Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009324

Physical Location & Seq

Genomic Coordinates Forward (+)

3752885 .. 3754029

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G077100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCAGAGGGACCAACAGTTTGACCCCAACAAGGCAGCTCCCCCCTTTGCAAATCAAGTGGGTAATAATTACATGCATATTCCAGTTGCATCTGCGCGTGGGGCAGTTTTACCTCATGAGGCAAAGCACATCAAACCTTTCCATGGTGTTGAATTTCAAACCTCTGACATTTGCCCGAAGAATTTCATTATCTTCGACCAGACTGATCATCGAAGTCAGATAATGTTCAATCCTGCAATTGCCCACAAAATTACTGGTCCTGCCTTTAACATCTGTGCAGCTTACATCCAAGACAATCTGGGATTGAACGAGGGAAATAATGAGGATAGAGAAACATCCTCTTCTCTGAAGGAGGACTCAGATGATATTGATGCATTGTTGAGCTTGGAAGAGGAAGAGCTGGAAGAATATGACGAGGAAGAGGTCAGTACAGCACGAACTCATGGAAATTATGGGAGCATGTCCCCTGATTCTTGCTCCAATTATGGTTTGAAAACCAAGAAGAATAGGCAATGCTCTTCACTTGGAAAATCTTCTGGCATTGGTAGCAGCAGCTGCAACAGTGAAAGGAAGCGACAGAAAATGAAGAAGATGGTGAGGGTGCTGAGAGGGATTGTACCTGGTGGGAATGAAATGAACACTGTCGATGTTCTAGATGAAGCTGTGCAATACTTGAAGTCTCTCAAGGTTGAACTGCAGAACCTTGGAGTTGAGAATTTGAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.88

Weight (kDa)

5.22

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29950 AT1G29950
fragaria_vesca	FvH4_3g06000
malus_domestica	MD05G1288000.v1.1 MD05G1288300.v1.1 MD05G1288500.v1.1 MD05G1288800.v1.1 MD10G1264900.v1.1
prunus_persica	Prupe.4G077100_v2.0.a1
pyrus_communis	pycom05g26630 pycom10g22100
rosa_chinensis	RchiOBHm_Chr5g0013411
rosa_laevigata	RLG00000032017
rosa_multiflora	Rmu_sc0003458.1_g000015
rosa_roxburghii	Rroxscaffold_1G00063150
rosa_rugosa	Rorug05G0009000 Rorug05G0009100
rosa_samantha	Rh5AG104500 Rh5BG100800 Rh5CG112700 Rh5DG099400
rosa_wichuraiana	Rw5G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	97
AcsI	RAATTY	3 cut(s)	152, 181, 715
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	2 cut(s)	430, 618
AfiI	CCNNNNNNNGG	2 cut(s)	31, 143
AgsI	TTSAA	8 cut(s)	152, 158, 229, 307, 493, 676, 692, 721
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	6 cut(s)	38, 281, 384, 400, 555, 662
AluI	AGCT	6 cut(s)	38, 281, 384, 400, 555, 662
Alw26I	GTCTC	1 cut(s)	684
AlwNI	CAGNNNCTG	1 cut(s)	555
ApeKI	GCWGC	5 cut(s)	35, 278, 549, 552, 555
ApoI	RAATTY	3 cut(s)	152, 181, 715
ArsI	GACNNNNNNTTYG	1 cut(s)	34
Asp700I	GAANNNNTTC	2 cut(s)	182, 532
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	10, 257
AsuHPI	GGTGA	1 cut(s)	607
AvaII	GGWCC	2 cut(s)	10, 257
BbvI	GCAGC	5 cut(s)	47, 290, 542, 561, 564
BccI	CCATC	1 cut(s)	586
BciT130I	CCWGG	1 cut(s)	621
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	1 cut(s)	653
BfmI	CTRYAG	1 cut(s)	695
BisI	GCNGC	5 cut(s)	36, 279, 550, 553, 556
BlsI	GCNGC	5 cut(s)	37, 280, 551, 554, 557
Bme1390I	CCNGG	1 cut(s)	621
Bme18I	GGWCC	2 cut(s)	10, 257
BmgT120I	GGNCC	2 cut(s)	10, 257
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	621
BmsI	GCATC	2 cut(s)	98, 361
BpuEI	CTTGAG	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	142, 703
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 143
Bse1I	ACTGG	2 cut(s)	83, 259
Bse3DI	GCAATG	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	2 cut(s)	142, 703
BseGI	GGATG	2 cut(s)	285, 335
BseLI	CCNNNNNNNGG	2 cut(s)	31, 143
BseMI	GCAATG	1 cut(s)	518
BseMII	CTCAG	2 cut(s)	372, 596
BseNI	ACTGG	2 cut(s)	83, 259
BseXI	GCAGC	5 cut(s)	47, 290, 542, 561, 564
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	97
BslFI	GGGAC	2 cut(s)	23, 448
BslI	CCNNNNNNNGG	2 cut(s)	31, 143
BsmAI	GTCTC	1 cut(s)	684
BsmFI	GGGAC	2 cut(s)	23, 448
Bsp143I	GATC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	371, 597
BspFNI	CGCG	1 cut(s)	97
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	11
BspMAI	CTGCAG	1 cut(s)	699
BspQI	GCTCTTC	2 cut(s)	390, 523
BsrDI	GCAATG	1 cut(s)	518
BsrI	ACTGG	2 cut(s)	83, 259
BssECI	CCNNGG	2 cut(s)	142, 703
BssMI	GATC	1 cut(s)	205
BssT1I	CCWWGG	2 cut(s)	142, 703
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	3 cut(s)	18, 563, 643
Bst6I	CTCTTC	5 cut(s)	346, 384, 390, 414, 523
BstAPI	GCANNNNNTGC	1 cut(s)	555
BstDEI	CTNAG	2 cut(s)	358, 605
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	285, 335
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 546, 555
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	2 cut(s)	76, 463
BstSCI	CCNGG	1 cut(s)	619
BstSFI	CTRYAG	1 cut(s)	695
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	5 cut(s)	47, 290, 542, 561, 564
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	285, 335
BtsIMutI	CAGTG	2 cut(s)	568, 639
CaiI	CAGNNNCTG	1 cut(s)	555
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	10, 257
CsiI	ACCWGGT	1 cut(s)	619
Csp6I	GTAC	2 cut(s)	429, 617
CspCI	CAANNNNNGTGG	2 cut(s)	39, 74
CviAII	CATG	5 cut(s)	73, 116, 143, 443, 460
CviJI	RGCY	6 cut(s)	38, 281, 384, 400, 555, 662
CviKI_1	RGCY	6 cut(s)	38, 281, 384, 400, 555, 662
CviQI	GTAC	2 cut(s)	429, 617
DdeI	CTNAG	2 cut(s)	358, 605
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eam1104I	CTCTTC	5 cut(s)	346, 384, 390, 414, 523
EarI	CTCTTC	5 cut(s)	346, 384, 390, 414, 523
Eco130I	CCWWGG	2 cut(s)	142, 703
Eco47I	GGWCC	2 cut(s)	10, 257
Eco57I	CTGAAG	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	142, 703
EcoT22I	ATGCAT	2 cut(s)	78, 376
ErhI	CCWWGG	2 cut(s)	142, 703
FaeI	CATG	5 cut(s)	76, 119, 146, 446, 463
FaiI	YATR	9 cut(s)	74, 78, 117, 144, 411, 444, 453, 461, 486
FaqI	GGGAC	2 cut(s)	23, 448
FatI	CATG	5 cut(s)	72, 115, 142, 442, 459
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	36, 279, 550, 553, 556
FokI	GGATG	2 cut(s)	272, 322
Fsp4HI	GCNGC	5 cut(s)	36, 279, 550, 553, 556
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	5 cut(s)	36, 279, 550, 553, 556
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	5 cut(s)	76, 119, 146, 446, 463
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	2 cut(s)	356, 470
HphI	GGTGA	1 cut(s)	607
Hpy188I	TCNGA	4 cut(s)	166, 219, 348, 361
Hpy188III	TCNNGA	2 cut(s)	116, 653
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	3 cut(s)	18, 563, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 546, 555
HpyF3I	CTNAG	2 cut(s)	358, 605
Hsp92II	CATG	5 cut(s)	76, 119, 146, 446, 463
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	205
LguI	GCTCTTC	2 cut(s)	390, 523
LmnI	GCTCC	3 cut(s)	43, 456, 482
Lsp1109I	GCAGC	5 cut(s)	47, 290, 542, 561, 564
LweI	GCATC	2 cut(s)	98, 361
MabI	ACCWGGT	1 cut(s)	619
MaeI	CTAG	1 cut(s)	653
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MfeI	CAATTG	1 cut(s)	237
MluCI	AATT	8 cut(s)	67, 152, 181, 237, 249, 448, 481, 715
MlyI	GAGTC	1 cut(s)	350
Mph1103I	ATGCAT	2 cut(s)	78, 376
MroXI	GAANNNNTTC	2 cut(s)	182, 532
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	555
MspR9I	CCNGG	1 cut(s)	621
MunI	CAATTG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	101, 546, 555
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	5 cut(s)	76, 119, 146, 446, 463
NlaIV	GGNNCC	1 cut(s)	11
NsiI	ATGCAT	2 cut(s)	78, 376
NspI	RCATGY	2 cut(s)	76, 463
PagI	TCATGA	1 cut(s)	115
PciSI	GCTCTTC	2 cut(s)	390, 523
PdmI	GAANNNNTTC	2 cut(s)	182, 532
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	5 cut(s)	37, 280, 551, 554, 557
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	10, 257
PstI	CTGCAG	1 cut(s)	699
PstNI	CAGNNNCTG	1 cut(s)	555
PvuII	CAGCTG	1 cut(s)	555
RsaI	GTAC	2 cut(s)	430, 618
RsaNI	GTAC	2 cut(s)	429, 617
SapI	GCTCTTC	2 cut(s)	390, 523
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	5 cut(s)	36, 279, 550, 553, 556
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	10, 257
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	621
SexAI	ACCWGGT	1 cut(s)	619
SfaNI	GCATC	2 cut(s)	98, 361
SfcI	CTRYAG	1 cut(s)	695
SinI	GGWCC	2 cut(s)	10, 257
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	8 cut(s)	67, 152, 181, 237, 249, 448, 481, 715
SspMI	CTAG	1 cut(s)	653
StyD4I	CCNGG	1 cut(s)	619
StyI	CCWWGG	2 cut(s)	142, 703
TaaI	ACNGT	3 cut(s)	18, 563, 643
TaqI	TCGA	3 cut(s)	195, 211, 645
TasI	AATT	8 cut(s)	67, 152, 181, 237, 249, 448, 481, 715
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	2 cut(s)	568, 646
TseI	GCWGC	5 cut(s)	35, 278, 549, 552, 555
TspDTI	ATGAA	5 cut(s)	175, 599, 645, 650, 672
TspRI	CASTG	2 cut(s)	568, 646
VpaK11BI	GGWCC	2 cut(s)	10, 257
XapI	RAATTY	3 cut(s)	152, 181, 715
XbaI	TCTAGA	1 cut(s)	652
XceI	RCATGY	2 cut(s)	76, 463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmnI	GAANNNNTTC	2 cut(s)	182, 532
XspI	CTAG	1 cut(s)	653
Zsp2I	ATGCAT	2 cut(s)	78, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.