Rorug01G0129800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009934
Physical Location & Seq
Reverse (-)
22061664 .. 22063004
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0129800.1

Sequence Viewer

Length: 1011 bp
ATGGAGGGTGGTGGTATGCTTCTTCCAGGCCAACGGTTTTGCCCCATGGAAGATGAGCTACTCATGTTCTACCTTAAGCCTAAGGTGAACGGGATGCAAGTGCCCGGCAACGAAGACGTCATCTGCGAGATGGATCTTTACGGTAACCAAGATCCTTGGAAAATATGGGAAAGATTCGAAGCAAGAAGATCCAACGACTTGAGGAGGAACAAAGATCTCTACTTCTTCACCCAAAAGAAGAAGAAGACTGCAAGAAGCTCACGTGCAAGCAGAACAGTTGGGAGTGGCGGTACTTGGAGAGGCCTAAACGCAGCAAAGGAGATATATCTTCTTGATCAGAATCAGCAGCCAACATCTACTCTTCTTGGTTTCAAGAAAACCTACACCTACAAGAACAAGGGCTCTGTGCATCATGGTTGCTGGATCATGTATGAGTTTGAACTTGATAAGTCACAACTCCTGCACAAGAAACAAGTAGACAAGAATGAATACGTTCTTTGTTTACTTAGGAAGAATGATGCACTACCGGAAAAGAAGAGAAAAAGGCAAGAAAAAGAGGAGATGCTTGAAGATTATGTCGTGGACGACGATGGAGATAACATCGATCCTGAATGGGGTATTGAGGAGCCGAGAGAGAGACGACAACGTCTTCTACCATACACTGATCAAGAAGAGAATATGGGACTCCAACAATTCGAGGCTGATCAAGGAGAATCGCCCTTGGAGTTGGCTGAATTAGAAAAGTGGTTTGATGCAGAATTTTATGCTGAAAATGTTGCCTCGCTAGTTGATGACAATTCAGGACTGCAACAATTGGAATCTGAATCTCAACTAGGAGAAGAAAATCTGGAGCAGCAAATGGGAGCTGAAGCCAATATGGATGGAGAGAACTTGAGTGACGCTATGCTTGGTGAAAACTGGCCTATGTCTTTTTTGGAAGATCTAATGATTGATGAGCAGCCAAATACCATGGAAGTAGGAGAGTGGAATGCCTGCTTATTCAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

39.2

Weight (kDa)

4.61

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 148 1.1e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 645
AatII GACGTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 477
AciI CCGC 1 cut(s) 288
AclWI GGATC 5 cut(s) 141, 146, 183, 431, 599
AcsI RAATTY 1 cut(s) 758
AcuI CTGAAG 1 cut(s) 888
AcvI CACGTG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 614
AflII CTTAAG 1 cut(s) 74
AgsI TTSAA 3 cut(s) 373, 440, 569
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 3 cut(s) 58, 258, 866
AluI AGCT 3 cut(s) 58, 258, 866
Alw26I GTCTC 1 cut(s) 631
AlwI GGATC 5 cut(s) 141, 146, 183, 431, 599
AoxI GGCC 3 cut(s) 28, 301, 920
ApeKI GCWGC 4 cut(s) 311, 346, 853, 958
ApoI RAATTY 1 cut(s) 758
Asp700I GAANNNNTTC 1 cut(s) 492
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 3 cut(s) 97, 220, 923
AsuII TTCGAA 1 cut(s) 177
AxyI CCTNAGG 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 105
BanII GRGCYC 1 cut(s) 404
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BbrPI CACGTG 1 cut(s) 263
BbsI GAAGAC 3 cut(s) 120, 251, 641
BbvI GCAGC 4 cut(s) 323, 358, 865, 970
BccI CCATC 3 cut(s) 124, 584, 875
BciT130I CCWGG 1 cut(s) 27
BclI TGATCA 3 cut(s) 334, 664, 703
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 631
BfaI CTAG 2 cut(s) 785, 833
BfrI CTTAAG 1 cut(s) 74
BglII AGATCT 2 cut(s) 214, 940
BisI GCNGC 4 cut(s) 312, 347, 854, 959
BlsI GCNGC 4 cut(s) 313, 348, 855, 960
Bme1390I CCNGG 2 cut(s) 27, 105
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 2 cut(s) 27, 105
BmsI GCATC 5 cut(s) 84, 418, 508, 552, 742
BpiI GAAGAC 3 cut(s) 120, 251, 641
BpmI CTGGAG 1 cut(s) 869
Bpu14I TTCGAA 1 cut(s) 177
BpuEI CTTGAG 2 cut(s) 220, 913
BpuMI CCSGG 1 cut(s) 105
Bsa29I ATCGAT 1 cut(s) 603
BsaAI YACGTR 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 4 cut(s) 45, 155, 720, 969
BsaWI WCCGGW 1 cut(s) 526
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse1I ACTGG 1 cut(s) 923
Bse21I CCTNAGG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 1 cut(s) 27
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 4 cut(s) 45, 155, 720, 969
BseGI GGATG 2 cut(s) 99, 886
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 614
BseNI ACTGG 1 cut(s) 923
BseRI GAGGAG 3 cut(s) 217, 572, 638
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 4 cut(s) 323, 358, 865, 970
BsgI GTGCAG 1 cut(s) 446
BshFI GGCC 3 cut(s) 30, 303, 922
BshVI ATCGAT 1 cut(s) 603
BsiSI CCGG 2 cut(s) 105, 527
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 1 cut(s) 631
BsmBI CGTCTC 1 cut(s) 631
BsmFI GGGAC 1 cut(s) 696
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 3 cut(s) 30, 303, 922
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 105, 404
Bsp19I CCATGG 2 cut(s) 45, 969
BspACI CCGC 1 cut(s) 288
BspANI GGCC 3 cut(s) 30, 303, 922
BspDI ATCGAT 1 cut(s) 603
BspLI GGNNCC 1 cut(s) 627
BspPI GGATC 5 cut(s) 141, 146, 183, 431, 599
BspT104I TTCGAA 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 74
BsrI ACTGG 1 cut(s) 923
BssECI CCNNGG 4 cut(s) 45, 155, 720, 969
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 4 cut(s) 45, 155, 720, 969
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 3 cut(s) 36, 143, 277
Bst6I CTCTTC 3 cut(s) 366, 530, 666
BstACI GRCGYC 1 cut(s) 117
BstAFI CTTAAG 1 cut(s) 74
BstBAI YACGTR 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 268, 994
BstDEI CTNAG 2 cut(s) 81, 506
BstDSI CCRYGG 2 cut(s) 45, 969
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 99, 886
BstMAI GTCTC 1 cut(s) 631
BstNI CCWGG 1 cut(s) 27
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 25, 103
BstSLI GKGCMC 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 323, 358, 865, 970
BstV2I GAAGAC 3 cut(s) 120, 251, 641
BstX2I RGATCY 5 cut(s) 133, 151, 188, 214, 940
BstYI RGATCY 5 cut(s) 133, 151, 188, 214, 940
Bsu15I ATCGAT 1 cut(s) 603
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 3 cut(s) 30, 303, 922
BsuTUI ATCGAT 1 cut(s) 603
BtgI CCRYGG 2 cut(s) 45, 969
BtsCI GGATG 2 cut(s) 99, 886
BtsIMutI CAGTG 1 cut(s) 660
Cac8I GCNNGC 2 cut(s) 268, 994
ClaI ATCGAT 1 cut(s) 603
CseI GACGC 1 cut(s) 908
Csp6I GTAC 1 cut(s) 291
CviAII CATG 5 cut(s) 46, 64, 413, 427, 970
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 2 cut(s) 81, 506
DrdI GACNNNNNNGTC 1 cut(s) 645
DseDI GACNNNNNNGTC 1 cut(s) 645
Eam1104I CTCTTC 3 cut(s) 366, 530, 666
EarI CTCTTC 3 cut(s) 366, 530, 666
Eco130I CCWWGG 4 cut(s) 45, 155, 720, 969
Eco147I AGGCCT 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 888
Eco72I CACGTG 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 81
Eco91I GGTNACC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 4 cut(s) 45, 155, 720, 969
EcoT38I GRGCYC 1 cut(s) 404
ErhI CCWWGG 4 cut(s) 45, 155, 720, 969
Esp3I CGTCTC 1 cut(s) 631
FaeI CATG 5 cut(s) 49, 67, 416, 430, 973
FaqI GGGAC 1 cut(s) 696
FatI CATG 5 cut(s) 45, 63, 412, 426, 969
FbaI TGATCA 3 cut(s) 334, 664, 703
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 4 cut(s) 312, 347, 854, 959
FokI GGATG 2 cut(s) 106, 893
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 4 cut(s) 312, 347, 854, 959
FspBI CTAG 2 cut(s) 785, 833
GluI GCNGC 4 cut(s) 312, 347, 854, 959
GsuI CTGGAG 1 cut(s) 869
HaeIII GGCC 3 cut(s) 30, 303, 922
HapII CCGG 2 cut(s) 105, 527
HgaI GACGC 1 cut(s) 908
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 5 cut(s) 49, 67, 416, 430, 973
HinfI GANTC 6 cut(s) 174, 340, 684, 713, 818, 824
HpaII CCGG 2 cut(s) 105, 527
HphI GGTGA 3 cut(s) 97, 220, 923
Hpy166II GTNNAC 4 cut(s) 88, 478, 503, 583
Hpy188I TCNGA 3 cut(s) 339, 823, 1004
Hpy188III TCNNGA 6 cut(s) 332, 373, 608, 668, 801, 848
Hpy8I GTNNAC 4 cut(s) 88, 478, 503, 583
Hpy99I CGWCG 1 cut(s) 590
HpyCH4III ACNGT 3 cut(s) 36, 143, 277
HpyCH4IV ACGT 4 cut(s) 117, 262, 492, 646
HpyCH4V TGCA 8 cut(s) 97, 251, 266, 409, 463, 521, 755, 808
HpyF3I CTNAG 2 cut(s) 81, 506
HpySE526I ACGT 4 cut(s) 117, 262, 492, 646
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 5 cut(s) 49, 67, 416, 430, 973
Ksp22I TGATCA 3 cut(s) 334, 664, 703
LmnI GCTCC 3 cut(s) 625, 850, 863
Lsp1109I GCAGC 4 cut(s) 323, 358, 865, 970
LweI GCATC 5 cut(s) 84, 418, 508, 552, 742
MaeI CTAG 2 cut(s) 785, 833
MaeII ACGT 4 cut(s) 117, 262, 492, 646
MaeIII GTNAC 3 cut(s) 143, 450, 896
MfeI CAATTG 1 cut(s) 812
MflI RGATCY 5 cut(s) 133, 151, 188, 214, 940
MhlI GDGCHC 2 cut(s) 105, 404
MluCI AATT 5 cut(s) 692, 734, 758, 796, 812
MlyI GAGTC 1 cut(s) 678
MmeI TCCRAC 2 cut(s) 216, 712
MnlI CCTC 7 cut(s) 195, 198, 293, 550, 616, 691, 790
MroXI GAANNNNTTC 1 cut(s) 492
MseI TTAA 1 cut(s) 75
MspCI CTTAAG 1 cut(s) 74
MspI CCGG 2 cut(s) 105, 527
MspR9I CCNGG 2 cut(s) 27, 105
MunI CAATTG 1 cut(s) 812
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 1 cut(s) 27
NciI CCSGG 1 cut(s) 105
NcoI CCATGG 2 cut(s) 45, 969
NlaIII CATG 5 cut(s) 49, 67, 416, 430, 973
NlaIV GGNNCC 1 cut(s) 627
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 2 cut(s) 450, 896
NspV TTCGAA 1 cut(s) 177
PceI AGGCCT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 585
PctI GAATGC 1 cut(s) 994
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 5 cut(s) 174, 340, 713, 818, 824
PflFI GACNNNGTC 1 cut(s) 645
PkrI GCNGC 4 cut(s) 313, 348, 855, 960
PleI GAGTC 1 cut(s) 678
PmaCI CACGTG 1 cut(s) 263
PmlI CACGTG 1 cut(s) 263
PpsI GAGTC 1 cut(s) 678
Ppu21I YACGTR 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 25
PspCI CACGTG 1 cut(s) 263
PspEI GGTNACC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 627
PsuI RGATCY 5 cut(s) 133, 151, 188, 214, 940
PsyI GACNNNGTC 1 cut(s) 645
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 4 cut(s) 312, 347, 854, 959
SchI GAGTC 1 cut(s) 678
ScrFI CCNGG 2 cut(s) 27, 105
SduI GDGCHC 2 cut(s) 105, 404
SfaNI GCATC 5 cut(s) 84, 418, 508, 552, 742
SfuI TTCGAA 1 cut(s) 177
SmlI CTYRAG 3 cut(s) 74, 199, 892
SmoI CTYRAG 3 cut(s) 74, 199, 892
Sse9I AATT 5 cut(s) 692, 734, 758, 796, 812
SseBI AGGCCT 1 cut(s) 303
SsiI CCGC 1 cut(s) 288
SspMI CTAG 2 cut(s) 785, 833
StuI AGGCCT 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 25, 103
StyI CCWWGG 4 cut(s) 45, 155, 720, 969
TaaI ACNGT 3 cut(s) 36, 143, 277
TaiI ACGT 4 cut(s) 120, 265, 495, 649
TaqI TCGA 3 cut(s) 177, 603, 696
TasI AATT 5 cut(s) 692, 734, 758, 796, 812
TfiI GAWTC 5 cut(s) 174, 340, 713, 818, 824
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 1 cut(s) 667
TseFI GTSAC 2 cut(s) 450, 896
TseI GCWGC 4 cut(s) 311, 346, 853, 958
Tsp45I GTSAC 2 cut(s) 450, 896
TspDTI ATGAA 1 cut(s) 501
TspRI CASTG 1 cut(s) 667
Tth111I GACNNNGTC 1 cut(s) 645
Vha464I CTTAAG 1 cut(s) 74
XapI RAATTY 1 cut(s) 758
XmiI GTMKAC 1 cut(s) 477
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 2 cut(s) 785, 833
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.