Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Reverse (-)

6338294 .. 6339106

Gene Structure 813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG082500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGATTCTAATGAAGCAAGGGACGTGTTCCAAGCTCAATCTCATGTGTATAAACACATATTCAACTTCGTGAGTTCTATGTCACTTAAGTGTGCAGTTCAGCTCGGCATACCAGATATAATCAACAGCCATGGCAGAGCCATTACTCTACCGGAGTTGGTCACAGCACTTCAACTTCACCCAGCTAAAACTGGCCATGTGCACCGGCTCATGCGCCTAATGGTACACTCTGGTTTCTTTGCTACAAAACAAGTCTGTATGAATCAAGATGAACAAGAGGAAGAGGCATATGATCTTACACCGTCTTCTAGGCTCCTCCTAAAAGACAAGGTTCCGAGCATGTTACCCATTGTTACAGCAATGCTTGATCCAGCTTTTACAACCCCATGGCAGTTTTTGGGAAAATGGTTCTGTGGGAATGAGCTCACACCATTTGAGACTGCACATGGGATGGGATTGTGGGAATACGGGGATAAAAATCCTGAGTTCAACAATCTTTTTAATGAAACAATGGCCAGTGATTCCGGAATGATGAACCTGGTCATCAAAGACTGCAAGCCAATCTTTGAGGGGTTGAGTTCTTTAGTTGACGTAGGAGGCGGTACAGGAACAGTTGCTAGGATCCTTTGTGAGGCTTTCCCCAACTTGAAATGCACAGTTCTTGAACTTCCACAAGTTGTTGCTAACTTGCCGGATAGTGCGAATTTGAAGTTCATTGCAGGTGATATGTTCAATGCTATTCCTCCAGCTGATGCTATCCTGCTCAAGGTATGCAATTTGTCACTTCTACTTCTGATTTTTGTTGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

270

Amino Acids

29.79

Weight (kDa)

5.45

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	18 - 109	3.2e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	130 - 256	4e-28	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	710
Acc36I	ACCTGC	1 cut(s)	710
AccIII	TCCGGA	1 cut(s)	524
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	3 cut(s)	362, 616, 629
AcoI	YGGCCR	2 cut(s)	193, 513
AcsI	RAATTY	1 cut(s)	703
AfaI	GTAC	2 cut(s)	225, 604
AfiI	CCNNNNNNNGG	2 cut(s)	631, 766
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	7 cut(s)	64, 173, 490, 649, 665, 709, 733
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	537
AleI	CACNNNNGTG	1 cut(s)	88
AluBI	AGCT	6 cut(s)	35, 103, 185, 374, 424, 749
AluI	AGCT	6 cut(s)	35, 103, 185, 374, 424, 749
Alw21I	GWGCWC	2 cut(s)	204, 426
Alw26I	GTCTC	1 cut(s)	431
Alw44I	GTGCAC	1 cut(s)	200
AlwI	GGATC	3 cut(s)	362, 616, 629
Aor13HI	TCCGGA	1 cut(s)	524
AoxI	GGCC	2 cut(s)	193, 513
ApaLI	GTGCAC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	703
AspLEI	GCGC	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	170, 734
BaeGI	GKGCMC	1 cut(s)	204
BalI	TGGCCA	2 cut(s)	195, 515
BamHI	GGATCC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	204, 426
BccI	CCATC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	539
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	309, 618
BfrI	CTTAAG	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	710
Bme1390I	CCNGG	1 cut(s)	539
BmgBI	CACGTC	1 cut(s)	25
BmiI	GGNNCC	3 cut(s)	314, 333, 623
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	729
BpuEI	CTTGAG	1 cut(s)	749
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	130, 386
BsaWI	WCCGGW	2 cut(s)	151, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 766
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	2 cut(s)	196, 516
Bse3DI	GCAATG	2 cut(s)	366, 714
Bse8I	GATNNNNATC	1 cut(s)	477
BseAI	TCCGGA	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	130, 386
BseGI	GGATG	1 cut(s)	456
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	631, 766
BseMI	GCAATG	2 cut(s)	366, 714
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	2 cut(s)	196, 516
BseRI	GAGGAG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	204
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	2 cut(s)	114, 426
BshFI	GGCC	2 cut(s)	195, 515
BsiHKAI	GWGCWC	2 cut(s)	204, 426
BsiSI	CCGG	4 cut(s)	152, 205, 525, 692
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	631, 766
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	195, 515
Bsp1286I	GDGCHC	2 cut(s)	204, 426
Bsp13I	TCCGGA	1 cut(s)	524
Bsp143I	GATC	3 cut(s)	292, 367, 621
Bsp19I	CCATGG	2 cut(s)	130, 386
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	2 cut(s)	195, 515
BspCNI	CTCAG	1 cut(s)	475
BspEI	TCCGGA	1 cut(s)	524
BspLI	GGNNCC	3 cut(s)	314, 333, 623
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	3 cut(s)	362, 616, 629
BspTI	CTTAAG	1 cut(s)	86
BsrDI	GCAATG	2 cut(s)	366, 714
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	196, 516
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	130, 386
BssMI	GATC	3 cut(s)	292, 367, 621
BssT1I	CCWWGG	2 cut(s)	130, 386
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	3 cut(s)	303, 613, 658
Bst6I	CTCTTC	1 cut(s)	276
BstAFI	CTTAAG	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	2 cut(s)	130, 386
BstENI	CCTNNNNNAGG	2 cut(s)	629, 764
BstF5I	GGATG	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	3 cut(s)	295, 370, 624
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	3 cut(s)	292, 367, 621
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	195, 515
BtgI	CCRYGG	2 cut(s)	130, 386
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	523
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	1 cut(s)	557
CfoI	GCGC	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	204
CsiI	ACCWGGT	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	224, 603
CviAII	CATG	7 cut(s)	44, 131, 197, 211, 340, 387, 446
CviQI	GTAC	2 cut(s)	224, 603
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	3 cut(s)	294, 369, 623
DpnII	GATC	3 cut(s)	292, 367, 621
EaeI	YGGCCR	2 cut(s)	193, 513
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	130, 386
Eco24I	GRGCYC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	424
EcoNI	CCTNNNNNAGG	2 cut(s)	629, 764
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	130, 386
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	130, 386
FaeI	CATG	7 cut(s)	47, 134, 200, 214, 343, 390, 449
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	7 cut(s)	43, 130, 196, 210, 339, 386, 445
FauNDI	CATATG	1 cut(s)	289
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	426
FspBI	CTAG	2 cut(s)	309, 618
GlaI	GCGC	1 cut(s)	215
GsaI	CCCAGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	729
HaeIII	GGCC	2 cut(s)	195, 515
HapII	CCGG	4 cut(s)	152, 205, 525, 692
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	7 cut(s)	47, 134, 200, 214, 343, 390, 449
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	3 cut(s)	5, 262, 521
HpaII	CCGG	4 cut(s)	152, 205, 525, 692
HphI	GGTGA	2 cut(s)	170, 734
Hpy166II	GTNNAC	3 cut(s)	202, 226, 589
Hpy188I	TCNGA	2 cut(s)	336, 795
Hpy188III	TCNNGA	5 cut(s)	70, 266, 482, 525, 662
Hpy8I	GTNNAC	3 cut(s)	202, 226, 589
HpyCH4III	ACNGT	3 cut(s)	303, 613, 658
HpyCH4IV	ACGT	2 cut(s)	24, 591
HpyCH4V	TGCA	7 cut(s)	95, 202, 443, 555, 654, 719, 774
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	2 cut(s)	24, 591
Hsp92II	CATG	7 cut(s)	47, 134, 200, 214, 343, 390, 449
HspAI	GCGC	1 cut(s)	214
Kpn2I	TCCGGA	1 cut(s)	524
Kzo9I	GATC	3 cut(s)	292, 367, 621
LmnI	GCTCC	1 cut(s)	318
LweI	GCATC	1 cut(s)	742
MabI	ACCWGGT	1 cut(s)	537
MaeI	CTAG	2 cut(s)	309, 618
MaeII	ACGT	2 cut(s)	24, 591
MaeIII	GTNAC	5 cut(s)	81, 160, 342, 352, 780
MalI	GATC	3 cut(s)	294, 369, 623
MboI	GATC	3 cut(s)	292, 367, 621
MboII	GAAGA	2 cut(s)	293, 297
MflI	RGATCY	1 cut(s)	621
MhlI	GDGCHC	2 cut(s)	204, 426
MlsI	TGGCCA	2 cut(s)	195, 515
MluCI	AATT	2 cut(s)	703, 775
MluNI	TGGCCA	2 cut(s)	195, 515
MmeI	TCCRAC	1 cut(s)	784
MnlI	CCTC	7 cut(s)	271, 277, 326, 562, 590, 625, 753
Mox20I	TGGCCA	2 cut(s)	195, 515
MroI	TCCGGA	1 cut(s)	524
MscI	TGGCCA	2 cut(s)	195, 515
MseI	TTAA	2 cut(s)	87, 501
MslI	CAYNNNNRTG	1 cut(s)	88
Msp20I	TGGCCA	2 cut(s)	195, 515
MspA1I	CMGCKG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	4 cut(s)	152, 205, 525, 692
MspR9I	CCNGG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	539
NcoI	CCATGG	2 cut(s)	130, 386
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	3 cut(s)	292, 367, 621
NlaIII	CATG	7 cut(s)	47, 134, 200, 214, 343, 390, 449
NlaIV	GGNNCC	3 cut(s)	314, 333, 623
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	3 cut(s)	81, 160, 780
NspI	RCATGY	1 cut(s)	343
OliI	CACNNNNGTG	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	710
PfeI	GAWTC	3 cut(s)	5, 262, 521
Psp124BI	GAGCTC	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	3 cut(s)	314, 333, 623
PsuI	RGATCY	1 cut(s)	621
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	2 cut(s)	225, 604
RsaNI	GTAC	2 cut(s)	224, 603
RseI	CAYNNNNRTG	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	87, 501
Sau3AI	GATC	3 cut(s)	292, 367, 621
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	204, 426
SexAI	ACCWGGT	1 cut(s)	537
SfaNI	GCATC	1 cut(s)	742
SmiMI	CAYNNNNRTG	1 cut(s)	88
SmlI	CTYRAG	2 cut(s)	86, 764
SmoI	CTYRAG	2 cut(s)	86, 764
Sse9I	AATT	2 cut(s)	703, 775
SsiI	CCGC	1 cut(s)	600
SspMI	CTAG	2 cut(s)	309, 618
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	130, 386
TaaI	ACNGT	3 cut(s)	303, 613, 658
TaiI	ACGT	2 cut(s)	27, 594
TasI	AATT	2 cut(s)	703, 775
TfiI	GAWTC	3 cut(s)	5, 262, 521
Tru1I	TTAA	2 cut(s)	87, 501
Tru9I	TTAA	2 cut(s)	87, 501
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	3 cut(s)	81, 160, 780
Tsp45I	GTSAC	3 cut(s)	81, 160, 780
TspDTI	ATGAA	6 cut(s)	27, 275, 285, 519, 548, 703
TspRI	CASTG	1 cut(s)	523
Vha464I	CTTAAG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	200
XagI	CCTNNNNNAGG	2 cut(s)	629, 764
XapI	RAATTY	1 cut(s)	703
XceI	RCATGY	1 cut(s)	343
XspI	CTAG	2 cut(s)	309, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.