Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Reverse (-)

7102320 .. 7104040

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGATTCTAATGAAGCAAAGGACTTGTTCCAAGCTCAATCTCATGTGTACAAACACATATTCAACTTCGTGAGTTCTATGTCACTCAAGTGTGCAGTTCAGCTAGGCATACCAGACGTAATTAACAGCCATGGCCAAGCCATTACTCTACAGGAATTGGTCACAGCACTTCAGCTTCACCCGGCTAAATCTGGCTACGTGCGGCGGCTCATGCGTCTAATGGTACACTCTGGCTTCTTTGCTACGAAAAAAGTCTGTAAGAATCAAGATGAACAAGAGGAAGAGGCCTATGATCTTACACCGTCTTCTAGGCTCCTCCTGAAAAACAAGGTCCCGAGTTTGTTACCGTTTGCTCTGGGGATGTTTGAACCAGCTTTTGCGACCCCATGGCAGTTTTTGGGAAATTGGTTCCGAGGGAACGAGCTCACACCCTTTGAGACTGCACATGGGATGGGATTTTGGGAATACGGAGACAAAAACCCTGAATTCAACAGTGTTTTCAATGAAGCAATGGCCAGTGATTCCGGAATGATGAACTTGGTCATCAAAGACTGCAAGCCAATCTTTGAGGGGTTGACTTCTTTAGTTGATGTTGGAGGTGGTACTGGAAAAGTTGCTAGGATCCTTTGTGAGGCTTTCCCCAGCTTGAATTGCACAGTTCTTGAGCTTCCACAAGTTGTTGCTGGCTTGCCGGATAGTGCAAATTTGAAGTTCATTGCAGGTGATATGTTCAATGCTATTCCTCCAGCTGATGCTATCCTGCTCAAGTTGACTTTACATGCTTTGAACGACGAGGAATGCTTGAAGGTTTTGAAGAAATGCAGGGAAGCTATTCCAGGCAATGGCCAAGGAAAGGTTATTATCATAGACATTGTGATAAACGAGGAGAAAGAAGAGCACGAAACAACTGAAGCAAAGCTCTTCTTTGACATGTTGATGATGGTTGTGGTGACCGGAAGAGAGAGAAGTGAGAAAGAGTGGGAAAAGCTCTTTCTGGAGGCTGGTTTCAGCAAATACAAGATAACACCCATCTTTGGTTTAAGGTCCATTATTGAAGTTTATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

355

Amino Acids

39.65

Weight (kDa)

5.4

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	18 - 108	4.3e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	130 - 337	1.3e-51	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	710
Acc36I	ACCTGC	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	842
AccIII	TCCGGA	1 cut(s)	524
AciI	CCGC	2 cut(s)	202, 205
AclWI	GGATC	2 cut(s)	616, 629
AcoI	YGGCCR	3 cut(s)	133, 513, 844
AcsI	RAATTY	2 cut(s)	485, 703
AcuI	CTGAAG	2 cut(s)	155, 930
AfaI	GTAC	3 cut(s)	50, 225, 604
AfiI	CCNNNNNNNGG	4 cut(s)	631, 842, 853, 1034
AflIII	ACRYGT	1 cut(s)	930
AjnI	CCWGG	1 cut(s)	835
AleI	CACNNNNGTG	1 cut(s)	88
Alw21I	GWGCWC	2 cut(s)	426, 900
Alw26I	GTCTC	2 cut(s)	431, 465
AlwI	GGATC	2 cut(s)	616, 629
Ama87I	CYCGRG	1 cut(s)	334
Aor13HI	TCCGGA	1 cut(s)	524
AoxI	GGCC	4 cut(s)	133, 285, 513, 844
ApoI	RAATTY	2 cut(s)	485, 703
Asp700I	GAANNNNTTC	1 cut(s)	831
AspS9I	GGNCC	2 cut(s)	331, 1044
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	170, 734, 961
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	2 cut(s)	331, 1044
BalI	TGGCCA	3 cut(s)	135, 515, 846
BamHI	GGATCC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	426, 900
BccI	CCATC	3 cut(s)	445, 934, 1037
BciT130I	CCWGG	1 cut(s)	837
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	431, 465
BfaI	CTAG	3 cut(s)	104, 309, 618
BfmI	CTRYAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	710
BisI	GCNGC	2 cut(s)	203, 206
BlsI	GCNGC	2 cut(s)	204, 207
Bme1390I	CCNGG	2 cut(s)	182, 837
Bme18I	GGWCC	2 cut(s)	331, 1044
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	331, 1044
BmiI	GGNNCC	4 cut(s)	314, 333, 410, 623
BmrFI	CCNGG	2 cut(s)	182, 837
BmsI	GCATC	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	2 cut(s)	729, 1016
BpuEI	CTTGAG	3 cut(s)	71, 683, 749
BpuMI	CCSGG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	199
BsaJI	CCNNGG	4 cut(s)	130, 386, 412, 847
BsaWI	WCCGGW	2 cut(s)	524, 953
Bsc4I	CCNNNNNNNGG	4 cut(s)	631, 842, 853, 1034
Bse1I	ACTGG	2 cut(s)	516, 610
Bse3DI	GCAATG	3 cut(s)	516, 714, 847
BseAI	TCCGGA	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	837
BseDI	CCNNGG	4 cut(s)	130, 386, 412, 847
BseGI	GGATG	2 cut(s)	366, 456
BseLI	CCNNNNNNNGG	4 cut(s)	631, 842, 853, 1034
BseMI	GCAATG	3 cut(s)	516, 714, 847
BseNI	ACTGG	2 cut(s)	516, 610
BseRI	GAGGAG	2 cut(s)	305, 899
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	2 cut(s)	114, 426
BshFI	GGCC	4 cut(s)	135, 287, 515, 846
BsiHKAI	GWGCWC	2 cut(s)	426, 900
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	4 cut(s)	182, 525, 692, 954
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	4 cut(s)	631, 842, 853, 1034
BsmAI	GTCTC	2 cut(s)	431, 465
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	4 cut(s)	135, 287, 515, 846
BsoBI	CYCGRG	1 cut(s)	334
Bsp1286I	GDGCHC	2 cut(s)	426, 900
Bsp13I	TCCGGA	1 cut(s)	524
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	292, 621
Bsp19I	CCATGG	2 cut(s)	130, 386
BspACI	CCGC	2 cut(s)	202, 205
BspANI	GGCC	4 cut(s)	135, 287, 515, 846
BspEI	TCCGGA	1 cut(s)	524
BspLI	GGNNCC	4 cut(s)	314, 333, 410, 623
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	2 cut(s)	616, 629
BspQI	GCTCTTC	2 cut(s)	888, 926
BsrDI	GCAATG	3 cut(s)	516, 714, 847
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	516, 610
BssECI	CCNNGG	4 cut(s)	130, 386, 412, 847
BssMI	GATC	2 cut(s)	292, 621
BssT1I	CCWWGG	3 cut(s)	130, 386, 847
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	4 cut(s)	303, 348, 494, 658
Bst6I	CTCTTC	4 cut(s)	276, 888, 926, 952
BstAUI	TGTACA	1 cut(s)	48
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	557, 685, 689
BstDEI	CTNAG	1 cut(s)	1065
BstDSI	CCRYGG	2 cut(s)	130, 386
BstEII	GGTNACC	1 cut(s)	949
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstF5I	GGATG	2 cut(s)	366, 456
BstKTI	GATC	2 cut(s)	295, 624
BstMAI	GTCTC	2 cut(s)	431, 465
BstMBI	GATC	2 cut(s)	292, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 651
BstNI	CCWGG	1 cut(s)	837
BstNSI	RCATGY	2 cut(s)	782, 934
BstPI	GGTNACC	1 cut(s)	949
BstSCI	CCNGG	2 cut(s)	180, 835
BstSFI	CTRYAG	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
BsuRI	GGCC	4 cut(s)	135, 287, 515, 846
BtgI	CCRYGG	2 cut(s)	130, 386
BtsCI	GGATG	2 cut(s)	366, 456
BtsIMutI	CAGTG	2 cut(s)	499, 523
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	3 cut(s)	557, 685, 689
Cfr13I	GGNCC	2 cut(s)	331, 1044
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	3 cut(s)	49, 224, 603
CviAII	CATG	7 cut(s)	44, 131, 211, 387, 446, 779, 931
CviQI	GTAC	3 cut(s)	49, 224, 603
DdeI	CTNAG	1 cut(s)	1065
DpnI	GATC	2 cut(s)	294, 623
DpnII	GATC	2 cut(s)	292, 621
EaeI	YGGCCR	3 cut(s)	133, 513, 844
Eam1104I	CTCTTC	4 cut(s)	276, 888, 926, 952
EarI	CTCTTC	4 cut(s)	276, 888, 926, 952
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	3 cut(s)	130, 386, 847
Eco147I	AGGCCT	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	331, 1044
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	2 cut(s)	155, 930
Eco88I	CYCGRG	1 cut(s)	334
Eco91I	GGTNACC	1 cut(s)	949
EcoICRI	GAGCTC	1 cut(s)	424
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoO109I	RGGNCCY	1 cut(s)	331
EcoO65I	GGTNACC	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	835
EcoT14I	CCWWGG	3 cut(s)	130, 386, 847
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	3 cut(s)	130, 386, 847
FaeI	CATG	7 cut(s)	47, 134, 214, 390, 449, 782, 934
FalI	AAGNNNNNCTT	4 cut(s)	548, 580, 908, 940
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	7 cut(s)	43, 130, 210, 386, 445, 778, 930
Fnu4HI	GCNGC	2 cut(s)	203, 206
FokI	GGATG	2 cut(s)	373, 463
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	2 cut(s)	203, 206
FspBI	CTAG	3 cut(s)	104, 309, 618
GluI	GCNGC	2 cut(s)	203, 206
GsaI	CCCAGC	1 cut(s)	645
GsuI	CTGGAG	2 cut(s)	729, 1016
HaeIII	GGCC	4 cut(s)	135, 287, 515, 846
HapII	CCGG	4 cut(s)	182, 525, 692, 954
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	7 cut(s)	47, 134, 214, 390, 449, 782, 934
HincII	GTYRAC	2 cut(s)	576, 771
HindII	GTYRAC	2 cut(s)	576, 771
HinfI	GANTC	3 cut(s)	5, 262, 521
HpaII	CCGG	4 cut(s)	182, 525, 692, 954
HphI	GGTGA	3 cut(s)	170, 734, 961
Hpy166II	GTNNAC	4 cut(s)	49, 226, 576, 771
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	7 cut(s)	70, 266, 319, 334, 525, 662, 995
Hpy8I	GTNNAC	4 cut(s)	49, 226, 576, 771
Hpy99I	CGWCG	1 cut(s)	794
HpyAV	CCTTC	1 cut(s)	799
HpyCH4III	ACNGT	4 cut(s)	303, 348, 494, 658
HpyCH4IV	ACGT	2 cut(s)	117, 198
HpyCH4V	TGCA	7 cut(s)	95, 443, 555, 654, 701, 719, 822
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 651
HpyF3I	CTNAG	1 cut(s)	1065
HpySE526I	ACGT	2 cut(s)	117, 198
Hsp92II	CATG	7 cut(s)	47, 134, 214, 390, 449, 782, 934
Kpn2I	TCCGGA	1 cut(s)	524
Kzo9I	GATC	2 cut(s)	292, 621
LguI	GCTCTTC	2 cut(s)	888, 926
LmnI	GCTCC	1 cut(s)	318
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	3 cut(s)	104, 309, 618
MaeII	ACGT	2 cut(s)	117, 198
MaeIII	GTNAC	4 cut(s)	81, 160, 342, 949
MalI	GATC	2 cut(s)	294, 623
MboI	GATC	2 cut(s)	292, 621
MboII	GAAGA	6 cut(s)	293, 297, 826, 905, 913, 969
MflI	RGATCY	1 cut(s)	621
MhlI	GDGCHC	2 cut(s)	426, 900
MlsI	TGGCCA	3 cut(s)	135, 515, 846
MluCI	AATT	6 cut(s)	120, 155, 403, 485, 649, 703
MluNI	TGGCCA	3 cut(s)	135, 515, 846
MmeI	TCCRAC	1 cut(s)	574
Mox20I	TGGCCA	3 cut(s)	135, 515, 846
MroI	TCCGGA	1 cut(s)	524
MroXI	GAANNNNTTC	1 cut(s)	831
MscI	TGGCCA	3 cut(s)	135, 515, 846
MseI	TTAA	2 cut(s)	123, 1040
MslI	CAYNNNNRTG	2 cut(s)	88, 935
Msp20I	TGGCCA	3 cut(s)	135, 515, 846
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	4 cut(s)	182, 525, 692, 954
MspR9I	CCNGG	2 cut(s)	182, 837
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	1 cut(s)	837
MwoI	GCNNNNNNNGC	2 cut(s)	211, 651
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	2 cut(s)	130, 386
NdeII	GATC	2 cut(s)	292, 621
NlaIII	CATG	7 cut(s)	47, 134, 214, 390, 449, 782, 934
NlaIV	GGNNCC	4 cut(s)	314, 333, 410, 623
NmuCI	GTSAC	3 cut(s)	81, 160, 949
NspI	RCATGY	2 cut(s)	782, 934
OliI	CACNNNNGTG	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	710
PceI	AGGCCT	1 cut(s)	287
PciI	ACATGT	1 cut(s)	930
PciSI	GCTCTTC	2 cut(s)	888, 926
PctI	GAATGC	1 cut(s)	803
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	3 cut(s)	5, 262, 521
PflMI	CCANNNNNTGG	1 cut(s)	842
PkrI	GCNGC	2 cut(s)	204, 207
Ppu21I	YACGTR	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	331
PscI	ACATGT	1 cut(s)	930
Psp124BI	GAGCTC	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	835
PspEI	GGTNACC	1 cut(s)	949
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	4 cut(s)	314, 333, 410, 623
PspPI	GGNCC	2 cut(s)	331, 1044
PspPPI	RGGWCCY	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	621
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	3 cut(s)	50, 225, 604
RsaNI	GTAC	3 cut(s)	49, 224, 603
RseI	CAYNNNNRTG	2 cut(s)	88, 935
SacI	GAGCTC	1 cut(s)	426
SapI	GCTCTTC	2 cut(s)	888, 926
SaqAI	TTAA	2 cut(s)	123, 1040
SatI	GCNGC	2 cut(s)	203, 206
Sau3AI	GATC	2 cut(s)	292, 621
Sau96I	GGNCC	2 cut(s)	331, 1044
ScrFI	CCNGG	2 cut(s)	182, 837
SduI	GDGCHC	2 cut(s)	426, 900
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	1 cut(s)	149
SinI	GGWCC	2 cut(s)	331, 1044
SmiMI	CAYNNNNRTG	2 cut(s)	88, 935
SmlI	CTYRAG	3 cut(s)	86, 662, 764
SmoI	CTYRAG	3 cut(s)	86, 662, 764
Sse9I	AATT	6 cut(s)	120, 155, 403, 485, 649, 703
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	202, 205
SspMI	CTAG	3 cut(s)	104, 309, 618
SstI	GAGCTC	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	180, 835
StyI	CCWWGG	3 cut(s)	130, 386, 847
TaaI	ACNGT	4 cut(s)	303, 348, 494, 658
TaiI	ACGT	2 cut(s)	120, 201
TasI	AATT	6 cut(s)	120, 155, 403, 485, 649, 703
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	205, 208
TfiI	GAWTC	3 cut(s)	5, 262, 521
Tru1I	TTAA	2 cut(s)	123, 1040
Tru9I	TTAA	2 cut(s)	123, 1040
TscAI	CASTG	2 cut(s)	499, 523
TseFI	GTSAC	3 cut(s)	81, 160, 949
Tsp45I	GTSAC	3 cut(s)	81, 160, 949
TspDTI	ATGAA	5 cut(s)	27, 285, 519, 548, 703
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	2 cut(s)	499, 523
Van91I	CCANNNNNTGG	1 cut(s)	842
VpaK11BI	GGWCC	2 cut(s)	331, 1044
XagI	CCTNNNNNAGG	1 cut(s)	629
XapI	RAATTY	2 cut(s)	485, 703
XceI	RCATGY	2 cut(s)	782, 934
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	3 cut(s)	104, 309, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.