Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Reverse (-)

6343303 .. 6345005

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG082600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGATTCTAATGAAGCAAAGGACTTGTTCCAAGCTCAATCTCATGTGTACAAACACATATTCAACTTCGTGAGTTCTATGTCACTCAAGTGTGCAGTTCAGCTAGGCATACCAGACGTAATTAACAGCCATGGCCAAGCCATTACTCTACAGGAATTGGTCACAGCACTTCAGCTTCACCCAGCTAAATCTGGCTACGTGCGGCGGCTCATGCGTCTAATGGTACACTCTGGCTTCTTTGCTACGAAAAAAGTCTGTAAGAATCAAGATGAACAAGAGGAAGAGGCCTATGATCTTACACCGTCTTCCAGGCTCCTCCTGAAAAACAAGGTCCCGAGTTTGTTACCGTTTGCTCTGGGGATGTTTGAACCAGCTTTTGCAACCCCATGGCAGTTTTTGGGAAATTGGTTCCGAGGGAACGAGCTCACACCCTTTGAGACTGCACATGGGATGGGATTTTGGGAATACGGAGACAAAAACCCTGAATTCAACAGTGTTTTCAATGAAGCAATGGCCAGTGATTCCGGAATGATGAACTTGGTCATCAAAGACTGCAAGCCAATCTTTGAGGGGTTGACTTCTTTGGTTGATGTAGGAGGTGGTACTGGAAAAGTTGCCAGGATCCTTTGTGAGGCTTTCCCCAGCTTGAATTGCACAGTTCTTGAGCTTCCACAAGTTGTTGCTGGCTTGCCGGATAGTGCGAATTTGAAGTTCATTGCAGGTGATATGTTCAATGCTATTCCTCCAGCTGATGCTATCCTGCTCAAGATCAAGTTTGACAGTCGAAAACAGATTAGACATGCAAATAAGGCTCTACCTGTGGAGCATTTATTCAAACAGGTCATGTTTGATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

285

Amino Acids

31.69

Weight (kDa)

6.24

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	18 - 108	2.8e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	130 - 259	1.2e-27	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	710
Acc36I	ACCTGC	1 cut(s)	710
AccIII	TCCGGA	1 cut(s)	524
AciI	CCGC	2 cut(s)	202, 205
AclWI	GGATC	2 cut(s)	616, 629
AcoI	YGGCCR	2 cut(s)	133, 513
AcsI	RAATTY	2 cut(s)	485, 703
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	3 cut(s)	50, 225, 604
AfiI	CCNNNNNNNGG	1 cut(s)	631
AgsI	TTSAA	8 cut(s)	64, 368, 490, 502, 649, 709, 733, 835
AjnI	CCWGG	2 cut(s)	308, 617
AleI	CACNNNNGTG	1 cut(s)	88
AluBI	AGCT	9 cut(s)	35, 103, 175, 185, 374, 424, 645, 667, 749
AluI	AGCT	9 cut(s)	35, 103, 175, 185, 374, 424, 645, 667, 749
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	2 cut(s)	431, 465
AlwI	GGATC	2 cut(s)	616, 629
Ama87I	CYCGRG	1 cut(s)	334
Aor13HI	TCCGGA	1 cut(s)	524
AoxI	GGCC	3 cut(s)	133, 285, 513
ApoI	RAATTY	2 cut(s)	485, 703
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	170, 734
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	331
BalI	TGGCCA	2 cut(s)	135, 515
BamHI	GGATCC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	426
BccI	CCATC	1 cut(s)	445
BciT130I	CCWGG	2 cut(s)	310, 619
BcoDI	GTCTC	2 cut(s)	431, 465
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	710
BisI	GCNGC	2 cut(s)	203, 206
BlsI	GCNGC	2 cut(s)	204, 207
Bme1390I	CCNGG	2 cut(s)	310, 619
Bme18I	GGWCC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	4 cut(s)	314, 333, 410, 623
BmrFI	CCNGG	2 cut(s)	310, 619
BmsI	GCATC	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	729
BpuEI	CTTGAG	3 cut(s)	71, 683, 749
BsaAI	YACGTR	1 cut(s)	199
BsaJI	CCNNGG	3 cut(s)	130, 386, 412
BsaWI	WCCGGW	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse1I	ACTGG	2 cut(s)	516, 610
Bse3DI	GCAATG	2 cut(s)	516, 714
BseAI	TCCGGA	1 cut(s)	524
BseBI	CCWGG	2 cut(s)	310, 619
BseDI	CCNNGG	3 cut(s)	130, 386, 412
BseGI	GGATG	2 cut(s)	366, 456
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMI	GCAATG	2 cut(s)	516, 714
BseNI	ACTGG	2 cut(s)	516, 610
BseRI	GAGGAG	1 cut(s)	305
BseYI	CCCAGC	2 cut(s)	181, 641
BsgI	GTGCAG	2 cut(s)	114, 426
BshFI	GGCC	3 cut(s)	135, 287, 515
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	525, 692
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	2 cut(s)	431, 465
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	135, 287, 515
BsoBI	CYCGRG	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp13I	TCCGGA	1 cut(s)	524
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	292, 621, 768
Bsp19I	CCATGG	2 cut(s)	130, 386
BspACI	CCGC	2 cut(s)	202, 205
BspANI	GGCC	3 cut(s)	135, 287, 515
BspEI	TCCGGA	1 cut(s)	524
BspLI	GGNNCC	4 cut(s)	314, 333, 410, 623
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	2 cut(s)	616, 629
BsrDI	GCAATG	2 cut(s)	516, 714
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	516, 610
BssECI	CCNNGG	3 cut(s)	130, 386, 412
BssMI	GATC	3 cut(s)	292, 621, 768
BssT1I	CCWWGG	2 cut(s)	130, 386
Bst2UI	CCWGG	2 cut(s)	310, 619
Bst4CI	ACNGT	5 cut(s)	303, 348, 494, 658, 782
Bst6I	CTCTTC	1 cut(s)	276
BstAUI	TGTACA	1 cut(s)	48
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	557, 685, 689
BstDSI	CCRYGG	2 cut(s)	130, 386
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstF5I	GGATG	2 cut(s)	366, 456
BstKTI	GATC	3 cut(s)	295, 624, 771
BstMAI	GTCTC	2 cut(s)	431, 465
BstMBI	GATC	3 cut(s)	292, 621, 768
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 651, 809
BstNI	CCWGG	2 cut(s)	310, 619
BstNSI	RCATGY	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	308, 617
BstSFI	CTRYAG	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
BsuRI	GGCC	3 cut(s)	135, 287, 515
BtgI	CCRYGG	2 cut(s)	130, 386
BtsCI	GGATG	2 cut(s)	366, 456
BtsIMutI	CAGTG	2 cut(s)	499, 523
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	3 cut(s)	557, 685, 689
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	3 cut(s)	49, 224, 603
CviAII	CATG	7 cut(s)	44, 131, 211, 387, 446, 800, 844
CviQI	GTAC	3 cut(s)	49, 224, 603
DpnI	GATC	3 cut(s)	294, 623, 770
DpnII	GATC	3 cut(s)	292, 621, 768
EaeI	YGGCCR	2 cut(s)	133, 513
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	130, 386
Eco147I	AGGCCT	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	424
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	308, 617
EcoT14I	CCWWGG	2 cut(s)	130, 386
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	130, 386
FaeI	CATG	7 cut(s)	47, 134, 214, 390, 449, 803, 847
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	7 cut(s)	43, 130, 210, 386, 445, 799, 843
Fnu4HI	GCNGC	2 cut(s)	203, 206
FokI	GGATG	2 cut(s)	373, 463
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	2 cut(s)	203, 206
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	2 cut(s)	203, 206
GsaI	CCCAGC	2 cut(s)	185, 645
GsuI	CTGGAG	1 cut(s)	729
HaeIII	GGCC	3 cut(s)	135, 287, 515
HapII	CCGG	2 cut(s)	525, 692
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	7 cut(s)	47, 134, 214, 390, 449, 803, 847
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	4 cut(s)	5, 262, 521, 851
HpaII	CCGG	2 cut(s)	525, 692
HphI	GGTGA	2 cut(s)	170, 734
Hpy166II	GTNNAC	3 cut(s)	49, 226, 576
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	7 cut(s)	70, 266, 319, 334, 525, 662, 766
Hpy8I	GTNNAC	3 cut(s)	49, 226, 576
HpyCH4III	ACNGT	5 cut(s)	303, 348, 494, 658, 782
HpyCH4IV	ACGT	2 cut(s)	117, 198
HpyCH4V	TGCA	7 cut(s)	95, 380, 443, 555, 654, 719, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 651, 809
HpySE526I	ACGT	2 cut(s)	117, 198
Hsp92II	CATG	7 cut(s)	47, 134, 214, 390, 449, 803, 847
Kpn2I	TCCGGA	1 cut(s)	524
Kzo9I	GATC	3 cut(s)	292, 621, 768
LmnI	GCTCC	2 cut(s)	318, 823
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	2 cut(s)	117, 198
MaeIII	GTNAC	3 cut(s)	81, 160, 342
MalI	GATC	3 cut(s)	294, 623, 770
MboI	GATC	3 cut(s)	292, 621, 768
MboII	GAAGA	2 cut(s)	293, 297
MflI	RGATCY	1 cut(s)	621
MhlI	GDGCHC	1 cut(s)	426
MlsI	TGGCCA	2 cut(s)	135, 515
MluCI	AATT	6 cut(s)	120, 155, 403, 485, 649, 703
MluNI	TGGCCA	2 cut(s)	135, 515
MnlI	CCTC	8 cut(s)	271, 277, 326, 407, 562, 590, 625, 753
Mox20I	TGGCCA	2 cut(s)	135, 515
MroI	TCCGGA	1 cut(s)	524
MscI	TGGCCA	2 cut(s)	135, 515
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	88
Msp20I	TGGCCA	2 cut(s)	135, 515
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	2 cut(s)	525, 692
MspR9I	CCNGG	2 cut(s)	310, 619
MvaI	CCWGG	2 cut(s)	310, 619
MwoI	GCNNNNNNNGC	3 cut(s)	211, 651, 809
NcoI	CCATGG	2 cut(s)	130, 386
NdeII	GATC	3 cut(s)	292, 621, 768
NlaIII	CATG	7 cut(s)	47, 134, 214, 390, 449, 803, 847
NlaIV	GGNNCC	4 cut(s)	314, 333, 410, 623
NmuCI	GTSAC	2 cut(s)	81, 160
NspI	RCATGY	1 cut(s)	803
OliI	CACNNNNGTG	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	710
PceI	AGGCCT	1 cut(s)	287
PfeI	GAWTC	4 cut(s)	5, 262, 521, 851
PkrI	GCNGC	2 cut(s)	204, 207
Ppu21I	YACGTR	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	308, 617
PspFI	CCCAGC	2 cut(s)	181, 641
PspGI	CCWGG	2 cut(s)	308, 617
PspN4I	GGNNCC	4 cut(s)	314, 333, 410, 623
PspPI	GGNCC	1 cut(s)	331
PspPPI	RGGWCCY	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	621
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	3 cut(s)	50, 225, 604
RsaNI	GTAC	3 cut(s)	49, 224, 603
RseI	CAYNNNNRTG	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	203, 206
Sau3AI	GATC	3 cut(s)	292, 621, 768
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	2 cut(s)	310, 619
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	88
SmlI	CTYRAG	3 cut(s)	86, 662, 764
SmoI	CTYRAG	3 cut(s)	86, 662, 764
Sse9I	AATT	6 cut(s)	120, 155, 403, 485, 649, 703
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	202, 205
SspMI	CTAG	1 cut(s)	104
SstI	GAGCTC	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	308, 617
StyI	CCWWGG	2 cut(s)	130, 386
TaaI	ACNGT	5 cut(s)	303, 348, 494, 658, 782
TaiI	ACGT	2 cut(s)	120, 201
TaqI	TCGA	1 cut(s)	784
TasI	AATT	6 cut(s)	120, 155, 403, 485, 649, 703
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	205, 208
TfiI	GAWTC	4 cut(s)	5, 262, 521, 851
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	499, 523
TseFI	GTSAC	2 cut(s)	81, 160
Tsp45I	GTSAC	2 cut(s)	81, 160
TspDTI	ATGAA	5 cut(s)	27, 285, 519, 548, 703
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	2 cut(s)	499, 523
VpaK11BI	GGWCC	1 cut(s)	331
XagI	CCTNNNNNAGG	1 cut(s)	629
XapI	RAATTY	2 cut(s)	485, 703
XceI	RCATGY	1 cut(s)	803
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.