Rmu_sc0005416.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005416.1
OG0009934
Physical Location & Seq
Reverse (-)
21915 .. 23595
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005416.1_g000006.1.cds

Sequence Viewer

Length: 444 bp
atgctcagtcagcgtcagtcgtcggcgttagtcttcggttgttcggttgcgtcagcttcagtcgtcagcgtcagtcttcgtcatttttgtcctactatctcctctccttcctcctcgctcctccaccgcttccccaatccttgccttctacggaaccaccgagttccatccccatcaaaccagaccctcaaagcagaagttagagaagggcgagctctgaacatgttggggaagaagaggtggttcttgtttaggaggtcgatgaggaaggaatcatggagtgttaggtggaagtacttggggtctgccttcaagtttaggccggtgaatctccagctctctttctacgatgaagttgtgttcaagattgtttcagtctttgaggccataatgttggatctgagcatcgctttcttctacctttgttgcggttgcagcttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.82

Weight (kDa)

10.2

Isoelectric Point (pI)

63.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 127, 429
AclWI GGATC 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 2 cut(s) 313, 364
AluBI AGCT 4 cut(s) 56, 215, 337, 438
AluI AGCT 4 cut(s) 56, 215, 337, 438
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 1 cut(s) 405
AlwNI CAGNNNCTG 1 cut(s) 441
AoxI GGCC 2 cut(s) 320, 384
ApeKI GCWGC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 337
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 2 cut(s) 25, 68
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 2 cut(s) 175, 181
BisI GCNGC 1 cut(s) 436
BlsI GCNGC 1 cut(s) 437
BmcAI AGTACT 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 155
BmsI GCATC 1 cut(s) 414
BpiI GAAGAC 2 cut(s) 25, 68
BpmI CTGGAG 1 cut(s) 317
Bse118I RCCGGY 1 cut(s) 322
BseGI GGATG 1 cut(s) 167
BseMII CTCAG 2 cut(s) 19, 392
BseRI GAGGAG 3 cut(s) 91, 103, 110
BshFI GGCC 2 cut(s) 322, 386
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 323
BsnI GGCC 2 cut(s) 322, 386
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 397
BspACI CCGC 2 cut(s) 127, 429
BspANI GGCC 2 cut(s) 322, 386
BspCNI CTCAG 2 cut(s) 18, 393
BspLI GGNNCC 1 cut(s) 155
BspPI GGATC 1 cut(s) 405
BsrFI RCCGGY 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 322
BssMI GATC 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 2 cut(s) 5, 401
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 1 cut(s) 400
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 2 cut(s) 10, 435
BstNSI RCATGY 1 cut(s) 226
BstV2I GAAGAC 2 cut(s) 25, 68
BstX2I RGATCY 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 394
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 2 cut(s) 322, 386
BtgZI GCGATG 1 cut(s) 391
BtsCI GGATG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 213
CaiI CAGNNNCTG 1 cut(s) 441
Cfr10I RCCGGY 1 cut(s) 322
CseI GACGC 3 cut(s) 2, 39, 58
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 223, 276
CviJI RGCY 6 cut(s) 56, 215, 322, 337, 386, 438
CviKI_1 RGCY 6 cut(s) 56, 215, 322, 337, 386, 438
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 5, 401
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 2 cut(s) 226, 279
FaiI YATR 3 cut(s) 224, 277, 389
FatI CATG 2 cut(s) 222, 275
Fnu4HI GCNGC 1 cut(s) 436
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 436
GluI GCNGC 1 cut(s) 436
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 2 cut(s) 322, 386
HapII CCGG 1 cut(s) 323
HgaI GACGC 3 cut(s) 2, 39, 58
Hin1II CATG 2 cut(s) 226, 279
HinfI GANTC 2 cut(s) 272, 328
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 337
Hpy188I TCNGA 3 cut(s) 219, 402, 443
Hpy188III TCNNGA 1 cut(s) 364
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 5 cut(s) 117, 155, 200, 262, 319
HpyCH4V TGCA 1 cut(s) 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 435
HpyF3I CTNAG 2 cut(s) 5, 401
Hsp92II CATG 2 cut(s) 226, 279
Kzo9I GATC 1 cut(s) 397
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 3 cut(s) 194, 336, 347
LweI GCATC 1 cut(s) 414
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 5 cut(s) 25, 68, 244, 247, 406
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 9 cut(s) 112, 121, 124, 131, 197, 231, 249, 258, 376
MspI CCGG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 10, 435
NdeII GATC 1 cut(s) 397
NlaIII CATG 2 cut(s) 226, 279
NlaIV GGNNCC 1 cut(s) 155
NspI RCATGY 1 cut(s) 226
PciI ACATGT 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PfeI GAWTC 2 cut(s) 272, 328
PkrI GCNGC 1 cut(s) 437
PscI ACATGT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 441
PsuI RGATCY 1 cut(s) 397
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SacI GAGCTC 1 cut(s) 217
SatI GCNGC 1 cut(s) 436
Sau3AI GATC 1 cut(s) 397
ScaI AGTACT 1 cut(s) 296
SduI GDGCHC 1 cut(s) 217
SetI ASST 8 cut(s) 58, 217, 242, 260, 290, 339, 423, 440
SfaNI GCATC 1 cut(s) 414
SsiI CCGC 2 cut(s) 127, 429
SstI GAGCTC 1 cut(s) 217
TaqI TCGA 1 cut(s) 260
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 2 cut(s) 272, 328
TseI GCWGC 1 cut(s) 435
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 1 cut(s) 166
XceI RCATGY 1 cut(s) 226
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.