Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009934

Physical Location & Seq

Genomic Coordinates Reverse (-)

36571318 .. 36572904

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAAACCGAGATCCCAGTCATCCCACCAATGCCTAACAAATCTAGAAAGCAATACACCGATGTCAAAGGAGGCCTGGAAACCACCGAGTTCCATCCCCATCAAACCAAAGCAAACCAGACCCTCAAAGGAGAAGTTAGAGAAGGGCGAGCTCTGAACATGTTGGGGAAGAAGAGATGGTTGTTGTTTTGGAGGTCGATGAGGAAGGAATCGTGGAGTGTTAGGTGGAAGTACTTGGGGTCTGCCTTCAAGTTTAGGCCCGTGAATATCCAGCTCTCTTTCTACGACAACGTTTTGTTCAAGATTGTTTCAGTTTTTGAGGCCATAGTGTTAGCGCTGAGCATTGCTTTCTTCTACCTTTGTTGCGGTTGCAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.73

Weight (kDa)

9.92

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46295
fragaria_vesca	FvH4_3g05900
malus_domestica	MD05G1287000.v1.1
prunus_persica	Prupe.4G077900_v2.0.a1
pyrus_communis	pycom05g26540 pycom10g22050
rosa_chinensis	RchiOBHm_Chr5g0013541 RchiOBHm_Chr7g0229651
rosa_laevigata	RLG00000016418 RLG00000032024
rosa_multiflora	Rmu_sc0001516.1_g000040 Rmu_sc0002270.1_g000024 Rmu_sc0005416.1_g000006
rosa_roxburghii	Rroxscaffold_1G00028650 Rroxscaffold_1G00063030
rosa_rugosa	Rorug01G0129800 Rorug05G0010500 Rorug07G0069200
rosa_samantha	Rh1BG383500 Rh1DG414500
rosa_wichuraiana	Rw5G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	366
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	1 cut(s)	7
AfaI	GTAC	1 cut(s)	233
AfeI	AGCGCT	1 cut(s)	336
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	250, 301
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	3 cut(s)	152, 274, 375
AluI	AGCT	3 cut(s)	152, 274, 375
Alw21I	GWGCWC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	7
AlwNI	CAGNNNCTG	1 cut(s)	378
Aor51HI	AGCGCT	1 cut(s)	336
AoxI	GGCC	3 cut(s)	73, 257, 321
ApeKI	GCWGC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	154
BccI	CCATC	3 cut(s)	102, 108, 171
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	338
BisI	GCNGC	1 cut(s)	373
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	374
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	11
BmuI	ACTGGG	1 cut(s)	11
Bpu1102I	GCTNAGC	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	21, 94
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	75, 259, 323
BsiHKAI	GWGCWC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	75, 259, 323
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	12
Bsp1720I	GCTNAGC	1 cut(s)	338
BspACI	CCGC	1 cut(s)	366
BspANI	GGCC	3 cut(s)	75, 259, 323
BspCNI	CTCAG	1 cut(s)	330
BspPI	GGATC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	21, 94
BstH2I	RGCGCY	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	75, 259, 323
BtsCI	GGATG	2 cut(s)	21, 94
Cac8I	GCNNGC	1 cut(s)	150
CaiI	CAGNNNCTG	1 cut(s)	378
CfoI	GCGC	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	6 cut(s)	75, 152, 259, 274, 323, 375
CviKI_1	RGCY	6 cut(s)	75, 152, 259, 274, 323, 375
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	154
Eco47III	AGCGCT	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	1 cut(s)	163
FaiI	YATR	2 cut(s)	161, 326
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	373
FokI	GGATG	2 cut(s)	8, 81
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	373
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	373
HaeII	RGCGCY	1 cut(s)	338
HaeIII	GGCC	3 cut(s)	75, 259, 323
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	1 cut(s)	209
Hpy188I	TCNGA	2 cut(s)	156, 380
Hpy188III	TCNNGA	2 cut(s)	45, 301
HpyAV	CCTTC	3 cut(s)	137, 199, 256
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	5 cut(s)	30, 62, 89, 131, 284
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	291
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	3 cut(s)	181, 184, 343
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	65, 134, 186, 195, 313
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	372
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	1 cut(s)	163
NspI	RCATGY	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	75
PciI	ACATGT	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	374
PscI	ACATGT	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	154
Psp1406I	AACGTT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	378
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	154
SatI	GCNGC	1 cut(s)	373
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	1 cut(s)	258
ScaI	AGTACT	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	7 cut(s)	154, 197, 227, 276, 294, 360, 377
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	366
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	154
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	1 cut(s)	197
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	209
TseI	GCWGC	1 cut(s)	372
TspDTI	ATGAA	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	44
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.