Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Reverse (-)

5713113 .. 5713919

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG070100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGATTCTAATGAAGCAAGGGACGTGTTCCAAGCTCAATCTCATGTGTACAAACACATATTCAACTTCGTGAGTTCTATGTCACTCAAGTGTGCAGTTCAGCTCGGCATACCAGATATAATCAAAAGCCATGGCAGAGGCGCCATTACTCTACCGGAGTTGGTCACAGCACTTCAACTTCACCCAGCTAAAACTGGCCATGTGCACCGGCTCATGCGCCTAATGGTACACTCTGGTTTCTTTGCTACAAAACAAGTCTGTATGAATCAAGATGAACAAGAGGAAGAGGCATATGATCTTACACCGTCTTCTAGGCTCCTCCTAAAAGACAAGGTTCCGAGCATGTTACCCATTGTTACAGCAATGCTTGATCCAGCTTTTACAACCCCATGGCAGTTTTTGGGAAAATGGTTCCGTGGGAATGAGCTCACACCGTTTGAGACTGCACATGGGATGGGATTGTGGGAATACGGAGATAAAAATCCTGAGTTCAACAGTCTTTTTAATGAAACAATGGCCAGTGATTCCGGAATGATGAACCTGGTCATCAAAGACTGCAAGCCAATCTTTGAGGGGTTGAGTTCTTTAGTTGATGTAGGAGGCGGTACAGGAACAGTTGCTAGGATCCTTTGTGAGGCTTTCCCGAACTTGAAATGCACAGTTCTTGAACTTCCCCAAGTTGTTGCTAACTTGCCGGATAGTGCGAATTTGAAGTTCATTGCAGGTGATATGTTCAATGCTATTCCTCCAGCTGATGCTATTCTGCTCAAGGTATGCATTTTGTCACTTCTTCTGTTTTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

268

Amino Acids

29.62

Weight (kDa)

5.59

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	18 - 110	1.7e-19	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	131 - 258	8.6e-29	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	713
Acc36I	ACCTGC	1 cut(s)	713
AccB1I	GGYRCC	1 cut(s)	140
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	3 cut(s)	365, 619, 632
AcoI	YGGCCR	2 cut(s)	196, 516
AcsI	RAATTY	1 cut(s)	706
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	3 cut(s)	50, 228, 607
AfiI	CCNNNNNNNGG	1 cut(s)	634
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	7 cut(s)	64, 176, 493, 652, 668, 712, 736
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	540
AleI	CACNNNNGTG	1 cut(s)	88
AluBI	AGCT	6 cut(s)	35, 103, 188, 377, 427, 752
AluI	AGCT	6 cut(s)	35, 103, 188, 377, 427, 752
Alw21I	GWGCWC	2 cut(s)	207, 429
Alw26I	GTCTC	1 cut(s)	434
Alw44I	GTGCAC	1 cut(s)	203
AlwI	GGATC	3 cut(s)	365, 619, 632
Aor13HI	TCCGGA	1 cut(s)	527
AoxI	GGCC	2 cut(s)	196, 516
ApaLI	GTGCAC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	706
AspLEI	GCGC	2 cut(s)	143, 219
AsuHPI	GGTGA	2 cut(s)	173, 737
BaeGI	GKGCMC	1 cut(s)	207
BalI	TGGCCA	2 cut(s)	198, 518
BamHI	GGATCC	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	2 cut(s)	207, 429
BccI	CCATC	1 cut(s)	448
BciT130I	CCWGG	1 cut(s)	542
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	2 cut(s)	312, 621
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	713
Bme1390I	CCNGG	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	25
BmiI	GGNNCC	5 cut(s)	142, 317, 336, 413, 626
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	745
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	732
BpuEI	CTTGAG	2 cut(s)	71, 752
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	130, 389, 415
BsaWI	WCCGGW	2 cut(s)	154, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	199, 519
Bse3DI	GCAATG	2 cut(s)	369, 717
Bse8I	GATNNNNATC	1 cut(s)	480
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	3 cut(s)	130, 389, 415
BseGI	GGATG	1 cut(s)	459
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMI	GCAATG	2 cut(s)	369, 717
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	199, 519
BseRI	GAGGAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	184
BsgI	GTGCAG	2 cut(s)	114, 429
BshFI	GGCC	2 cut(s)	198, 518
BshNI	GGYRCC	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	207, 429
BsiSI	CCGG	4 cut(s)	155, 208, 528, 695
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	198, 518
Bsp1286I	GDGCHC	2 cut(s)	207, 429
Bsp13I	TCCGGA	1 cut(s)	527
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	295, 370, 624
Bsp19I	CCATGG	2 cut(s)	130, 389
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	2 cut(s)	198, 518
BspCNI	CTCAG	1 cut(s)	478
BspEI	TCCGGA	1 cut(s)	527
BspLI	GGNNCC	5 cut(s)	142, 317, 336, 413, 626
BspMI	ACCTGC	1 cut(s)	713
BspPI	GGATC	3 cut(s)	365, 619, 632
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	369, 717
BsrFI	RCCGGY	1 cut(s)	207
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	199, 519
BssAI	RCCGGY	1 cut(s)	207
BssECI	CCNNGG	3 cut(s)	130, 389, 415
BssMI	GATC	3 cut(s)	295, 370, 624
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	2 cut(s)	130, 389
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	5 cut(s)	306, 435, 497, 616, 661
Bst6I	CTCTTC	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	141
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	560
BstDEI	CTNAG	1 cut(s)	486
BstDSI	CCRYGG	3 cut(s)	130, 389, 415
BstENI	CCTNNNNNAGG	1 cut(s)	632
BstF5I	GGATG	1 cut(s)	459
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	143, 219
BstKTI	GATC	3 cut(s)	298, 373, 627
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	3 cut(s)	295, 370, 624
BstNI	CCWGG	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BsuRI	GGCC	2 cut(s)	198, 518
BtgI	CCRYGG	3 cut(s)	130, 389, 415
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	526
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	1 cut(s)	560
CfoI	GCGC	2 cut(s)	143, 219
Cfr10I	RCCGGY	1 cut(s)	207
CsiI	ACCWGGT	1 cut(s)	540
Csp6I	GTAC	3 cut(s)	49, 227, 606
CviAII	CATG	7 cut(s)	44, 131, 200, 214, 343, 390, 449
CviQI	GTAC	3 cut(s)	49, 227, 606
DdeI	CTNAG	1 cut(s)	486
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	3 cut(s)	297, 372, 626
DpnII	GATC	3 cut(s)	295, 370, 624
EaeI	YGGCCR	2 cut(s)	196, 516
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	2 cut(s)	130, 389
Eco24I	GRGCYC	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	427
EcoNI	CCTNNNNNAGG	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	540
EcoT14I	CCWWGG	2 cut(s)	130, 389
EcoT22I	ATGCAT	1 cut(s)	779
EcoT38I	GRGCYC	1 cut(s)	429
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
ErhI	CCWWGG	2 cut(s)	130, 389
FaeI	CATG	7 cut(s)	47, 134, 203, 217, 346, 393, 452
FalI	AAGNNNNNCTT	2 cut(s)	551, 583
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	7 cut(s)	43, 130, 199, 213, 342, 389, 448
FauNDI	CATATG	1 cut(s)	292
FokI	GGATG	1 cut(s)	466
FriOI	GRGCYC	1 cut(s)	429
FspBI	CTAG	2 cut(s)	312, 621
GlaI	GCGC	2 cut(s)	142, 218
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	732
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	198, 518
HapII	CCGG	4 cut(s)	155, 208, 528, 695
HhaI	GCGC	2 cut(s)	143, 219
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	7 cut(s)	47, 134, 203, 217, 346, 393, 452
Hin6I	GCGC	2 cut(s)	141, 217
HinP1I	GCGC	2 cut(s)	141, 217
HinfI	GANTC	3 cut(s)	5, 265, 524
HpaII	CCGG	4 cut(s)	155, 208, 528, 695
HphI	GGTGA	2 cut(s)	173, 737
Hpy166II	GTNNAC	3 cut(s)	49, 205, 229
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	6 cut(s)	70, 269, 485, 528, 643, 665
Hpy8I	GTNNAC	3 cut(s)	49, 205, 229
HpyCH4III	ACNGT	5 cut(s)	306, 435, 497, 616, 661
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	7 cut(s)	95, 205, 446, 558, 657, 722, 777
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	7 cut(s)	47, 134, 203, 217, 346, 393, 452
HspAI	GCGC	2 cut(s)	141, 217
KasI	GGCGCC	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	527
Kzo9I	GATC	3 cut(s)	295, 370, 624
LmnI	GCTCC	1 cut(s)	321
LweI	GCATC	1 cut(s)	745
MabI	ACCWGGT	1 cut(s)	540
MaeI	CTAG	2 cut(s)	312, 621
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	5 cut(s)	81, 163, 345, 355, 783
MalI	GATC	3 cut(s)	297, 372, 626
MboI	GATC	3 cut(s)	295, 370, 624
MboII	GAAGA	3 cut(s)	296, 300, 782
MflI	RGATCY	1 cut(s)	624
MhlI	GDGCHC	2 cut(s)	207, 429
MlsI	TGGCCA	2 cut(s)	198, 518
MluCI	AATT	1 cut(s)	706
MluNI	TGGCCA	2 cut(s)	198, 518
Mly113I	GGCGCC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	131, 274, 280, 329, 565, 593, 628, 756
Mox20I	TGGCCA	2 cut(s)	198, 518
Mph1103I	ATGCAT	1 cut(s)	779
MroI	TCCGGA	1 cut(s)	527
MscI	TGGCCA	2 cut(s)	198, 518
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	88
Msp20I	TGGCCA	2 cut(s)	198, 518
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	4 cut(s)	155, 208, 528, 695
MspR9I	CCNGG	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	542
NarI	GGCGCC	1 cut(s)	141
NcoI	CCATGG	2 cut(s)	130, 389
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	3 cut(s)	295, 370, 624
NlaIII	CATG	7 cut(s)	47, 134, 203, 217, 346, 393, 452
NlaIV	GGNNCC	5 cut(s)	142, 317, 336, 413, 626
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	3 cut(s)	81, 163, 783
NsiI	ATGCAT	1 cut(s)	779
NspI	RCATGY	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	713
PfeI	GAWTC	3 cut(s)	5, 265, 524
PluTI	GGCGCC	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	540
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	5 cut(s)	142, 317, 336, 413, 626
PsuI	RGATCY	1 cut(s)	624
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	3 cut(s)	50, 228, 607
RsaNI	GTAC	3 cut(s)	49, 227, 606
RseI	CAYNNNNRTG	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	504
Sau3AI	GATC	3 cut(s)	295, 370, 624
ScrFI	CCNGG	1 cut(s)	542
SduI	GDGCHC	2 cut(s)	207, 429
SexAI	ACCWGGT	1 cut(s)	540
SfaNI	GCATC	1 cut(s)	745
SfoI	GGCGCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	88
SmlI	CTYRAG	2 cut(s)	86, 767
SmoI	CTYRAG	2 cut(s)	86, 767
Sse9I	AATT	1 cut(s)	706
SsiI	CCGC	1 cut(s)	603
SspDI	GGCGCC	1 cut(s)	140
SspMI	CTAG	2 cut(s)	312, 621
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	540
StyI	CCWWGG	2 cut(s)	130, 389
TaaI	ACNGT	5 cut(s)	306, 435, 497, 616, 661
TaiI	ACGT	1 cut(s)	27
TasI	AATT	1 cut(s)	706
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	3 cut(s)	5, 265, 524
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	3 cut(s)	81, 163, 783
Tsp45I	GTSAC	3 cut(s)	81, 163, 783
TspDTI	ATGAA	6 cut(s)	27, 278, 288, 522, 551, 706
TspGWI	ACGGA	2 cut(s)	404, 486
TspRI	CASTG	1 cut(s)	526
VneI	GTGCAC	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	632
XapI	RAATTY	1 cut(s)	706
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	2 cut(s)	312, 621
Zsp2I	ATGCAT	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.