Rh1BG383500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009934
Physical Location & Seq
Reverse (-)
51186997 .. 51190248
3252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG383500.1

Sequence Viewer

Length: 579 bp
ATGTTGGGGAAGAAGAGGTGGTTGTTGTTTAGGAGGTCGATGAGGAAGGAATCGTGGAGTGTTAGGTGGAAGTACTTGGGGTCTGCCTTCAAGTTTAGACCGGTGAATCTCCAGCTCTCTTTCTACGACGACGTTGTGTTCAAGATTGTTTCAGTTTTTGAGGCCATAGTGCATCGCTTTCTTCTACCTTTGTTGCGGTTTGAGAGCTTATCGGTGGAAGCCAGAGAGAAGAGAGGCTTGAATATTTTGGAAAATCGGTTGGATGAATTAAAGCTGAATAAGGAGGCATCTGCGAGTATCTTGATTTGTTTCGTTATGGGTCAGGTAAGGCAAGCATCTCCAAGAACTGAACGTGCTGTGCTACTCCTTGATGTCGTATCATGTCCTTGCTTCCATTGGAGAGACTTGCCCCAATCTCAGGGTGCTTGTGCTAGAATTGTAGACCAGGAATCACCTGAAGCTTTTAAGATCAACCTGGACAGAATGCTTAATTGTTGTTTATGCTTGGAGGTTGATTCTGTTATGATCCAAGTGGTGGAAGTGAGGTTGAAACATCAAGACTTGTACCCTCCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

22.43

Weight (kDa)

9.17

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 535
AccI GTMKAC 1 cut(s) 441
AciI CCGC 1 cut(s) 196
AclWI GGATC 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 2 cut(s) 74, 566
AfiI CCNNNNNNNGG 2 cut(s) 418, 535
AgeI ACCGGT 1 cut(s) 100
AgsI TTSAA 4 cut(s) 91, 142, 241, 550
AjnI CCWGG 2 cut(s) 444, 474
AluBI AGCT 4 cut(s) 115, 207, 274, 461
AluI AGCT 4 cut(s) 115, 207, 274, 461
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 1 cut(s) 520
AoxI GGCC 1 cut(s) 162
AsiGI ACCGGT 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 115, 444
BciT130I CCWGG 2 cut(s) 446, 476
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 1 cut(s) 432
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 2 cut(s) 446, 476
BmrFI CCNGG 2 cut(s) 446, 476
BmsI GCATC 3 cut(s) 181, 296, 344
BpmI CTGGAG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 535
Bse118I RCCGGY 1 cut(s) 100
BseBI CCWGG 2 cut(s) 446, 476
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 418, 535
BseMII CTCAG 1 cut(s) 431
BseRI GAGGAG 1 cut(s) 561
BshFI GGCC 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 100
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 418, 535
BsmAI GTCTC 1 cut(s) 396
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 468, 525
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 430
BspPI GGATC 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 100
BssMI GATC 2 cut(s) 468, 525
Bst2UI CCWGG 2 cut(s) 446, 476
Bst6I CTCTTC 2 cut(s) 8, 224
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 2 cut(s) 471, 528
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 2 cut(s) 468, 525
BstNI CCWGG 2 cut(s) 446, 476
BstSCI CCNGG 2 cut(s) 444, 474
BsuRI GGCC 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 100
Csp6I GTAC 2 cut(s) 73, 565
CspAI ACCGGT 1 cut(s) 100
CviAII CATG 1 cut(s) 381
CviJI RGCY 7 cut(s) 115, 164, 207, 221, 237, 274, 461
CviKI_1 RGCY 7 cut(s) 115, 164, 207, 221, 237, 274, 461
CviQI GTAC 2 cut(s) 73, 565
DdeI CTNAG 1 cut(s) 417
DpnI GATC 2 cut(s) 470, 527
DpnII GATC 2 cut(s) 468, 525
Eam1104I CTCTTC 2 cut(s) 8, 224
EarI CTCTTC 2 cut(s) 8, 224
Eco57I CTGAAG 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 444, 474
FaeI CATG 1 cut(s) 384
FaiI YATR 5 cut(s) 167, 317, 382, 502, 524
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 1 cut(s) 380
FblI GTMKAC 1 cut(s) 441
FokI GGATG 1 cut(s) 275
FspBI CTAG 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 101
Hin1II CATG 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 4 cut(s) 50, 106, 449, 515
HpaII CCGG 1 cut(s) 101
HphI GGTGA 2 cut(s) 115, 444
Hpy166II GTNNAC 1 cut(s) 442
Hpy188III TCNNGA 3 cut(s) 142, 301, 557
Hpy8I GTNNAC 1 cut(s) 442
Hpy99I CGWCG 2 cut(s) 131, 134
HpyAV CCTTC 2 cut(s) 40, 97
HpyCH4IV ACGT 2 cut(s) 132, 352
HpyCH4V TGCA 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 2 cut(s) 132, 352
Hsp92II CATG 1 cut(s) 384
Kzo9I GATC 2 cut(s) 468, 525
LweI GCATC 3 cut(s) 181, 296, 344
MaeI CTAG 1 cut(s) 432
MaeII ACGT 2 cut(s) 132, 352
MalI GATC 2 cut(s) 470, 527
MboI GATC 2 cut(s) 468, 525
MboII GAAGA 4 cut(s) 22, 25, 173, 241
MluCI AATT 3 cut(s) 266, 435, 490
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 9 cut(s) 9, 27, 36, 154, 227, 277, 502, 537, 579
MseI TTAA 4 cut(s) 269, 465, 489, 577
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 446, 476
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 2 cut(s) 446, 476
NdeII GATC 2 cut(s) 468, 525
NlaIII CATG 1 cut(s) 384
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 4 cut(s) 50, 106, 449, 515
PflMI CCANNNNNTGG 1 cut(s) 535
PinAI ACCGGT 1 cut(s) 100
Psp6I CCWGG 2 cut(s) 444, 474
PspGI CCWGG 2 cut(s) 444, 474
RsaI GTAC 2 cut(s) 74, 566
RsaNI GTAC 2 cut(s) 73, 565
SaqAI TTAA 4 cut(s) 269, 465, 489, 577
Sau3AI GATC 2 cut(s) 468, 525
ScaI AGTACT 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 446, 476
SfaNI GCATC 3 cut(s) 181, 296, 344
Sse9I AATT 3 cut(s) 266, 435, 490
SsiI CCGC 1 cut(s) 196
SspI AATATT 1 cut(s) 244
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 444, 474
TaiI ACGT 2 cut(s) 135, 355
TaqI TCGA 1 cut(s) 38
TasI AATT 3 cut(s) 266, 435, 490
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 4 cut(s) 50, 106, 449, 515
Tru1I TTAA 4 cut(s) 269, 465, 489, 577
Tru9I TTAA 4 cut(s) 269, 465, 489, 577
TspDTI ATGAA 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 1 cut(s) 432
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.