Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Forward (+)

4914957 .. 4916439

Gene Structure 1483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGGTTCTAATGAAGCAAGGGACTTGTTCCAAGCTCAGACTCATCTGTACAAACACATATTCAACTTTGCAAGTTCTATGTCACTCAAGTGTGCAGTTCAACTCGGCATACCGGACGTGATCGATAGGCACGGTGAACCTATTTCTCTACCGGAATTGGTCACAGCACTTCAGCTTCACCCGGATAAAACCGGCTATGTGCAGCGGCTCATGCGCCTAATGGTACACTCTGGTTTCTTTGCTACAATACATGTGTGCAGGAATCAAGATGAAGAGGAGGAAGAGGCATATGACCTTACAACGTCTTCTAGGCTCCTCCTGAAAGACAAGGTCCCGAGTATGTTACCCTTTGTTACAGCGATGCTTGATCCAGCTTTAACAACGCCATGGCAGTTTTTGGGAAACTGGTTCTGTGGGAATGAGGTTACACCCTTTGAGACTGCGCATGGAATGGGTTTATGGGAGTATGGACATAAAAACCCTGGATTCAACCGTGTTTTCAATGAAGCAATGGCCAGTGATTCAGGAATGATGAACTTGGTCATCAAAGACTGCAAGCCAAACTTTGAGGGGTTGAGTTCATTAGTTGATGTAGGAGGTGGTACAGGAAAAGTTGCTAGGATTCTTTGTGAGGCTTTTCCCAATTTGAAATGCACAGTTCTTGAACTTCCACAAGTTGTTGCTAACTTGCAGGATAGTGCAAATTTGAAGTTCATTGCTGGTGATATGTTCCATGCTATTCCTCCTGCTGATGCTATTTTGCTCAAGTTAACTTTACATGCTTTGAGCGACGAGGAATGCTTGAAGGTTCTGAAGAAATGCAGGGAAGCTATTCCAGACAATGGGAAAGGAAAGGTAATTATCATAGACATTGTGATAAACGAGGAGGGAGACGAGCACGAATCAACTGAAGCAAAGCTCTTCTTTGACATGTTGATGATGGTTGTGGTGACCGGAAGAGAGAGAAGAGAGAAAGAGTGGGAAAAGCTGATTCTGGAGGCTGGTTTCAGCAAGTACCAGATAACACCCATCTTTGGTTTGAGATCCCTTATTGAAGTTTATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

356

Amino Acids

39.75

Weight (kDa)

5.28

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	18 - 109	1.5e-18	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	130 - 337	8.5e-52	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	444
AccB7I	CCANNNNNTGG	1 cut(s)	842
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	2 cut(s)	362, 1038
AcoI	YGGCCR	1 cut(s)	513
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	3 cut(s)	155, 833, 930
AfaI	GTAC	4 cut(s)	50, 225, 604, 1016
AfiI	CCNNNNNNNGG	2 cut(s)	842, 1034
AflIII	ACRYGT	2 cut(s)	250, 930
AgsI	TTSAA	9 cut(s)	64, 101, 490, 502, 649, 665, 709, 805, 1055
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	481
AleI	CACNNNNGTG	1 cut(s)	88
AluBI	AGCT	6 cut(s)	35, 175, 374, 830, 919, 988
AluI	AGCT	6 cut(s)	35, 175, 374, 830, 919, 988
Alw21I	GWGCWC	1 cut(s)	900
Alw26I	GTCTC	2 cut(s)	431, 885
AlwI	GGATC	2 cut(s)	362, 1038
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	1 cut(s)	513
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	831
AspLEI	GCGC	2 cut(s)	216, 445
AspS9I	GGNCC	1 cut(s)	331
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	4 cut(s)	146, 170, 734, 961
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	900
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	2 cut(s)	934, 1037
BciT130I	CCWGG	1 cut(s)	483
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	431, 885
BfaI	CTAG	2 cut(s)	309, 618
BisI	GCNGC	2 cut(s)	203, 206
BlsI	GCNGC	2 cut(s)	204, 207
Bme1390I	CCNGG	2 cut(s)	182, 483
Bme18I	GGWCC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	334
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	314, 333
BmrFI	CCNGG	2 cut(s)	182, 483
BmsI	GCATC	2 cut(s)	351, 742
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	1016
BpuEI	CTTGAG	2 cut(s)	71, 749
BpuMI	CCSGG	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	386, 481
BsaWI	WCCGGW	3 cut(s)	112, 151, 953
Bsc4I	CCNNNNNNNGG	2 cut(s)	842, 1034
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	410, 516
Bse3DI	GCAATG	2 cut(s)	516, 714
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	386, 481
BseLI	CCNNNNNNNGG	2 cut(s)	842, 1034
BseMI	GCAATG	2 cut(s)	516, 714
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	410, 516
BseRI	GAGGAG	3 cut(s)	290, 305, 899
BseXI	GCAGC	1 cut(s)	214
BsgI	GTGCAG	3 cut(s)	114, 221, 277
BshFI	GGCC	1 cut(s)	515
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	900
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	5 cut(s)	113, 152, 182, 192, 954
BslFI	GGGAC	2 cut(s)	35, 317
BslI	CCNNNNNNNGG	2 cut(s)	842, 1034
BsmAI	GTCTC	2 cut(s)	431, 885
BsmBI	CGTCTC	1 cut(s)	885
BsmFI	GGGAC	2 cut(s)	35, 317
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	1 cut(s)	515
BsoBI	CYCGRG	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	900
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	120, 367, 1043
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	515
BspCNI	CTCAG	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	314, 333
BspPI	GGATC	2 cut(s)	362, 1038
BspQI	GCTCTTC	1 cut(s)	926
BsrDI	GCAATG	2 cut(s)	516, 714
BsrFI	RCCGGY	1 cut(s)	191
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	410, 516
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	386, 481
BssMI	GATC	3 cut(s)	120, 367, 1043
BssT1I	CCWWGG	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	134, 494, 658
Bst6I	CTCTTC	5 cut(s)	267, 276, 926, 952, 961
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	2 cut(s)	36, 1065
BstDSI	CCRYGG	1 cut(s)	386
BstEII	GGTNACC	1 cut(s)	949
BstHHI	GCGC	2 cut(s)	216, 445
BstKTI	GATC	3 cut(s)	123, 370, 1046
BstMAI	GTCTC	2 cut(s)	431, 885
BstMBI	GATC	3 cut(s)	120, 367, 1043
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	3 cut(s)	254, 782, 934
BstPI	GGTNACC	1 cut(s)	949
BstSCI	CCNGG	2 cut(s)	180, 481
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	1043
BstYI	RGATCY	1 cut(s)	1043
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	515
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	386
BtgZI	GCGATG	1 cut(s)	374
BtrI	CACGTC	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	557
CfoI	GCGC	2 cut(s)	216, 445
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	331
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	4 cut(s)	49, 224, 603, 1015
CviAII	CATG	7 cut(s)	211, 251, 387, 446, 734, 779, 931
CviQI	GTAC	4 cut(s)	49, 224, 603, 1015
DdeI	CTNAG	2 cut(s)	36, 1065
DpnI	GATC	3 cut(s)	122, 369, 1045
DpnII	GATC	3 cut(s)	120, 367, 1043
EaeI	YGGCCR	1 cut(s)	513
Eam1104I	CTCTTC	5 cut(s)	267, 276, 926, 952, 961
EarI	CTCTTC	5 cut(s)	267, 276, 926, 952, 961
Eco130I	CCWWGG	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	331
Eco57I	CTGAAG	3 cut(s)	155, 833, 930
Eco88I	CYCGRG	1 cut(s)	334
Eco91I	GGTNACC	1 cut(s)	949
EcoO109I	RGGNCCY	1 cut(s)	331
EcoO65I	GGTNACC	1 cut(s)	949
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
Esp3I	CGTCTC	1 cut(s)	885
FaeI	CATG	7 cut(s)	214, 254, 390, 449, 737, 782, 934
FalI	AAGNNNNNCTT	4 cut(s)	548, 580, 908, 940
FaqI	GGGAC	2 cut(s)	35, 317
FatI	CATG	7 cut(s)	210, 250, 386, 445, 733, 778, 930
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	203, 206
Fsp4HI	GCNGC	2 cut(s)	203, 206
FspBI	CTAG	2 cut(s)	309, 618
FspI	TGCGCA	1 cut(s)	444
GlaI	GCGC	2 cut(s)	215, 444
GluI	GCNGC	2 cut(s)	203, 206
GsuI	CTGGAG	1 cut(s)	1016
HaeIII	GGCC	1 cut(s)	515
HapII	CCGG	5 cut(s)	113, 152, 182, 192, 954
HhaI	GCGC	2 cut(s)	216, 445
Hin1II	CATG	7 cut(s)	214, 254, 390, 449, 737, 782, 934
Hin6I	GCGC	2 cut(s)	214, 443
HinP1I	GCGC	2 cut(s)	214, 443
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HinfI	GANTC	7 cut(s)	40, 262, 486, 521, 622, 902, 991
HpaI	GTTAAC	1 cut(s)	771
HpaII	CCGG	5 cut(s)	113, 152, 182, 192, 954
HphI	GGTGA	4 cut(s)	146, 170, 734, 961
Hpy166II	GTNNAC	3 cut(s)	137, 226, 771
Hpy188I	TCNGA	2 cut(s)	39, 813
Hpy188III	TCNNGA	7 cut(s)	266, 319, 334, 525, 662, 836, 995
Hpy8I	GTNNAC	3 cut(s)	137, 226, 771
Hpy99I	CGWCG	1 cut(s)	794
HpyAV	CCTTC	1 cut(s)	799
HpyCH4III	ACNGT	3 cut(s)	134, 494, 658
HpyCH4IV	ACGT	2 cut(s)	117, 302
HpyCH4V	TGCA	9 cut(s)	71, 95, 202, 258, 555, 654, 691, 701, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	2 cut(s)	36, 1065
HpySE526I	ACGT	2 cut(s)	117, 302
Hsp92II	CATG	7 cut(s)	214, 254, 390, 449, 737, 782, 934
HspAI	GCGC	2 cut(s)	214, 443
KspAI	GTTAAC	1 cut(s)	771
Kzo9I	GATC	3 cut(s)	120, 367, 1043
LguI	GCTCTTC	1 cut(s)	926
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	351, 742
MaeI	CTAG	2 cut(s)	309, 618
MaeII	ACGT	2 cut(s)	117, 302
MaeIII	GTNAC	6 cut(s)	81, 160, 342, 352, 424, 949
MalI	GATC	3 cut(s)	122, 369, 1045
MboI	GATC	3 cut(s)	120, 367, 1043
MboII	GAAGA	7 cut(s)	284, 293, 297, 826, 913, 969, 978
MflI	RGATCY	1 cut(s)	1043
MhlI	GDGCHC	1 cut(s)	900
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	4 cut(s)	155, 643, 703, 858
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	34
Mox20I	TGGCCA	1 cut(s)	515
MroXI	GAANNNNTTC	1 cut(s)	831
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	2 cut(s)	377, 770
MslI	CAYNNNNRTG	2 cut(s)	88, 935
Msp20I	TGGCCA	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	5 cut(s)	113, 152, 182, 192, 954
MspR9I	CCNGG	2 cut(s)	182, 483
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	211
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	386
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	3 cut(s)	120, 367, 1043
NlaIII	CATG	7 cut(s)	214, 254, 390, 449, 737, 782, 934
NlaIV	GGNNCC	2 cut(s)	314, 333
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	3 cut(s)	81, 160, 949
NsbI	TGCGCA	1 cut(s)	444
NspI	RCATGY	3 cut(s)	254, 782, 934
OliI	CACNNNNGTG	1 cut(s)	88
PciI	ACATGT	2 cut(s)	250, 930
PciSI	GCTCTTC	1 cut(s)	926
PctI	GAATGC	1 cut(s)	803
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	6 cut(s)	262, 486, 521, 622, 902, 991
PflFI	GACNNNGTC	1 cut(s)	329
PflMI	CCANNNNNTGG	1 cut(s)	842
PkrI	GCNGC	2 cut(s)	204, 207
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	331
PscI	ACATGT	2 cut(s)	250, 930
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	481
PspEI	GGTNACC	1 cut(s)	949
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	314, 333
PspPI	GGNCC	1 cut(s)	331
PspPPI	RGGWCCY	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	1043
PsyI	GACNNNGTC	1 cut(s)	329
RsaI	GTAC	4 cut(s)	50, 225, 604, 1016
RsaNI	GTAC	4 cut(s)	49, 224, 603, 1015
RseI	CAYNNNNRTG	2 cut(s)	88, 935
SapI	GCTCTTC	1 cut(s)	926
SaqAI	TTAA	2 cut(s)	377, 770
SatI	GCNGC	2 cut(s)	203, 206
Sau3AI	GATC	3 cut(s)	120, 367, 1043
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	182, 483
SduI	GDGCHC	1 cut(s)	900
SfaNI	GCATC	2 cut(s)	351, 742
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	2 cut(s)	88, 935
SmlI	CTYRAG	2 cut(s)	86, 764
SmoI	CTYRAG	2 cut(s)	86, 764
Sse9I	AATT	4 cut(s)	155, 643, 703, 858
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	2 cut(s)	309, 618
StyD4I	CCNGG	2 cut(s)	180, 481
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	3 cut(s)	134, 494, 658
TaiI	ACGT	2 cut(s)	120, 305
TaqI	TCGA	1 cut(s)	123
TasI	AATT	4 cut(s)	155, 643, 703, 858
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	6 cut(s)	262, 486, 521, 622, 902, 991
Tru1I	TTAA	2 cut(s)	377, 770
Tru9I	TTAA	2 cut(s)	377, 770
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	3 cut(s)	81, 160, 949
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	3 cut(s)	81, 160, 949
TspDTI	ATGAA	6 cut(s)	27, 285, 519, 548, 570, 703
TspRI	CASTG	1 cut(s)	523
Tth111I	GACNNNGTC	1 cut(s)	329
Van91I	CCANNNNNTGG	1 cut(s)	842
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	703
XceI	RCATGY	3 cut(s)	254, 782, 934
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	2 cut(s)	309, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.