FvH4_3g06000

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009324
Physical Location & Seq
Reverse (-)
3487802 .. 3491047
3246 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06000.t1

Sequence Viewer

Length: 735 bp
ATGCAGAGTGACCAAGCATTTGACCCAAACAAGGCAGCACCGCCCTTTGCAAATCAACTGGGTAATAACTACATGCATATGCCAGTGGCATCTCCTTTTGGTACTGTTTTAACTCAGGATTCAGTGCACTACAAACCCTTCCATGGTGTTGAATTTCAAACCTCTGACATTTGCCCGAAGAATTTCATAATTTTCGACCAGACTGATCATCGTAGTCAGATTATGTTCAATCCTGCAATTGCCCACAAAATTTCTGGTCCTGCCTTTGACTTCTGTGCAGCTTACATGCAAGACAATTTGGGATTCAATGAGGGAAATAATGAGAATAAAGAAACATCTTCATCTCTGAAGGAGGATTCAGATGATATTGATGCACTGTTAAGCTTGGAAGAGGAAGAAGAGCAAGAAGAATATGACGAGGAAGAGGTCAGTACAGCACGAACTCATGGAAACTATGGGAGTTCATACTCTGATTCTTGCTCCAGTTATGGTCTGAAAACCAGGAAGGATGAGTCGAATTTTTCACTCGAAGAATCTTCTGGCATTGGTAGCAGCAGCAGCTGCAACAGTGAAAGAAAACGAAAGAAAATGAAGAAGATGGTGAGAGCACTGAGAGGGATTGTACCTGGTGGGAATGAAATGAACACAGTTGCTGTTATAGATGGAGCTGTTCAGTACTTGAAGTCTCTCAAAGTCGAGATGCAGAAGCTCGGTGTCAGGAATCTAAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.14

Weight (kDa)

4.9

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 189 - 244 8.4e-17 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AcsI RAATTY 4 cut(s) 152, 181, 249, 517
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 4 cut(s) 103, 433, 624, 677
AfiI CCNNNNNNNGG 2 cut(s) 31, 143
AgsI TTSAA 5 cut(s) 152, 158, 229, 307, 682
AjnI CCWGG 2 cut(s) 500, 625
AluBI AGCT 5 cut(s) 281, 384, 561, 668, 709
AluI AGCT 5 cut(s) 281, 384, 561, 668, 709
Alw21I GWGCWC 2 cut(s) 129, 610
Alw26I GTCTC 1 cut(s) 690
Alw44I GTGCAC 1 cut(s) 125
AlwNI CAGNNNCTG 2 cut(s) 561, 653
ApaLI GTGCAC 1 cut(s) 125
ApeKI GCWGC 6 cut(s) 35, 278, 552, 555, 558, 561
ApoI RAATTY 4 cut(s) 152, 181, 249, 517
ArsI GACNNNNNNTTYG 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 613
AvaII GGWCC 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 129, 610
BbvI GCAGC 6 cut(s) 47, 290, 548, 564, 567, 570
BccI CCATC 2 cut(s) 592, 656
BciT130I CCWGG 2 cut(s) 502, 627
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 690
BisI GCNGC 6 cut(s) 36, 279, 553, 556, 559, 562
BlsI GCNGC 6 cut(s) 37, 280, 554, 557, 560, 563
BmcAI AGTACT 1 cut(s) 677
Bme1390I CCNGG 2 cut(s) 502, 627
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmrFI CCNGG 2 cut(s) 502, 627
BmrI ACTGGG 1 cut(s) 68
BmsI GCATC 3 cut(s) 98, 361, 690
BmuI ACTGGG 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 143
Bse1I ACTGG 3 cut(s) 63, 83, 483
BseBI CCWGG 2 cut(s) 502, 627
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 2 cut(s) 31, 143
BseMII CTCAG 2 cut(s) 128, 602
BseNI ACTGG 3 cut(s) 63, 83, 483
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 6 cut(s) 47, 290, 548, 564, 567, 570
BsgI GTGCAG 1 cut(s) 297
BsiHKAI GWGCWC 2 cut(s) 129, 610
BslI CCNNNNNNNGG 2 cut(s) 31, 143
BsmAI GTCTC 1 cut(s) 690
Bsp1286I GDGCHC 2 cut(s) 129, 610
Bsp143I GATC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 142
BspACI CCGC 1 cut(s) 41
BspCNI CTCAG 2 cut(s) 127, 603
BspQI GCTCTTC 1 cut(s) 393
BsrI ACTGG 3 cut(s) 63, 83, 483
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 502, 627
Bst4CI ACNGT 4 cut(s) 106, 378, 569, 649
Bst6I CTCTTC 3 cut(s) 384, 393, 417
BstAPI GCANNNNNTGC 1 cut(s) 561
BstDEI CTNAG 2 cut(s) 114, 611
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 514
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 3 cut(s) 549, 558, 561
BstNI CCWGG 2 cut(s) 502, 627
BstNSI RCATGY 2 cut(s) 76, 289
BstSCI CCNGG 2 cut(s) 500, 625
BstSLI GKGCMC 1 cut(s) 129
BstV1I GCAGC 6 cut(s) 47, 290, 548, 564, 567, 570
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 514
BtsIMutI CAGTG 5 cut(s) 90, 129, 374, 574, 608
CaiI CAGNNNCTG 2 cut(s) 561, 653
Cfr13I GGNCC 1 cut(s) 257
CsiI ACCWGGT 1 cut(s) 625
Csp6I GTAC 4 cut(s) 102, 432, 623, 676
CviAII CATG 4 cut(s) 73, 143, 286, 446
CviJI RGCY 5 cut(s) 281, 384, 561, 668, 709
CviKI_1 RGCY 5 cut(s) 281, 384, 561, 668, 709
CviQI GTAC 4 cut(s) 102, 432, 623, 676
DdeI CTNAG 2 cut(s) 114, 611
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 3 cut(s) 384, 393, 417
EarI CTCTTC 3 cut(s) 384, 393, 417
Eco130I CCWWGG 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 500, 625
EcoT14I CCWWGG 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 4 cut(s) 76, 146, 289, 449
FatI CATG 4 cut(s) 72, 142, 285, 445
FauNDI CATATG 1 cut(s) 78
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 6 cut(s) 36, 279, 553, 556, 559, 562
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 6 cut(s) 36, 279, 553, 556, 559, 562
GluI GCNGC 6 cut(s) 36, 279, 553, 556, 559, 562
GsuI CTGGAG 1 cut(s) 466
Hin1II CATG 4 cut(s) 76, 146, 289, 449
HindIII AAGCTT 1 cut(s) 382
HinfI GANTC 7 cut(s) 119, 303, 356, 473, 512, 533, 721
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 6 cut(s) 166, 219, 348, 361, 472, 495
Hpy188III TCNNGA 3 cut(s) 116, 697, 718
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 148, 343, 499
HpyCH4III ACNGT 4 cut(s) 106, 378, 569, 649
HpyF10VI GCNNNNNNNGC 3 cut(s) 549, 558, 561
HpyF3I CTNAG 2 cut(s) 114, 611
Hsp92II CATG 4 cut(s) 76, 146, 289, 449
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 1 cut(s) 205
LguI GCTCTTC 1 cut(s) 393
LmnI GCTCC 2 cut(s) 485, 665
Lsp1109I GCAGC 6 cut(s) 47, 290, 548, 564, 567, 570
LweI GCATC 3 cut(s) 98, 361, 690
MabI ACCWGGT 1 cut(s) 625
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 2 cut(s) 129, 610
MluCI AATT 7 cut(s) 152, 181, 189, 237, 249, 295, 517
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 7 cut(s) 172, 304, 346, 385, 412, 418, 608
Mph1103I ATGCAT 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 2 cut(s) 110, 380
MslI CAYNNNNRTG 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 561
MspR9I CCNGG 2 cut(s) 502, 627
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 2 cut(s) 502, 627
MwoI GCNNNNNNNGC 3 cut(s) 549, 558, 561
NcoI CCATGG 1 cut(s) 142
NdeI CATATG 1 cut(s) 78
NdeII GATC 1 cut(s) 205
NlaIII CATG 4 cut(s) 76, 146, 289, 449
NmuCI GTSAC 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 78
NspI RCATGY 2 cut(s) 76, 289
PciSI GCTCTTC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 6 cut(s) 119, 303, 356, 473, 533, 721
PkrI GCNGC 6 cut(s) 37, 280, 554, 557, 560, 563
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp6I CCWGG 2 cut(s) 500, 625
PspGI CCWGG 2 cut(s) 500, 625
PspPI GGNCC 1 cut(s) 257
PstNI CAGNNNCTG 2 cut(s) 561, 653
PvuII CAGCTG 1 cut(s) 561
RsaI GTAC 4 cut(s) 103, 433, 624, 677
RsaNI GTAC 4 cut(s) 102, 432, 623, 676
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 393
SaqAI TTAA 2 cut(s) 110, 380
SatI GCNGC 6 cut(s) 36, 279, 553, 556, 559, 562
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 257
ScaI AGTACT 1 cut(s) 677
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 2 cut(s) 502, 627
SduI GDGCHC 2 cut(s) 129, 610
SetI ASST 8 cut(s) 164, 283, 386, 429, 563, 628, 670, 711
SexAI ACCWGGT 1 cut(s) 625
SfaNI GCATC 3 cut(s) 98, 361, 690
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 77
Sse9I AATT 7 cut(s) 152, 181, 189, 237, 249, 295, 517
SsiI CCGC 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 500, 625
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 4 cut(s) 106, 378, 569, 649
TaqI TCGA 4 cut(s) 195, 515, 528, 696
TasI AATT 7 cut(s) 152, 181, 189, 237, 249, 295, 517
TatI WGTACW 2 cut(s) 431, 675
TfiI GAWTC 6 cut(s) 119, 303, 356, 473, 533, 721
Tru1I TTAA 2 cut(s) 110, 380
Tru9I TTAA 2 cut(s) 110, 380
TscAI CASTG 5 cut(s) 90, 129, 381, 574, 615
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 6 cut(s) 35, 278, 552, 555, 558, 561
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 6 cut(s) 175, 330, 453, 605, 651, 656
TspRI CASTG 5 cut(s) 90, 129, 381, 574, 615
VneI GTGCAC 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 4 cut(s) 152, 181, 249, 517
XceI RCATGY 2 cut(s) 76, 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 677
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.