Rh5CG112700

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0009324
Physical Location & Seq
Forward (+)
9225257 .. 9225997
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG112700.1

Sequence Viewer

Length: 741 bp
ATGCAGAGTGACCAAGCATTTGACCCAAACAAGGCAGCACGGCCCTTTGCAAATCAAGTGGGTAATAACTACATGCATATGCCTGTGGCATCTCCTTTTGGTACTGTTTTACCTCACGATGCAATGCACTACAAACCCTTCCATGGTGTTGAATTTCAAACCTCTGACATTTGCCCAAAGAATTTCATAATCTTTGACCAGACTGATCATCGCAGTCAGATTATGTTCAATCCTGCAATTGCCCACAAAATTTCTGGTCCTGCCTTTGACATCTGTGCAGCTTACATGCAAGACAATTTGGGATTGATTGAGGGAAATAATGAGAATAGAGAAACATCTTCATCTCTGAAGGAGGATTCAGATGATATTGATGCATTGTTGAGCTTGGAAGATGAAGAAGAGCAAGAAGAATATGATGAGGAAGAGGTCAGTACAGCACGAACTCATGGAAACTATGGGAGTTCATACTCTGATTCTTGCTCCAGTTATGGTTTGAAAACCAGGAATGAAGGGCAGAATTTTTCACTTGAAAAAACTTCTGGCATTGGTAGCAGCAGCAGCAGCAGCTGCAACAGTGAAAGAAAACGAAAGAAAATGAAGAAGATGGTGAGAGCACTAAGAGGGATTGTACCTGGTGGGAATGAAATGAACACGGTTGCTGTTATAGATGAAGCTGTTCAGTACTTGAAGTCTCTCAAAGTCGAGATGCAGAAGCTTGGAGTTGGGAATTTGAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.28

Weight (kDa)

5.03

Isoelectric Point (pI)

57.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 191 - 246 1.2e-18 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 5 cut(s) 152, 181, 249, 517, 727
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 4 cut(s) 103, 433, 630, 683
AfiI CCNNNNNNNGG 2 cut(s) 31, 143
AgsI TTSAA 7 cut(s) 152, 158, 229, 496, 530, 688, 733
AjnI CCWGG 2 cut(s) 500, 631
AluBI AGCT 5 cut(s) 281, 384, 567, 674, 715
AluI AGCT 5 cut(s) 281, 384, 567, 674, 715
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 1 cut(s) 696
AlwNI CAGNNNCTG 1 cut(s) 567
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 8 cut(s) 35, 278, 552, 555, 558, 561, 564, 567
ApoI RAATTY 5 cut(s) 152, 181, 249, 517, 727
ArsI GACNNNNNNTTYG 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 675
AspS9I GGNCC 2 cut(s) 42, 257
AsuHPI GGTGA 1 cut(s) 619
AvaII GGWCC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 8 cut(s) 47, 290, 554, 564, 567, 570, 573, 576
BccI CCATC 1 cut(s) 598
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 502, 633
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 696
BisI GCNGC 8 cut(s) 36, 279, 553, 556, 559, 562, 565, 568
BlsI GCNGC 8 cut(s) 37, 280, 554, 557, 560, 563, 566, 569
BmcAI AGTACT 1 cut(s) 683
Bme1390I CCNGG 2 cut(s) 502, 633
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 42, 257
BmrFI CCNGG 2 cut(s) 502, 633
BmsI GCATC 4 cut(s) 98, 109, 361, 696
BpmI CTGGAG 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 143
Bse1I ACTGG 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 502, 633
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 31, 143
BseMI GCAATG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 483
BseXI GCAGC 8 cut(s) 47, 290, 554, 564, 567, 570, 573, 576
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 616
BslI CCNNNNNNNGG 2 cut(s) 31, 143
BsmAI GTCTC 1 cut(s) 696
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 142
BspANI GGCC 1 cut(s) 43
BspQI GCTCTTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 483
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 502, 633
Bst4CI ACNGT 3 cut(s) 106, 575, 655
Bst6I CTCTTC 2 cut(s) 393, 417
BstAPI GCANNNNNTGC 1 cut(s) 567
BstDEI CTNAG 1 cut(s) 617
BstDSI CCRYGG 1 cut(s) 142
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 696
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 5 cut(s) 549, 558, 561, 564, 567
BstNI CCWGG 2 cut(s) 502, 633
BstNSI RCATGY 2 cut(s) 76, 289
BstSCI CCNGG 2 cut(s) 500, 631
BstV1I GCAGC 8 cut(s) 47, 290, 554, 564, 567, 570, 573, 576
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 580
CaiI CAGNNNCTG 1 cut(s) 567
Cfr13I GGNCC 2 cut(s) 42, 257
CsiI ACCWGGT 1 cut(s) 631
Csp6I GTAC 4 cut(s) 102, 432, 629, 682
CspCI CAANNNNNGTGG 2 cut(s) 39, 74
CviAII CATG 4 cut(s) 73, 143, 286, 446
CviJI RGCY 6 cut(s) 43, 281, 384, 567, 674, 715
CviKI_1 RGCY 6 cut(s) 43, 281, 384, 567, 674, 715
CviQI GTAC 4 cut(s) 102, 432, 629, 682
DdeI CTNAG 1 cut(s) 617
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 393, 417
EarI CTCTTC 2 cut(s) 393, 417
Eco130I CCWWGG 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 500, 631
EcoT14I CCWWGG 1 cut(s) 142
EcoT22I ATGCAT 2 cut(s) 78, 376
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 4 cut(s) 76, 146, 289, 449
FatI CATG 4 cut(s) 72, 142, 285, 445
FauNDI CATATG 1 cut(s) 78
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 8 cut(s) 36, 279, 553, 556, 559, 562, 565, 568
Fsp4HI GCNGC 8 cut(s) 36, 279, 553, 556, 559, 562, 565, 568
GluI GCNGC 8 cut(s) 36, 279, 553, 556, 559, 562, 565, 568
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 4 cut(s) 76, 146, 289, 449
HindIII AAGCTT 1 cut(s) 713
HinfI GANTC 2 cut(s) 356, 473
HphI GGTGA 1 cut(s) 619
Hpy188I TCNGA 5 cut(s) 166, 219, 348, 361, 472
Hpy188III TCNNGA 2 cut(s) 116, 703
HpyAV CCTTC 3 cut(s) 148, 343, 503
HpyCH4III ACNGT 3 cut(s) 106, 575, 655
HpyF10VI GCNNNNNNNGC 5 cut(s) 549, 558, 561, 564, 567
HpyF3I CTNAG 1 cut(s) 617
Hsp92II CATG 4 cut(s) 76, 146, 289, 449
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 1 cut(s) 205
LguI GCTCTTC 1 cut(s) 393
LmnI GCTCC 1 cut(s) 485
Lsp1109I GCAGC 8 cut(s) 47, 290, 554, 564, 567, 570, 573, 576
LweI GCATC 4 cut(s) 98, 109, 361, 696
MabI ACCWGGT 1 cut(s) 631
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 8 cut(s) 330, 401, 407, 410, 419, 434, 610, 613
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 616
MluCI AATT 7 cut(s) 152, 181, 237, 249, 295, 517, 727
MnlI CCTC 7 cut(s) 123, 172, 304, 346, 412, 418, 614
Mph1103I ATGCAT 2 cut(s) 78, 376
MroXI GAANNNNTTC 1 cut(s) 675
MslI CAYNNNNRTG 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 567
MspR9I CCNGG 2 cut(s) 502, 633
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 2 cut(s) 502, 633
MwoI GCNNNNNNNGC 5 cut(s) 549, 558, 561, 564, 567
NcoI CCATGG 1 cut(s) 142
NdeI CATATG 1 cut(s) 78
NdeII GATC 1 cut(s) 205
NlaIII CATG 4 cut(s) 76, 146, 289, 449
NmuCI GTSAC 1 cut(s) 8
NsiI ATGCAT 2 cut(s) 78, 376
NspI RCATGY 2 cut(s) 76, 289
PciSI GCTCTTC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 356, 473
PkrI GCNGC 8 cut(s) 37, 280, 554, 557, 560, 563, 566, 569
Psp6I CCWGG 2 cut(s) 500, 631
PspGI CCWGG 2 cut(s) 500, 631
PspPI GGNCC 2 cut(s) 42, 257
PstNI CAGNNNCTG 1 cut(s) 567
PvuII CAGCTG 1 cut(s) 567
RsaI GTAC 4 cut(s) 103, 433, 630, 683
RsaNI GTAC 4 cut(s) 102, 432, 629, 682
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 393
SatI GCNGC 8 cut(s) 36, 279, 553, 556, 559, 562, 565, 568
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 2 cut(s) 42, 257
ScaI AGTACT 1 cut(s) 683
ScrFI CCNGG 2 cut(s) 502, 633
SduI GDGCHC 1 cut(s) 616
SetI ASST 9 cut(s) 115, 164, 283, 386, 429, 569, 634, 676, 717
SexAI ACCWGGT 1 cut(s) 631
SfaNI GCATC 4 cut(s) 98, 109, 361, 696
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 77
Sse9I AATT 7 cut(s) 152, 181, 237, 249, 295, 517, 727
StyD4I CCNGG 2 cut(s) 500, 631
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 3 cut(s) 106, 575, 655
TaqI TCGA 1 cut(s) 702
TasI AATT 7 cut(s) 152, 181, 237, 249, 295, 517, 727
TatI WGTACW 2 cut(s) 431, 681
TfiI GAWTC 2 cut(s) 356, 473
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 8 cut(s) 35, 278, 552, 555, 558, 561, 564, 567
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 9 cut(s) 175, 330, 408, 453, 522, 611, 657, 662, 684
TspRI CASTG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 5 cut(s) 152, 181, 249, 517, 727
XceI RCATGY 2 cut(s) 76, 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 675
ZrmI AGTACT 1 cut(s) 683
Zsp2I ATGCAT 2 cut(s) 78, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.