RchiOBHm_Chr5g0013541

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
9116049 .. 9116574
526 bp
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UTR
Exon/CDS
Intron
PRQ29406

Sequence Viewer

Length: 222 bp
ATGATGGGGAAGAAGAGGTGGTTGTTGTTTAGGAGGTCGATGAGAAAGGAATCGTGGAGTGTTAGGTGGAAGTATTTGGGGTCTGCCTTCAAGTTTAGGCCGGTGAATCTCCAGCTTTCTTTCTACGATGACGTTGTGTTCAAGATTGTTTCAGTTTTTGAGGCTATAGTGTTGGCGCTCAGCATCGCTTTCTTCTACCTTTGCTGCGGTTGCAGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.72

Weight (kDa)

9.95

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AgsI TTSAA 2 cut(s) 91, 142
AluBI AGCT 2 cut(s) 115, 216
AluI AGCT 2 cut(s) 115, 216
AlwNI CAGNNNCTG 1 cut(s) 219
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 204, 213
AspLEI GCGC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 115
BbvI GCAGC 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 179
BisI GCNGC 2 cut(s) 205, 214
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 2 cut(s) 206, 215
BmsI GCATC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 95
Bpu1102I GCTNAGC 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 100
BseMII CTCAG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 100
BsiSI CCGG 1 cut(s) 101
BsnI GGCC 1 cut(s) 100
Bsp1720I GCTNAGC 1 cut(s) 179
BspACI CCGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstMWI GCNNNNNNNGC 2 cut(s) 210, 213
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 100
BtgZI GCGATG 1 cut(s) 169
CaiI CAGNNNCTG 1 cut(s) 219
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 100
CviJI RGCY 4 cut(s) 100, 115, 164, 216
CviKI_1 RGCY 4 cut(s) 100, 115, 164, 216
DdeI CTNAG 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
FaiI YATR 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 205, 214
Fsp4HI GCNGC 2 cut(s) 205, 214
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 205, 214
GsuI CTGGAG 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 101
HhaI GCGC 1 cut(s) 178
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 2 cut(s) 50, 106
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 213
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 132
HspAI GCGC 1 cut(s) 176
LpnPI CCDG 2 cut(s) 114, 125
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 192
MaeII ACGT 1 cut(s) 132
MboII GAAGA 3 cut(s) 22, 25, 184
MnlI CCTC 3 cut(s) 9, 27, 154
MspI CCGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 210, 213
PfeI GAWTC 2 cut(s) 50, 106
PkrI GCNGC 2 cut(s) 206, 215
PstNI CAGNNNCTG 1 cut(s) 219
SatI GCNGC 2 cut(s) 205, 214
SetI ASST 7 cut(s) 20, 38, 68, 117, 135, 201, 218
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 165
SgeI CNNG 5 cut(s) 66, 103, 113, 124, 154
SsiI CCGC 1 cut(s) 207
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 38
TfiI GAWTC 2 cut(s) 50, 106
TseI GCWGC 2 cut(s) 204, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.