Rorug05G0010500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009934
Physical Location & Seq
Reverse (-)
659581 .. 660282
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0010500.1

Sequence Viewer

Length: 702 bp
ATGCTCGCTATGAAACTTACCTACATCAACGCTCTATCAAGCTTGTGCGACAAAACAAATGGTGCCGATATAGGCATCGTTGGACAACTACTTGGAGAAGATTATAGACTGGACAACAACTACATGACTGCCACATTAGGAATTGGAGGCCAAGAACTGATGAAAGATACTTTGTACATGAAGTATGCTTTTAGTGAAGCTGGATTGTACCACGAGGCAATGCTGACTAAGAAGGTTGTTCATTTAGACGTGAAGAGGAGAAAGGAGTTTGTTCAGCTAATGTTACGGAAAATGCTCTCACTTAGGAACAGAAGGATTACCATATTCGGAGTCACGTATAAGAGCCGGGTTCTCGATCTCACAAGATCACCCGCGATTAGCGTATGCAAAGCCCTACTGAGAGAGGGTGCTTTCCTCCACATATATGAGCCGTCAGTAGATGAGCCAAGAATCCGGCAACTTCTTGGTAATCCTGAAGCAGTGGACATTTTCGATGATGATCCTATAGAGGCATGTAATGGCGCACATGCAGTTGCATTTTTGGTGCCAATGCACCAGCTACAATTTAATTTTCAAGGAATATTCAATGTGATGACAGACCAACCAGGAGGTCGATATTTGTTTATGGGCTGGCACATGAATGTCAATTTCGACATTCTGAGACAGATGGGCTTCCTAGTTTATATTAGTGGAAAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.49

Weight (kDa)

8.37

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh PF00984 1 - 72 2.7e-11 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 108 - 198 6e-11 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 62, 544
AccII CGCG 1 cut(s) 374
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 2 cut(s) 176, 209
AgsI TTSAA 2 cut(s) 575, 586
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 4 cut(s) 42, 200, 277, 559
AluI AGCT 4 cut(s) 42, 200, 277, 559
Alw26I GTCTC 1 cut(s) 655
AlwI GGATC 1 cut(s) 494
AoxI GGCC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 524
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 360
BanI GGYRCC 2 cut(s) 62, 544
BauI CACGAG 1 cut(s) 212
BccI CCATC 1 cut(s) 661
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 606
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 655
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 504
Bme1390I CCNGG 2 cut(s) 347, 606
BmgBI CACGTC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 64, 546
BmrFI CCNGG 2 cut(s) 347, 606
BmsI GCATC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 347
BsaAI YACGTR 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 498
Bse1I ACTGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 606
BseJI GATNNNNATC 1 cut(s) 498
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 389, 650
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 374
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 2 cut(s) 62, 544
BsiSI CCGG 2 cut(s) 346, 454
BsmAI GTCTC 1 cut(s) 655
BsnI GGCC 1 cut(s) 150
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 3 cut(s) 355, 365, 499
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 390, 651
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 2 cut(s) 64, 546
BspPI GGATC 1 cut(s) 494
BspT107I GGYRCC 2 cut(s) 62, 544
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 1 cut(s) 114
BssMI GATC 3 cut(s) 355, 365, 499
BssSI CACGAG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 606
Bst6I CTCTTC 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 6, 632
BstDEI CTNAG 5 cut(s) 228, 302, 398, 659, 699
BstFNI CGCG 1 cut(s) 374
BstHHI GCGC 1 cut(s) 524
BstKTI GATC 3 cut(s) 358, 368, 502
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 3 cut(s) 355, 365, 499
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 2 cut(s) 516, 530
BstSCI CCNGG 2 cut(s) 345, 604
BstSFI CTRYAG 1 cut(s) 504
BstUI CGCG 1 cut(s) 374
BsuRI GGCC 1 cut(s) 150
BtrI CACGTC 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 2 cut(s) 6, 632
CfoI GCGC 1 cut(s) 524
Csp6I GTAC 2 cut(s) 175, 208
CviAII CATG 5 cut(s) 124, 178, 513, 527, 637
CviQI GTAC 2 cut(s) 175, 208
DdeI CTNAG 5 cut(s) 228, 302, 398, 659, 699
DpnI GATC 3 cut(s) 357, 367, 501
DpnII GATC 3 cut(s) 355, 365, 499
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 604
FaeI CATG 5 cut(s) 127, 181, 516, 530, 640
FatI CATG 5 cut(s) 123, 177, 512, 526, 636
FauI CCCGC 1 cut(s) 379
FspBI CTAG 1 cut(s) 677
GlaI GCGC 1 cut(s) 523
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 346, 454
HhaI GCGC 1 cut(s) 524
Hin1II CATG 5 cut(s) 127, 181, 516, 530, 640
Hin6I GCGC 1 cut(s) 522
HinP1I GCGC 1 cut(s) 522
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 2 cut(s) 330, 450
HpaII CCGG 2 cut(s) 346, 454
HphI GGTGA 1 cut(s) 360
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 2 cut(s) 329, 660
Hpy188III TCNNGA 2 cut(s) 353, 473
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 2 cut(s) 226, 306
HpyCH4IV ACGT 2 cut(s) 249, 335
HpyCH4V TGCA 4 cut(s) 387, 530, 536, 553
HpyF3I CTNAG 5 cut(s) 228, 302, 398, 659, 699
HpySE526I ACGT 2 cut(s) 249, 335
Hsp92II CATG 5 cut(s) 127, 181, 516, 530, 640
HspAI GCGC 1 cut(s) 522
Kzo9I GATC 3 cut(s) 355, 365, 499
LpnPI CCDG 9 cut(s) 95, 186, 359, 467, 486, 569, 591, 616, 618
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 677
MaeII ACGT 2 cut(s) 249, 335
MaeIII GTNAC 2 cut(s) 282, 331
MalI GATC 3 cut(s) 357, 367, 501
MboI GATC 3 cut(s) 355, 365, 499
MboII GAAGA 2 cut(s) 110, 265
MluCI AATT 4 cut(s) 141, 563, 568, 646
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 7 cut(s) 140, 208, 249, 397, 425, 502, 602
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 2 cut(s) 423, 639
MspI CCGG 2 cut(s) 346, 454
MspR9I CCNGG 2 cut(s) 347, 606
MvaI CCWGG 1 cut(s) 606
MvnI CGCG 1 cut(s) 374
NciI CCSGG 1 cut(s) 347
NdeII GATC 3 cut(s) 355, 365, 499
NlaIII CATG 5 cut(s) 127, 181, 516, 530, 640
NlaIV GGNNCC 2 cut(s) 64, 546
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 2 cut(s) 516, 530
PfeI GAWTC 1 cut(s) 450
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 64, 546
RsaI GTAC 2 cut(s) 176, 209
RsaNI GTAC 2 cut(s) 175, 208
RseI CAYNNNNRTG 2 cut(s) 423, 639
SaqAI TTAA 1 cut(s) 567
Sau3AI GATC 3 cut(s) 355, 365, 499
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 2 cut(s) 347, 606
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 423, 639
Sse9I AATT 4 cut(s) 141, 563, 568, 646
SsiI CCGC 1 cut(s) 372
SspI AATATT 1 cut(s) 582
SspMI CTAG 1 cut(s) 677
StyD4I CCNGG 2 cut(s) 345, 604
TaiI ACGT 2 cut(s) 252, 338
TaqI TCGA 4 cut(s) 354, 492, 613, 651
TasI AATT 4 cut(s) 141, 563, 568, 646
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 5 cut(s) 26, 176, 194, 230, 653
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 1 cut(s) 486
XceI RCATGY 2 cut(s) 516, 530
XspI CTAG 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.