RchiOBHm_Chr7g0229651

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
53215763 .. 53215984
222 bp
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UTR
Exon/CDS
Intron
PRQ20573

Sequence Viewer

Length: 222 bp
ATGTTGGGGAAGAAGAGGTGGTTCTTGTTTAGGAGGTCGATGAGGAAGGAATCGTGGAGTGTTAGGTGGAAGTACTTGGGGTCTGCCTTCAAGTTTAGGCCGGTGAATCTCCAGCTCTCCTTCTACGACAACGTTGTGTTCAAGATTGTTTCAGTCTTTGAGGCCATAGTGTTGGAGCTGAGCATCGCTTTCTTCTACCTTTGTTGCGGTTGCAGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.79

Weight (kDa)

9.95

Isoelectric Point (pI)

58.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AclI AACGTT 1 cut(s) 132
AfaI GTAC 1 cut(s) 74
AgsI TTSAA 2 cut(s) 91, 142
AluBI AGCT 3 cut(s) 115, 178, 216
AluI AGCT 3 cut(s) 115, 178, 216
AlwNI CAGNNNCTG 1 cut(s) 219
AoxI GGCC 2 cut(s) 98, 162
ApeKI GCWGC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 115
BisI GCNGC 1 cut(s) 214
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 215
BmcAI AGTACT 1 cut(s) 74
BmsI GCATC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 95
Bpu1102I GCTNAGC 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 100
BseMII CTCAG 1 cut(s) 170
BshFI GGCC 2 cut(s) 100, 164
BsiSI CCGG 1 cut(s) 101
BsnI GGCC 2 cut(s) 100, 164
Bsp1720I GCTNAGC 1 cut(s) 179
BspACI CCGC 1 cut(s) 207
BspANI GGCC 2 cut(s) 100, 164
BspCNI CTCAG 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstXI CCANNNNNNTGG 1 cut(s) 172
BsuRI GGCC 2 cut(s) 100, 164
BtgZI GCGATG 1 cut(s) 169
CaiI CAGNNNCTG 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 100
Csp6I GTAC 1 cut(s) 73
CviJI RGCY 5 cut(s) 100, 115, 164, 178, 216
CviKI_1 RGCY 5 cut(s) 100, 115, 164, 178, 216
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
FaiI YATR 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 2 cut(s) 100, 164
HapII CCGG 1 cut(s) 101
HinfI GANTC 2 cut(s) 50, 106
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 1 cut(s) 142
HpyAV CCTTC 3 cut(s) 40, 97, 130
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 132
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 2 cut(s) 114, 125
LweI GCATC 1 cut(s) 192
MaeII ACGT 1 cut(s) 132
MboII GAAGA 3 cut(s) 22, 25, 184
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 4 cut(s) 9, 27, 36, 154
MspI CCGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 213
PfeI GAWTC 2 cut(s) 50, 106
PkrI GCNGC 1 cut(s) 215
Psp1406I AACGTT 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 219
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SatI GCNGC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 74
SetI ASST 8 cut(s) 20, 38, 68, 117, 135, 180, 201, 218
SfaNI GCATC 1 cut(s) 192
SgeI CNNG 7 cut(s) 37, 66, 88, 103, 113, 124, 154
SsiI CCGC 1 cut(s) 207
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 38
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 2 cut(s) 50, 106
TseI GCWGC 1 cut(s) 213
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.