RLG00000032017

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009324
Physical Location & Seq
Forward (+)
10256906 .. 10258739
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032017

Sequence Viewer

Length: 906 bp
ATGTATGTTGGGGTAACCATAAGGAGATACAGAGCTATTCAGGACGTTGGGAAATTTATGATGTATGTTGGGATCATTGCCTACTACCAACTGATGCAAGTTTGCCAGGCTGAATATTTTCGTCAGTTGCTTAAACCTGTTACCTTTAATTACTTAGGATTTCTGATGCAGAGTGACCAAGCATTTGACCCAAACAAGGCAGCACGGCCCTTTGCAAATCAAGTGGGTAATAACTACATGCATATGCCTGTGGCATCTCCTTTTGGTACTGTTTTACCTCATGATGCAATGCACTACAAACCCTTCCATGGTGTTGAATTTCAAACCTCTGACATTTGCCCAAAGAATTTCATAATCTTCGACCAGACTGATCATCGCAGTCAGATTATGTTCAATCCTGCAATTGCCCACAAAATTTCTGGTCCTGCCTTTGACATCTGTGCAGCTTACATGCAAGACAATTTGGGATTGATTGAGGGAAATAATGAGAATAGAGAAACATCTTCATCTCTGAAGGAGGATTCAGATGATATTGATGCATTGTTGAGCTTGGAAGATGAAGAAGAACAAGAAGAATATGATGAGGAAGAGGTCAGTACAGCACGAACTCATGGAAACTATGGGAGTTCATATGCTGATTCTTGCTCCAGTTATGGTTTGAAAACCAGGAATGACGGGCAGAATTTTTCACTTGAAAAAACTTCTGGCATTGGTTGCAGCAGCAGCAGCAGCTGCAACAGTGAAAGAAAACGAAAGAAAATGAAGAAGATGGTGAGAGCACTAAGAGGGATTGTGCCTGGTGGGAATGAAATGAACACGGTCGCTGTGATAGATGAAGCTGTTCAGTACTTGAAGTCTCTCAAAGTCGAGATGCAGAAGCTTGGAGTTGGGAATTTGAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

33.86

Weight (kDa)

5.44

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 246 - 301 1.7e-18 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 6 cut(s) 53, 317, 346, 414, 682, 892
AcuI CTGAAG 1 cut(s) 533
AfaI GTAC 3 cut(s) 268, 598, 848
AfiI CCNNNNNNNGG 2 cut(s) 196, 308
AgsI TTSAA 7 cut(s) 317, 323, 394, 661, 695, 853, 898
AjnI CCWGG 3 cut(s) 105, 665, 796
AluBI AGCT 6 cut(s) 35, 446, 549, 732, 839, 880
AluI AGCT 6 cut(s) 35, 446, 549, 732, 839, 880
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 1 cut(s) 861
AlwI GGATC 1 cut(s) 80
AlwNI CAGNNNCTG 1 cut(s) 732
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 8 cut(s) 200, 443, 717, 720, 723, 726, 729, 732
ApoI RAATTY 6 cut(s) 53, 317, 346, 414, 682, 892
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
Asp700I GAANNNNTTC 2 cut(s) 117, 840
AspS9I GGNCC 2 cut(s) 207, 422
AsuHPI GGTGA 1 cut(s) 784
AvaII GGWCC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 781
BbvI GCAGC 8 cut(s) 212, 455, 719, 729, 732, 735, 738, 741
BccI CCATC 1 cut(s) 763
BceAI ACGGC 1 cut(s) 221
BciT130I CCWGG 3 cut(s) 107, 667, 798
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 861
BisI GCNGC 8 cut(s) 201, 444, 718, 721, 724, 727, 730, 733
BlsI GCNGC 8 cut(s) 202, 445, 719, 722, 725, 728, 731, 734
BmcAI AGTACT 1 cut(s) 848
Bme1390I CCNGG 3 cut(s) 107, 667, 798
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 207, 422
BmrFI CCNGG 3 cut(s) 107, 667, 798
BmsI GCATC 6 cut(s) 84, 156, 263, 274, 526, 861
BpmI CTGGAG 1 cut(s) 631
BsaJI CCNNGG 1 cut(s) 307
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 308
Bse1I ACTGG 1 cut(s) 648
Bse3DI GCAATG 2 cut(s) 75, 294
BseBI CCWGG 3 cut(s) 107, 667, 798
BseDI CCNNGG 1 cut(s) 307
BseLI CCNNNNNNNGG 2 cut(s) 196, 308
BseMI GCAATG 2 cut(s) 75, 294
BseNI ACTGG 1 cut(s) 648
BseXI GCAGC 8 cut(s) 212, 455, 719, 729, 732, 735, 738, 741
BsgI GTGCAG 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 822
BshFI GGCC 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 822
BsiHKAI GWGCWC 1 cut(s) 781
BslI CCNNNNNNNGG 2 cut(s) 196, 308
BsmAI GTCTC 1 cut(s) 861
BsnI GGCC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 781
Bsp143I GATC 2 cut(s) 72, 370
Bsp19I CCATGG 1 cut(s) 307
BspANI GGCC 1 cut(s) 208
BspHI TCATGA 1 cut(s) 280
BspPI GGATC 1 cut(s) 80
BsrDI GCAATG 2 cut(s) 75, 294
BsrI ACTGG 1 cut(s) 648
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 2 cut(s) 72, 370
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 3 cut(s) 107, 667, 798
Bst4CI ACNGT 3 cut(s) 271, 740, 820
Bst6I CTCTTC 1 cut(s) 582
BstAPI GCANNNNNTGC 2 cut(s) 714, 732
BstDEI CTNAG 2 cut(s) 154, 782
BstDSI CCRYGG 1 cut(s) 307
BstEII GGTNACC 1 cut(s) 13
BstKTI GATC 2 cut(s) 75, 373
BstMAI GTCTC 1 cut(s) 861
BstMBI GATC 2 cut(s) 72, 370
BstMCI CGRYCG 1 cut(s) 822
BstMWI GCNNNNNNNGC 5 cut(s) 714, 723, 726, 729, 732
BstNI CCWGG 3 cut(s) 107, 667, 798
BstNSI RCATGY 2 cut(s) 241, 454
BstPI GGTNACC 1 cut(s) 13
BstSCI CCNGG 3 cut(s) 105, 665, 796
BstV1I GCAGC 8 cut(s) 212, 455, 719, 729, 732, 735, 738, 741
BsuRI GGCC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 307
BtgZI GCGATG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 745
CaiI CAGNNNCTG 1 cut(s) 732
CciI TCATGA 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 207, 422
Csp6I GTAC 3 cut(s) 267, 597, 847
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 5 cut(s) 238, 281, 308, 451, 611
CviJI RGCY 8 cut(s) 35, 110, 208, 446, 549, 732, 839, 880
CviKI_1 RGCY 8 cut(s) 35, 110, 208, 446, 549, 732, 839, 880
CviQI GTAC 3 cut(s) 267, 597, 847
DdeI CTNAG 2 cut(s) 154, 782
DpnI GATC 2 cut(s) 74, 372
DpnII GATC 2 cut(s) 72, 370
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 533
Eco91I GGTNACC 1 cut(s) 13
EcoO65I GGTNACC 1 cut(s) 13
EcoRII CCWGG 3 cut(s) 105, 665, 796
EcoT14I CCWWGG 1 cut(s) 307
EcoT22I ATGCAT 2 cut(s) 243, 541
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 5 cut(s) 241, 284, 311, 454, 614
FatI CATG 5 cut(s) 237, 280, 307, 450, 610
FauNDI CATATG 2 cut(s) 243, 631
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 8 cut(s) 201, 444, 718, 721, 724, 727, 730, 733
Fsp4HI GCNGC 8 cut(s) 201, 444, 718, 721, 724, 727, 730, 733
GluI GCNGC 8 cut(s) 201, 444, 718, 721, 724, 727, 730, 733
GsuI CTGGAG 1 cut(s) 631
HaeIII GGCC 1 cut(s) 208
Hin1II CATG 5 cut(s) 241, 284, 311, 454, 614
HindIII AAGCTT 1 cut(s) 878
HinfI GANTC 2 cut(s) 521, 638
HphI GGTGA 1 cut(s) 784
Hpy188I TCNGA 5 cut(s) 165, 331, 384, 513, 526
Hpy188III TCNNGA 3 cut(s) 41, 281, 868
HpyAV CCTTC 2 cut(s) 313, 508
HpyCH4III ACNGT 3 cut(s) 271, 740, 820
HpyCH4IV ACGT 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 5 cut(s) 714, 723, 726, 729, 732
HpyF3I CTNAG 2 cut(s) 154, 782
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 5 cut(s) 241, 284, 311, 454, 614
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 72, 370
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 8 cut(s) 212, 455, 719, 729, 732, 735, 738, 741
LweI GCATC 6 cut(s) 84, 156, 263, 274, 526, 861
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 13, 139, 173
MalI GATC 2 cut(s) 74, 372
MboI GATC 2 cut(s) 72, 370
MboII GAAGA 9 cut(s) 349, 495, 566, 572, 575, 584, 599, 775, 778
MfeI CAATTG 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 781
MluCI AATT 9 cut(s) 53, 148, 317, 346, 402, 414, 460, 682, 892
MnlI CCTC 7 cut(s) 288, 337, 469, 511, 577, 583, 779
Mph1103I ATGCAT 2 cut(s) 243, 541
MroXI GAANNNNTTC 2 cut(s) 117, 840
MseI TTAA 2 cut(s) 132, 147
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 732
MspR9I CCNGG 3 cut(s) 107, 667, 798
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 3 cut(s) 107, 667, 798
MwoI GCNNNNNNNGC 5 cut(s) 714, 723, 726, 729, 732
NcoI CCATGG 1 cut(s) 307
NdeI CATATG 2 cut(s) 243, 631
NdeII GATC 2 cut(s) 72, 370
NlaIII CATG 5 cut(s) 241, 284, 311, 454, 614
NmuCI GTSAC 1 cut(s) 173
NsiI ATGCAT 2 cut(s) 243, 541
NspI RCATGY 2 cut(s) 241, 454
PagI TCATGA 1 cut(s) 280
PdmI GAANNNNTTC 2 cut(s) 117, 840
PfeI GAWTC 2 cut(s) 521, 638
PkrI GCNGC 8 cut(s) 202, 445, 719, 722, 725, 728, 731, 734
Psp6I CCWGG 3 cut(s) 105, 665, 796
PspEI GGTNACC 1 cut(s) 13
PspGI CCWGG 3 cut(s) 105, 665, 796
PspPI GGNCC 2 cut(s) 207, 422
PstNI CAGNNNCTG 1 cut(s) 732
PvuII CAGCTG 1 cut(s) 732
RsaI GTAC 3 cut(s) 268, 598, 848
RsaNI GTAC 3 cut(s) 267, 597, 847
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 2 cut(s) 132, 147
SatI GCNGC 8 cut(s) 201, 444, 718, 721, 724, 727, 730, 733
Sau3AI GATC 2 cut(s) 72, 370
Sau96I GGNCC 2 cut(s) 207, 422
ScaI AGTACT 1 cut(s) 848
ScrFI CCNGG 3 cut(s) 107, 667, 798
SduI GDGCHC 1 cut(s) 781
SfaNI GCATC 6 cut(s) 84, 156, 263, 274, 526, 861
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 9 cut(s) 53, 148, 317, 346, 402, 414, 460, 682, 892
SspI AATATT 1 cut(s) 116
StyD4I CCNGG 3 cut(s) 105, 665, 796
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 3 cut(s) 271, 740, 820
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 360, 867
TasI AATT 9 cut(s) 53, 148, 317, 346, 402, 414, 460, 682, 892
TatI WGTACW 2 cut(s) 596, 846
TfiI GAWTC 2 cut(s) 521, 638
Tru1I TTAA 2 cut(s) 132, 147
Tru9I TTAA 2 cut(s) 132, 147
TscAI CASTG 1 cut(s) 745
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 8 cut(s) 200, 443, 717, 720, 723, 726, 729, 732
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 8 cut(s) 340, 495, 573, 618, 776, 822, 827, 849
TspRI CASTG 1 cut(s) 745
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 6 cut(s) 53, 317, 346, 414, 682, 892
XceI RCATGY 2 cut(s) 241, 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XmnI GAANNNNTTC 2 cut(s) 117, 840
ZrmI AGTACT 1 cut(s) 848
Zsp2I ATGCAT 2 cut(s) 243, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.