	CCTNAGG	1 cut(s)	920
Bse3DI	GCAATG	2 cut(s)	429, 1144
Bse8I	GATNNNNATC	1 cut(s)	228
BseGI	GGATG	2 cut(s)	910, 1050
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	3 cut(s)	716, 809, 846
BseMI	GCAATG	2 cut(s)	429, 1144
BseMII	CTCAG	3 cut(s)	291, 383, 911
BseNI	ACTGG	3 cut(s)	184, 287, 526
BseRI	GAGGAG	1 cut(s)	810
BseXI	GCAGC	8 cut(s)	409, 455, 527, 596, 613, 793, 1004, 1258
BseYI	CCCAGC	1 cut(s)	1249
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	769, 972
BsiHKAI	GWGCWC	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	3 cut(s)	716, 809, 846
BsmAI	GTCTC	4 cut(s)	22, 496, 636, 1160
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	769, 972
Bso31I	GGTCTC	2 cut(s)	496, 1160
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	6 cut(s)	283, 408, 546, 805, 836, 1001
Bsp1720I	GCTNAGC	1 cut(s)	785
BspACI	CCGC	3 cut(s)	498, 770, 1041
BspANI	GGCC	2 cut(s)	769, 972
BspCNI	CTCAG	3 cut(s)	292, 384, 912
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	380, 753, 1259
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	4 cut(s)	278, 541, 831, 1009
BspQI	GCTCTTC	2 cut(s)	507, 890
BspTNI	GGTCTC	2 cut(s)	496, 1160
BsrBI	CCGCTC	2 cut(s)	500, 1041
BsrDI	GCAATG	2 cut(s)	429, 1144
BsrI	ACTGG	3 cut(s)	184, 287, 526
BssMI	GATC	6 cut(s)	283, 408, 546, 805, 836, 1001
Bst4CI	ACNGT	5 cut(s)	208, 245, 628, 748, 845
Bst6I	CTCTTC	6 cut(s)	135, 499, 507, 639, 858, 890
BstAPI	GCANNNNNTGC	2 cut(s)	431, 440
BstC8I	GCNNGC	4 cut(s)	448, 756, 990, 1304
BstDEI	CTNAG	4 cut(s)	300, 392, 785, 920
BstENI	CCTNNNNNAGG	2 cut(s)	714, 807
BstF5I	GGATG	2 cut(s)	910, 1050
BstFNI	CGCG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	6 cut(s)	286, 411, 549, 808, 839, 1004
BstMAI	GTCTC	4 cut(s)	22, 496, 636, 1160
BstMBI	GATC	6 cut(s)	283, 408, 546, 805, 836, 1001
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 440, 778
BstSFI	CTRYAG	1 cut(s)	669
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	8 cut(s)	409, 455, 527, 596, 613, 793, 1004, 1258
BstX2I	RGATCY	2 cut(s)	836, 1001
BstXI	CCANNNNNNTGG	2 cut(s)	154, 748
BstYI	RGATCY	2 cut(s)	836, 1001
Bsu36I	CCTNAGG	1 cut(s)	920
BsuRI	GGCC	2 cut(s)	769, 972
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	2 cut(s)	910, 1050
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	5 cut(s)	204, 294, 417, 519, 633
Cac8I	GCNNGC	4 cut(s)	448, 756, 990, 1304
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	971
Csp6I	GTAC	6 cut(s)	246, 453, 470, 800, 916, 1023
CviAII	CATG	5 cut(s)	172, 316, 544, 1097, 1159
CviQI	GTAC	6 cut(s)	246, 453, 470, 800, 916, 1023
DdeI	CTNAG	4 cut(s)	300, 392, 785, 920
DpnI	GATC	6 cut(s)	285, 410, 548, 807, 838, 1003
DpnII	GATC	6 cut(s)	283, 408, 546, 805, 836, 1001
EaeI	YGGCCR	1 cut(s)	767
Eam1104I	CTCTTC	6 cut(s)	135, 499, 507, 639, 858, 890
EarI	CTCTTC	6 cut(s)	135, 499, 507, 639, 858, 890
Eco31I	GGTCTC	2 cut(s)	496, 1160
Eco81I	CCTNAGG	1 cut(s)	920
EcoNI	CCTNNNNNAGG	2 cut(s)	714, 807
EcoRI	GAATTC	1 cut(s)	954
FaeI	CATG	5 cut(s)	175, 319, 547, 1100, 1162
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	5 cut(s)	171, 315, 543, 1096, 1158
FauI	CCCGC	1 cut(s)	1034
FbaI	TGATCA	2 cut(s)	408, 805
Fnu4HI	GCNGC	9 cut(s)	423, 444, 516, 585, 602, 770, 782, 993, 1247
FokI	GGATG	2 cut(s)	917, 1057
Fsp4HI	GCNGC	9 cut(s)	423, 444, 516, 585, 602, 770, 782, 993, 1247
FspBI	CTAG	4 cut(s)	447, 563, 959, 1312
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	9 cut(s)	423, 444, 516, 585, 602, 770, 782, 993, 1247
GsaI	CCCAGC	1 cut(s)	1253
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	769, 972
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	5 cut(s)	175, 319, 547, 1100, 1162
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	927
HindII	GTYRAC	1 cut(s)	927
HinfI	GANTC	5 cut(s)	41, 115, 224, 616, 1053
HphI	GGTGA	5 cut(s)	124, 304, 547, 731, 1093
Hpy166II	GTNNAC	3 cut(s)	119, 927, 1084
Hpy188I	TCNGA	3 cut(s)	301, 393, 1267
Hpy8I	GTNNAC	3 cut(s)	119, 927, 1084
Hpy99I	CGWCG	1 cut(s)	795
HpyAV	CCTTC	5 cut(s)	398, 812, 1200, 1228, 1248
HpyCH4III	ACNGT	5 cut(s)	208, 245, 628, 748, 845
HpyCH4IV	ACGT	1 cut(s)	657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 440, 778
HpyF3I	CTNAG	4 cut(s)	300, 392, 785, 920
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	5 cut(s)	175, 319, 547, 1100, 1162
HspAI	GCGC	1 cut(s)	367
Ksp22I	TGATCA	2 cut(s)	408, 805
Kzo9I	GATC	6 cut(s)	283, 408, 546, 805, 836, 1001
LguI	GCTCTTC	2 cut(s)	507, 890
LmnI	GCTCC	7 cut(s)	144, 206, 359, 751, 1038, 1064, 1257
Lsp1109I	GCAGC	8 cut(s)	409, 455, 527, 596, 613, 793, 1004, 1258
LweI	GCATC	2 cut(s)	333, 1285
MaeI	CTAG	4 cut(s)	447, 563, 959, 1312
MaeII	ACGT	1 cut(s)	657
MalI	GATC	6 cut(s)	285, 410, 548, 807, 838, 1003
MbiI	CCGCTC	2 cut(s)	500, 1041
MboI	GATC	6 cut(s)	283, 408, 546, 805, 836, 1001
MboII	GAAGA	9 cut(s)	36, 122, 486, 494, 581, 626, 834, 875, 907
MfeI	CAATTG	1 cut(s)	373
MflI	RGATCY	2 cut(s)	836, 1001
MhlI	GDGCHC	1 cut(s)	364
MlyI	GAGTC	2 cut(s)	124, 1062
MmeI	TCCRAC	3 cut(s)	827, 864, 1090
MnlI	CCTC	8 cut(s)	30, 154, 313, 395, 788, 859, 915, 984
MseI	TTAA	3 cut(s)	948, 980, 1184
MslI	CAYNNNNRTG	3 cut(s)	267, 404, 524
MspA1I	CMGCKG	1 cut(s)	1249
MunI	CAATTG	1 cut(s)	373
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	3 cut(s)	431, 440, 778
NdeII	GATC	6 cut(s)	283, 408, 546, 805, 836, 1001
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	5 cut(s)	175, 319, 547, 1100, 1162
NlaIV	GGNNCC	3 cut(s)	380, 753, 1259
PciSI	GCTCTTC	2 cut(s)	507, 890
PfeI	GAWTC	3 cut(s)	41, 224, 616
PflMI	CCANNNNNTGG	1 cut(s)	846
PkrI	GCNGC	9 cut(s)	424, 445, 517, 586, 603, 771, 783, 994, 1248
PleI	GAGTC	2 cut(s)	123, 1061
PpsI	GAGTC	2 cut(s)	123, 1061
PspFI	CCCAGC	1 cut(s)	1249
PspN4I	GGNNCC	3 cut(s)	380, 753, 1259
PspPI	GGNCC	1 cut(s)	971
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	2 cut(s)	836, 1001
PvuII	CAGCTG	1 cut(s)	1249
RsaI	GTAC	6 cut(s)	247, 454, 471, 801, 917, 1024
RsaNI	GTAC	6 cut(s)	246, 453, 470, 800, 916, 1023
RseI	CAYNNNNRTG	3 cut(s)	267, 404, 524
SapI	GCTCTTC	2 cut(s)	507, 890
SaqAI	TTAA	3 cut(s)	948, 980, 1184
SatI	GCNGC	9 cut(s)	423, 444, 516, 585, 602, 770, 782, 993, 1247
Sau3AI	GATC	6 cut(s)	283, 408, 546, 805, 836, 1001
Sau96I	GGNCC	1 cut(s)	971
ScaI	AGTACT	3 cut(s)	247, 454, 1024
SchI	GAGTC	2 cut(s)	124, 1062
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	2 cut(s)	333, 1285
SfcI	CTRYAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	3 cut(s)	267, 404, 524
SmlI	CTYRAG	2 cut(s)	485, 1271
SmoI	CTYRAG	2 cut(s)	485, 1271
SsiI	CCGC	3 cut(s)	498, 770, 1041
SspMI	CTAG	4 cut(s)	447, 563, 959, 1312
TaaI	ACNGT	5 cut(s)	208, 245, 628, 748, 845
TaiI	ACGT	1 cut(s)	660
TaqII	GACCGA	1 cut(s)	944
TatI	WGTACW	3 cut(s)	245, 452, 1022
TauI	GCSGC	1 cut(s)	772
TfiI	GAWTC	3 cut(s)	41, 224, 616
Tru1I	TTAA	3 cut(s)	948, 980, 1184
Tru9I	TTAA	3 cut(s)	948, 980, 1184
TscAI	CASTG	5 cut(s)	211, 294, 424, 526, 633
TseI	GCWGC	8 cut(s)	422, 443, 515, 584, 601, 781, 992, 1246
TspDTI	ATGAA	4 cut(s)	188, 554, 596, 1247
TspRI	CASTG	5 cut(s)	211, 294, 424, 526, 633
Van91I	CCANNNNNTGG	1 cut(s)	846
XagI	CCTNNNNNAGG	2 cut(s)	714, 807
XapI	RAATTY	4 cut(s)	192, 734, 954, 1180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XspI	CTAG	4 cut(s)	447, 563, 959, 1312
ZrmI	AGTACT	3 cut(s)	247, 454, 1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.