FvH4_3g05900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009934
Physical Location & Seq
Reverse (-)
3423054 .. 3424093
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05900.t1

Sequence Viewer

Length: 303 bp
ATGAAGATTTTGGGGAAGAAGAGGTGGTTGTTGTTTACGAGGTCGATGAGGAAGGAGTCGTGGAGTGTTAGGTGGAAGTACTTGGGGTCTGCCTTCAAGTTCAGGCCCGTGAATTTGCAGCTATCTTTCTACGACGACGTTGTGTTCAAGATCGTTTCGGTTTTTGAGGCGATAGTGTTGGCCCTCAGCATCGCCTTCTTCTACCTTTGTTGCGGCCAGGTTTCATGGAGCACATCCGCCGGAATCAGGTTTCATAGGCAAGCAGGCTGCTGCTTTGCGCTCTCAAGTCTCAATGGAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.51

Weight (kDa)

10.04

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 213, 237
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 246
AgsI TTSAA 2 cut(s) 97, 148
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 293
AoxI GGCC 3 cut(s) 104, 180, 214
ApeKI GCWGC 3 cut(s) 118, 267, 270
ApoI RAATTY 1 cut(s) 112
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 105, 181
Bbv12I GWGCWC 1 cut(s) 233
BbvCI CCTCAGC 1 cut(s) 185
BbvI GCAGC 3 cut(s) 130, 254, 257
BciT130I CCWGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 293
BisI GCNGC 4 cut(s) 119, 214, 268, 271
BlsI GCNGC 4 cut(s) 120, 215, 269, 272
BmcAI AGTACT 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 105, 181
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 199
BseXI GCAGC 3 cut(s) 130, 254, 257
BshFI GGCC 3 cut(s) 106, 182, 216
BsiHKAI GWGCWC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 3 cut(s) 106, 182, 216
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 2 cut(s) 213, 237
BspANI GGCC 3 cut(s) 106, 182, 216
BspCNI CTCAG 1 cut(s) 198
BssMI GATC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 261, 265
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 233
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 1 cut(s) 150
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstV1I GCAGC 3 cut(s) 130, 254, 257
BsuRI GGCC 3 cut(s) 106, 182, 216
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 1 cut(s) 233
Cac8I GCNNGC 2 cut(s) 261, 265
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 105, 181
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 225
CviJI RGCY 5 cut(s) 106, 121, 182, 216, 267
CviKI_1 RGCY 5 cut(s) 106, 121, 182, 216, 267
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 185
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 216
FaeI CATG 1 cut(s) 228
FaiI YATR 3 cut(s) 226, 255, 301
FatI CATG 1 cut(s) 224
Fnu4HI GCNGC 4 cut(s) 119, 214, 268, 271
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 4 cut(s) 119, 214, 268, 271
GlaI GCGC 1 cut(s) 279
GluI GCNGC 4 cut(s) 119, 214, 268, 271
HaeIII GGCC 3 cut(s) 106, 182, 216
HapII CCGG 1 cut(s) 240
HhaI GCGC 1 cut(s) 280
Hin1II CATG 1 cut(s) 228
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 2 cut(s) 56, 243
HpaII CCGG 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 36
Hpy99I CGWCG 2 cut(s) 137, 140
HpyAV CCTTC 3 cut(s) 46, 103, 205
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 118
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 228
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 6 cut(s) 88, 203, 230, 232, 249, 253
Lsp1109I GCAGC 3 cut(s) 130, 254, 257
LweI GCATC 1 cut(s) 198
MaeII ACGT 1 cut(s) 138
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 4 cut(s) 16, 28, 31, 190
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 5 cut(s) 15, 33, 42, 160, 194
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
NdeII GATC 1 cut(s) 150
NlaIII CATG 1 cut(s) 228
PfeI GAWTC 1 cut(s) 243
PkrI GCNGC 4 cut(s) 120, 215, 269, 272
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspPI GGNCC 2 cut(s) 105, 181
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SatI GCNGC 4 cut(s) 119, 214, 268, 271
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 105, 181
ScaI AGTACT 1 cut(s) 80
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 233
SetI ASST 8 cut(s) 26, 44, 74, 123, 141, 207, 222, 251
SfaNI GCATC 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 1 cut(s) 112
SsiI CCGC 2 cut(s) 213, 237
StyD4I CCNGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 44
TasI AATT 1 cut(s) 112
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 1 cut(s) 243
TseI GCWGC 3 cut(s) 118, 267, 270
TspDTI ATGAA 3 cut(s) 17, 213, 242
XapI RAATTY 1 cut(s) 112
ZrmI AGTACT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.