Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009934

Physical Location & Seq

Genomic Coordinates Forward (+)

6506283 .. 6507410

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016418

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCACCTATACTTCCGACTTCCTTTGGGGGAATGTTCCTCACAGTCAGCATGATCGACACCTTGATATTACGGCAGAGAGTCTTATCTATGGCGGCGCACTTTTCAAATATTTCATCCGGATGGGGAGCAAAGCTCTTTCTAGATTTTTGTCCTACTCTCTCCTCTCCTTCCTCCTCCCTCCTCCACCGCTTCCCCAATCCTTGCCTTCTAAGAACCACCGAGTTCCATCCCCATCAAACCAAATCAAACCAGACCCTCAAAGCAGAAGTTAGAGAAGGGCGAGCTCTAAACATGTTGGGGAAGAAGAGGCGGTTGTTGTTTAGGAGGACGATGAGGAAGGAATCGTGGAGTGTTAGGTGGAAGTACTTGGGGTCTGCCTTCAAGTCTAGGACGGTGAATCTCCAGCTCTCTTTCTACGACAACGTTGTGTTCAAGATTGTTTCAGCTTTTGAGGCCATAGTGTTGGCGATGAGCATCGCTTTCTTCTACCTTTGTTGCGGTTGCAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.49

Weight (kDa)

10.3

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46295
fragaria_vesca	FvH4_3g05900
malus_domestica	MD05G1287000.v1.1
prunus_persica	Prupe.4G077900_v2.0.a1
pyrus_communis	pycom05g26540 pycom10g22050
rosa_chinensis	RchiOBHm_Chr5g0013541 RchiOBHm_Chr7g0229651
rosa_laevigata	RLG00000016418 RLG00000032024
rosa_multiflora	Rmu_sc0001516.1_g000040 Rmu_sc0002270.1_g000024 Rmu_sc0005416.1_g000006
rosa_roxburghii	Rroxscaffold_1G00028650 Rroxscaffold_1G00063030
rosa_rugosa	Rorug01G0129800 Rorug05G0010500 Rorug07G0069200
rosa_samantha	Rh1BG383500 Rh1DG414500
rosa_wichuraiana	Rw5G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	119
AciI	CCGC	4 cut(s)	95, 190, 313, 501
AclI	AACGTT	1 cut(s)	426
AfaI	GTAC	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	108, 385, 436
AluBI	AGCT	5 cut(s)	136, 287, 409, 449, 510
AluI	AGCT	5 cut(s)	136, 287, 409, 449, 510
Alw21I	GWGCWC	1 cut(s)	289
AlwNI	CAGNNNCTG	1 cut(s)	513
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	3 cut(s)	117, 237, 243
BceAI	ACGGC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	143, 390
BisI	GCNGC	2 cut(s)	96, 508
BlsI	GCNGC	2 cut(s)	97, 509
BmcAI	AGTACT	1 cut(s)	368
BmsI	GCATC	1 cut(s)	486
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	476
BsaWI	WCCGGW	1 cut(s)	119
Bse8I	GATNNNNATC	1 cut(s)	476
BseAI	TCCGGA	1 cut(s)	119
BseGI	GGATG	3 cut(s)	116, 128, 229
BseJI	GATNNNNATC	1 cut(s)	476
BseRI	GAGGAG	3 cut(s)	154, 166, 173
BshFI	GGCC	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	120
BsnI	GGCC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp13I	TCCGGA	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	4 cut(s)	95, 190, 313, 501
BspANI	GGCC	1 cut(s)	458
BspEI	TCCGGA	1 cut(s)	119
BssMI	GATC	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	46, 397
Bst6I	CTCTTC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	3 cut(s)	116, 128, 229
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 507
BstNSI	RCATGY	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	458
BtgZI	GCGATG	2 cut(s)	463, 485
BtsCI	GGATG	3 cut(s)	116, 128, 229
Cac8I	GCNNGC	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	513
CfoI	GCGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	2 cut(s)	52, 295
CviJI	RGCY	6 cut(s)	136, 287, 409, 449, 458, 510
CviKI_1	RGCY	6 cut(s)	136, 287, 409, 449, 458, 510
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	2 cut(s)	55, 298
FaiI	YATR	5 cut(s)	11, 53, 92, 296, 461
FatI	CATG	2 cut(s)	51, 294
Fnu4HI	GCNGC	2 cut(s)	96, 508
FokI	GGATG	3 cut(s)	103, 135, 216
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	96, 508
FspBI	CTAG	2 cut(s)	143, 390
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	96, 508
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	1 cut(s)	120
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	55, 298
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	3 cut(s)	81, 344, 400
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	18, 515
Hpy188III	TCNNGA	3 cut(s)	120, 143, 436
HpyAV	CCTTC	5 cut(s)	180, 218, 272, 334, 391
HpyCH4III	ACNGT	2 cut(s)	46, 397
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 507
HpyF3I	CTNAG	1 cut(s)	212
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	55, 298
HspAI	GCGC	1 cut(s)	98
Kpn2I	TCCGGA	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	3 cut(s)	133, 266, 419
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	2 cut(s)	143, 390
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	3 cut(s)	316, 319, 478
MhlI	GDGCHC	1 cut(s)	289
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	41
MroI	TCCGGA	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	121
MspI	CCGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	455, 507
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	2 cut(s)	55, 298
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	298
PciI	ACATGT	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	344, 400
PkrI	GCNGC	2 cut(s)	97, 509
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PscI	ACATGT	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	289
Psp1406I	AACGTT	1 cut(s)	426
PstNI	CAGNNNCTG	1 cut(s)	513
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	289
SatI	GCNGC	2 cut(s)	96, 508
Sau3AI	GATC	1 cut(s)	54
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	121
SsiI	CCGC	4 cut(s)	95, 190, 313, 501
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	143, 390
SstI	GAGCTC	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	46, 397
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	57
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	344, 400
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	105
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	2 cut(s)	143, 390
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.