Rh5AG104500

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009324
Physical Location & Seq
Forward (+)
9615350 .. 9616087
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG104500.1

Sequence Viewer

Length: 738 bp
ATGCAGAGTGACCAAGCATTTGACCCAAACAAGGCAGCACGGCCCTTTGCAAATCAAGTGGGTAATAACTACATGCATATGCCTGTGGCATCTCCTTTTGGTACTGTTTTACCTCATGATGCAATGCACTACAAACCCTTCCATGGTGTTGAATTTCAAACCTCTGACATTTGCCCAAAGAATTTCATAATCTTCGACCAGACTGATCATCGCAGTCAGATTATGTTCAATCCTGCAATTGCCCACAAAATTTCTGGTCCTGCCTTTGACATCTGTGCAGCTTACGTGCAAGACAATTTGGGATTGATTGAGGGAAATAATGAGAATAGAGAAACATCTTCATCTCTGAAGGAGGATTCAGATGATATTGATGCATTGTTGAGCTTGGAAGATGAAGAAGAGCAAGAAGAATATGATGAGGAAGAGGTCAGTACAGCACGAACTCATGGAAACTATGGGAGTTCATACTCTGATTCTTGCTCCAGTTATGGTTTGAAAACCAGGAATGAAGGGCAGAATTTTTCACTTGAAAAAACTTCTGGCATTGGTAGCAGCAGCAGCAGCTGCAACAGTGAACGAAAACGAAAGAAAATGAAGAAGATGGTGAGAGCACTAAGAGGGATTGTACCTGGTGGGAATGAAATGAACACGGTTGCTGTTATAGATGAAGCTGTTCAGTACTTGAAGTCTCTCAAAGTCGAGATGCAGAAGCTTGGAGTTGGGAATTTGAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.16

Weight (kDa)

5.03

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 190 - 245 1.1e-18 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 5 cut(s) 152, 181, 249, 517, 724
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 4 cut(s) 103, 433, 627, 680
AfiI CCNNNNNNNGG 2 cut(s) 31, 143
AgsI TTSAA 7 cut(s) 152, 158, 229, 496, 530, 685, 730
AjnI CCWGG 2 cut(s) 500, 628
AluBI AGCT 5 cut(s) 281, 384, 564, 671, 712
AluI AGCT 5 cut(s) 281, 384, 564, 671, 712
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 1 cut(s) 693
AlwNI CAGNNNCTG 1 cut(s) 564
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 7 cut(s) 35, 278, 552, 555, 558, 561, 564
ApoI RAATTY 5 cut(s) 152, 181, 249, 517, 724
ArsI GACNNNNNNTTYG 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 672
AspS9I GGNCC 2 cut(s) 42, 257
AsuHPI GGTGA 1 cut(s) 616
AvaII GGWCC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 613
BbvI GCAGC 7 cut(s) 47, 290, 551, 564, 567, 570, 573
BccI CCATC 1 cut(s) 595
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 502, 630
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 693
BisI GCNGC 7 cut(s) 36, 279, 553, 556, 559, 562, 565
BlsI GCNGC 7 cut(s) 37, 280, 554, 557, 560, 563, 566
BmcAI AGTACT 1 cut(s) 680
Bme1390I CCNGG 2 cut(s) 502, 630
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 42, 257
BmrFI CCNGG 2 cut(s) 502, 630
BmsI GCATC 4 cut(s) 98, 109, 361, 693
BpmI CTGGAG 1 cut(s) 466
BsaAI YACGTR 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 143
Bse1I ACTGG 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 502, 630
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 31, 143
BseMI GCAATG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 483
BseXI GCAGC 7 cut(s) 47, 290, 551, 564, 567, 570, 573
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 613
BslI CCNNNNNNNGG 2 cut(s) 31, 143
BsmAI GTCTC 1 cut(s) 693
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 613
Bsp143I GATC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 142
BspANI GGCC 1 cut(s) 43
BspHI TCATGA 1 cut(s) 115
BspQI GCTCTTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 483
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 502, 630
Bst4CI ACNGT 3 cut(s) 106, 572, 652
Bst6I CTCTTC 2 cut(s) 393, 417
BstAPI GCANNNNNTGC 1 cut(s) 564
BstBAI YACGTR 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 614
BstDSI CCRYGG 1 cut(s) 142
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 693
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 4 cut(s) 549, 558, 561, 564
BstNI CCWGG 2 cut(s) 502, 630
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 500, 628
BstV1I GCAGC 7 cut(s) 47, 290, 551, 564, 567, 570, 573
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 577
CaiI CAGNNNCTG 1 cut(s) 564
CciI TCATGA 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 42, 257
CsiI ACCWGGT 1 cut(s) 628
Csp6I GTAC 4 cut(s) 102, 432, 626, 679
CspCI CAANNNNNGTGG 2 cut(s) 39, 74
CviAII CATG 4 cut(s) 73, 116, 143, 446
CviJI RGCY 6 cut(s) 43, 281, 384, 564, 671, 712
CviKI_1 RGCY 6 cut(s) 43, 281, 384, 564, 671, 712
CviQI GTAC 4 cut(s) 102, 432, 626, 679
DdeI CTNAG 1 cut(s) 614
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 393, 417
EarI CTCTTC 2 cut(s) 393, 417
Eco130I CCWWGG 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 500, 628
EcoT14I CCWWGG 1 cut(s) 142
EcoT22I ATGCAT 2 cut(s) 78, 376
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 4 cut(s) 76, 119, 146, 449
FatI CATG 4 cut(s) 72, 115, 142, 445
FauNDI CATATG 1 cut(s) 78
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 7 cut(s) 36, 279, 553, 556, 559, 562, 565
Fsp4HI GCNGC 7 cut(s) 36, 279, 553, 556, 559, 562, 565
GluI GCNGC 7 cut(s) 36, 279, 553, 556, 559, 562, 565
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 4 cut(s) 76, 119, 146, 449
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 2 cut(s) 356, 473
HphI GGTGA 1 cut(s) 616
Hpy166II GTNNAC 1 cut(s) 575
Hpy188I TCNGA 5 cut(s) 166, 219, 348, 361, 472
Hpy188III TCNNGA 2 cut(s) 116, 700
Hpy8I GTNNAC 1 cut(s) 575
HpyAV CCTTC 3 cut(s) 148, 343, 503
HpyCH4III ACNGT 3 cut(s) 106, 572, 652
HpyCH4IV ACGT 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 4 cut(s) 549, 558, 561, 564
HpyF3I CTNAG 1 cut(s) 614
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 4 cut(s) 76, 119, 146, 449
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 1 cut(s) 205
LguI GCTCTTC 1 cut(s) 393
LmnI GCTCC 1 cut(s) 485
Lsp1109I GCAGC 7 cut(s) 47, 290, 551, 564, 567, 570, 573
LweI GCATC 4 cut(s) 98, 109, 361, 693
MabI ACCWGGT 1 cut(s) 628
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 9 cut(s) 184, 330, 401, 407, 410, 419, 434, 607, 610
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 613
MluCI AATT 7 cut(s) 152, 181, 237, 249, 295, 517, 724
MnlI CCTC 7 cut(s) 123, 172, 304, 346, 412, 418, 611
Mph1103I ATGCAT 2 cut(s) 78, 376
MroXI GAANNNNTTC 1 cut(s) 672
MslI CAYNNNNRTG 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 564
MspR9I CCNGG 2 cut(s) 502, 630
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 2 cut(s) 502, 630
MwoI GCNNNNNNNGC 4 cut(s) 549, 558, 561, 564
NcoI CCATGG 1 cut(s) 142
NdeI CATATG 1 cut(s) 78
NdeII GATC 1 cut(s) 205
NlaIII CATG 4 cut(s) 76, 119, 146, 449
NmuCI GTSAC 1 cut(s) 8
NsiI ATGCAT 2 cut(s) 78, 376
NspI RCATGY 1 cut(s) 76
PagI TCATGA 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 672
PfeI GAWTC 2 cut(s) 356, 473
PkrI GCNGC 7 cut(s) 37, 280, 554, 557, 560, 563, 566
Ppu21I YACGTR 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 500, 628
PspGI CCWGG 2 cut(s) 500, 628
PspPI GGNCC 2 cut(s) 42, 257
PstNI CAGNNNCTG 1 cut(s) 564
PvuII CAGCTG 1 cut(s) 564
RsaI GTAC 4 cut(s) 103, 433, 627, 680
RsaNI GTAC 4 cut(s) 102, 432, 626, 679
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 393
SatI GCNGC 7 cut(s) 36, 279, 553, 556, 559, 562, 565
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 2 cut(s) 42, 257
ScaI AGTACT 1 cut(s) 680
ScrFI CCNGG 2 cut(s) 502, 630
SduI GDGCHC 1 cut(s) 613
SexAI ACCWGGT 1 cut(s) 628
SfaNI GCATC 4 cut(s) 98, 109, 361, 693
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 77
Sse9I AATT 7 cut(s) 152, 181, 237, 249, 295, 517, 724
StyD4I CCNGG 2 cut(s) 500, 628
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 3 cut(s) 106, 572, 652
TaiI ACGT 1 cut(s) 288
TaqI TCGA 2 cut(s) 195, 699
TasI AATT 7 cut(s) 152, 181, 237, 249, 295, 517, 724
TatI WGTACW 2 cut(s) 431, 678
TfiI GAWTC 2 cut(s) 356, 473
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 7 cut(s) 35, 278, 552, 555, 558, 561, 564
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 9 cut(s) 175, 330, 408, 453, 522, 608, 654, 659, 681
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 5 cut(s) 152, 181, 249, 517, 724
XceI RCATGY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 672
ZrmI AGTACT 1 cut(s) 680
Zsp2I ATGCAT 2 cut(s) 78, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.