Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Reverse (-)

5714958 .. 5716651

Gene Structure 1694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG070200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGATTGTAATGAAGCAAAGGACTTGTTCCAAGCTCAATCTCATGTGTACAAACACATATTCAACTTGGTGAGTTCTATGTCACTCAAGTGTGCAGTTCAGCTAGGCATACCAGACGTAATTAACAGCCATGGCCAAGCCATTACTCTACAGGAATTGGTCACAGCACTTCAACTTCACCCAGCTAAATCTGGCTATGTGCAGCGGCTCATGCGTCTAATGGTACACTCTGGTTTCTTTGCTACAAAAAAAGTCTGTAAGAATCAAGAGGAAGAGGCCTATGATCTTACACCGTCTTCTAGGCTCCTCCTGAAAAACAAGGTCCCGAGTTTGTTACCGTTTGCTCTGGGGATGTTTGATCCAGCTATTGCAACCCCATGGCAGTTTTTGGGAAATTGGTTCCGAGGGAACGAGCTCACACCCTTTGAGACTGCACATGGGATGGGATTTTGGGAATACGGAGACAAAAACCCTGAATTCAACAGTGTTTTCAATGAAGCAATGGCCAGTGATTCCGGAATGATGAACTTGGTCATCAAAGACTGCAAGCCAATCTTTGAGGGGTTGACTTCTTTAGTTGATGTAGGAGGTGGTTCAGGAAAAGTTGCTAGGATCCTTTGTGAGGCTTTCCCCAGCTTGAATTGCACAGTTCTTGAACTTCCACATGTTGTTGCTAACCTGCCGGATAGTGCGAATTTGAAGTTCATTGCAGGTGATATGTTCAATGCTATTCCTCCAGCTGATGCTATTTTGCTCAAGTTGACTTTACATGCTTTGAACGACGAGGAATGCTTGAAGGTTCTGAAGAAATGCAGGGAAGCCATTCCAGGCAATGGACAAGGAAAGGTTATTATCATAGACATTGTGATAAACGAGGAGAAAGAAGAGCACGAAACAACTGAAGCAAAGCTCTTCTTTGACATGTTGATGATGGTTGTGGTGACCGGAAGAGAGAGAAGTGAGAGAGAGTGGGAAAAGCTCTTTCTGGAGGCTGGTTTCAGCAAATACAAGATAACACCCATCTTTGGTTTGAGGTCCCTTATTGAAGTTTATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

352

Amino Acids

39.26

Weight (kDa)

5.56

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	18 - 105	2e-19	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	127 - 334	3.4e-52	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	701
Acc36I	ACCTGC	2 cut(s)	687, 701
AccB7I	CCANNNNNTGG	1 cut(s)	833
AccIII	TCCGGA	1 cut(s)	515
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	3 cut(s)	353, 607, 620
AcoI	YGGCCR	2 cut(s)	133, 504
AcsI	RAATTY	2 cut(s)	476, 694
AcuI	CTGAAG	2 cut(s)	824, 921
AfaI	GTAC	2 cut(s)	50, 225
AfiI	CCNNNNNNNGG	3 cut(s)	622, 833, 1025
AflIII	ACRYGT	2 cut(s)	664, 921
AjnI	CCWGG	1 cut(s)	826
AleI	CACNNNNGTG	1 cut(s)	88
AluBI	AGCT	9 cut(s)	35, 103, 185, 365, 415, 636, 740, 910, 979
AluI	AGCT	9 cut(s)	35, 103, 185, 365, 415, 636, 740, 910, 979
Alw21I	GWGCWC	2 cut(s)	417, 891
Alw26I	GTCTC	2 cut(s)	422, 456
AlwI	GGATC	3 cut(s)	353, 607, 620
Ama87I	CYCGRG	1 cut(s)	325
Aor13HI	TCCGGA	1 cut(s)	515
AoxI	GGCC	3 cut(s)	133, 276, 504
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	2 cut(s)	476, 694
Asp700I	GAANNNNTTC	1 cut(s)	822
AspS9I	GGNCC	2 cut(s)	322, 1035
AsuHPI	GGTGA	4 cut(s)	82, 170, 725, 952
AvaI	CYCGRG	1 cut(s)	325
AvaII	GGWCC	2 cut(s)	322, 1035
BalI	TGGCCA	2 cut(s)	135, 506
BamHI	GGATCC	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	417, 891
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	3 cut(s)	436, 925, 1028
BciT130I	CCWGG	1 cut(s)	828
BcoDI	GTCTC	2 cut(s)	422, 456
BfaI	CTAG	3 cut(s)	104, 300, 609
BfmI	CTRYAG	1 cut(s)	149
BfuAI	ACCTGC	2 cut(s)	687, 701
BisI	GCNGC	2 cut(s)	203, 206
BlsI	GCNGC	2 cut(s)	204, 207
Bme1390I	CCNGG	1 cut(s)	828
Bme18I	GGWCC	2 cut(s)	322, 1035
BmeT110I	CYCGRG	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	322, 1035
BmiI	GGNNCC	5 cut(s)	305, 324, 401, 614, 1037
BmrFI	CCNGG	1 cut(s)	828
BmsI	GCATC	1 cut(s)	733
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	2 cut(s)	720, 1007
BpuEI	CTTGAG	2 cut(s)	71, 740
BsaJI	CCNNGG	3 cut(s)	130, 377, 403
BsaWI	WCCGGW	2 cut(s)	515, 944
Bsc4I	CCNNNNNNNGG	3 cut(s)	622, 833, 1025
Bse1I	ACTGG	1 cut(s)	507
Bse3DI	GCAATG	3 cut(s)	507, 705, 838
BseAI	TCCGGA	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	130, 377, 403
BseGI	GGATG	2 cut(s)	357, 447
BseLI	CCNNNNNNNGG	3 cut(s)	622, 833, 1025
BseMI	GCAATG	3 cut(s)	507, 705, 838
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	2 cut(s)	296, 890
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	2 cut(s)	181, 632
BsgI	GTGCAG	3 cut(s)	114, 221, 417
BshFI	GGCC	3 cut(s)	135, 278, 506
BsiHKAI	GWGCWC	2 cut(s)	417, 891
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	3 cut(s)	516, 683, 945
BslFI	GGGAC	2 cut(s)	308, 1021
BslI	CCNNNNNNNGG	3 cut(s)	622, 833, 1025
BsmAI	GTCTC	2 cut(s)	422, 456
BsmFI	GGGAC	2 cut(s)	308, 1021
BsmI	GAATGC	1 cut(s)	794
BsnI	GGCC	3 cut(s)	135, 278, 506
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	417, 891
Bsp13I	TCCGGA	1 cut(s)	515
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	283, 358, 612
Bsp19I	CCATGG	2 cut(s)	130, 377
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	3 cut(s)	135, 278, 506
BspEI	TCCGGA	1 cut(s)	515
BspLI	GGNNCC	5 cut(s)	305, 324, 401, 614, 1037
BspMI	ACCTGC	2 cut(s)	687, 701
BspPI	GGATC	3 cut(s)	353, 607, 620
BspQI	GCTCTTC	2 cut(s)	879, 917
BsrDI	GCAATG	3 cut(s)	507, 705, 838
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	507
BssECI	CCNNGG	3 cut(s)	130, 377, 403
BssMI	GATC	3 cut(s)	283, 358, 612
BssT1I	CCWWGG	2 cut(s)	130, 377
Bst2UI	CCWGG	1 cut(s)	828
Bst4CI	ACNGT	4 cut(s)	294, 339, 485, 649
Bst6I	CTCTTC	4 cut(s)	267, 879, 917, 943
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	1056
BstDSI	CCRYGG	2 cut(s)	130, 377
BstEII	GGTNACC	1 cut(s)	940
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	2 cut(s)	357, 447
BstKTI	GATC	3 cut(s)	286, 361, 615
BstMAI	GTCTC	2 cut(s)	422, 456
BstMBI	GATC	3 cut(s)	283, 358, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 642
BstNI	CCWGG	1 cut(s)	828
BstNSI	RCATGY	3 cut(s)	668, 773, 925
BstPI	GGTNACC	1 cut(s)	940
BstSCI	CCNGG	1 cut(s)	826
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BsuRI	GGCC	3 cut(s)	135, 278, 506
BtgI	CCRYGG	2 cut(s)	130, 377
BtsCI	GGATG	2 cut(s)	357, 447
BtsIMutI	CAGTG	2 cut(s)	490, 514
BveI	ACCTGC	2 cut(s)	687, 701
Cac8I	GCNNGC	1 cut(s)	548
Cfr13I	GGNCC	2 cut(s)	322, 1035
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	49, 224
CviAII	CATG	8 cut(s)	44, 131, 211, 378, 437, 665, 770, 922
CviQI	GTAC	2 cut(s)	49, 224
DdeI	CTNAG	1 cut(s)	1056
DpnI	GATC	3 cut(s)	285, 360, 614
DpnII	GATC	3 cut(s)	283, 358, 612
EaeI	YGGCCR	2 cut(s)	133, 504
Eam1104I	CTCTTC	4 cut(s)	267, 879, 917, 943
EarI	CTCTTC	4 cut(s)	267, 879, 917, 943
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	130, 377
Eco147I	AGGCCT	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	417
Eco47I	GGWCC	2 cut(s)	322, 1035
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	824, 921
Eco88I	CYCGRG	1 cut(s)	325
Eco91I	GGTNACC	1 cut(s)	940
EcoICRI	GAGCTC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoO109I	RGGNCCY	2 cut(s)	322, 1035
EcoO65I	GGTNACC	1 cut(s)	940
EcoRI	GAATTC	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	826
EcoT14I	CCWWGG	2 cut(s)	130, 377
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	2 cut(s)	130, 377
FaeI	CATG	8 cut(s)	47, 134, 214, 381, 440, 668, 773, 925
FalI	AAGNNNNNCTT	4 cut(s)	539, 571, 899, 931
FaqI	GGGAC	2 cut(s)	308, 1021
FatI	CATG	8 cut(s)	43, 130, 210, 377, 436, 664, 769, 921
Fnu4HI	GCNGC	2 cut(s)	203, 206
FokI	GGATG	2 cut(s)	364, 454
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	2 cut(s)	203, 206
FspBI	CTAG	3 cut(s)	104, 300, 609
GluI	GCNGC	2 cut(s)	203, 206
GsaI	CCCAGC	2 cut(s)	185, 636
GsuI	CTGGAG	2 cut(s)	720, 1007
HaeIII	GGCC	3 cut(s)	135, 278, 506
HapII	CCGG	3 cut(s)	516, 683, 945
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	8 cut(s)	47, 134, 214, 381, 440, 668, 773, 925
HincII	GTYRAC	2 cut(s)	567, 762
HindII	GTYRAC	2 cut(s)	567, 762
HinfI	GANTC	2 cut(s)	262, 512
HpaII	CCGG	3 cut(s)	516, 683, 945
HphI	GGTGA	4 cut(s)	82, 170, 725, 952
Hpy166II	GTNNAC	4 cut(s)	49, 226, 567, 762
Hpy188I	TCNGA	2 cut(s)	404, 804
Hpy188III	TCNNGA	7 cut(s)	266, 310, 325, 516, 597, 653, 986
Hpy8I	GTNNAC	4 cut(s)	49, 226, 567, 762
Hpy99I	CGWCG	1 cut(s)	785
HpyAV	CCTTC	1 cut(s)	790
HpyCH4III	ACNGT	4 cut(s)	294, 339, 485, 649
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	8 cut(s)	95, 202, 371, 434, 546, 645, 710, 813
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 642
HpyF3I	CTNAG	1 cut(s)	1056
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	8 cut(s)	47, 134, 214, 381, 440, 668, 773, 925
Kpn2I	TCCGGA	1 cut(s)	515
Kzo9I	GATC	3 cut(s)	283, 358, 612
LguI	GCTCTTC	2 cut(s)	879, 917
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	3 cut(s)	104, 300, 609
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	4 cut(s)	81, 160, 333, 940
MalI	GATC	3 cut(s)	285, 360, 614
MboI	GATC	3 cut(s)	283, 358, 612
MboII	GAAGA	6 cut(s)	284, 288, 817, 896, 904, 960
MflI	RGATCY	1 cut(s)	612
MhlI	GDGCHC	2 cut(s)	417, 891
MlsI	TGGCCA	2 cut(s)	135, 506
MluCI	AATT	6 cut(s)	120, 155, 394, 476, 640, 694
MluNI	TGGCCA	2 cut(s)	135, 506
Mox20I	TGGCCA	2 cut(s)	135, 506
MroI	TCCGGA	1 cut(s)	515
MroXI	GAANNNNTTC	1 cut(s)	822
MscI	TGGCCA	2 cut(s)	135, 506
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	2 cut(s)	88, 926
Msp20I	TGGCCA	2 cut(s)	135, 506
MspA1I	CMGCKG	2 cut(s)	205, 740
MspI	CCGG	3 cut(s)	516, 683, 945
MspR9I	CCNGG	1 cut(s)	828
Mva1269I	GAATGC	1 cut(s)	794
MvaI	CCWGG	1 cut(s)	828
MwoI	GCNNNNNNNGC	2 cut(s)	211, 642
NcoI	CCATGG	2 cut(s)	130, 377
NdeII	GATC	3 cut(s)	283, 358, 612
NlaIII	CATG	8 cut(s)	47, 134, 214, 381, 440, 668, 773, 925
NlaIV	GGNNCC	5 cut(s)	305, 324, 401, 614, 1037
NmuCI	GTSAC	3 cut(s)	81, 160, 940
NspI	RCATGY	3 cut(s)	668, 773, 925
OliI	CACNNNNGTG	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	701
PceI	AGGCCT	1 cut(s)	278
PciI	ACATGT	2 cut(s)	664, 921
PciSI	GCTCTTC	2 cut(s)	879, 917
PctI	GAATGC	1 cut(s)	794
PdmI	GAANNNNTTC	1 cut(s)	822
PfeI	GAWTC	2 cut(s)	262, 512
PflMI	CCANNNNNTGG	1 cut(s)	833
PkrI	GCNGC	2 cut(s)	204, 207
PpuMI	RGGWCCY	2 cut(s)	322, 1035
PscI	ACATGT	2 cut(s)	664, 921
Psp124BI	GAGCTC	1 cut(s)	417
Psp5II	RGGWCCY	2 cut(s)	322, 1035
Psp6I	CCWGG	1 cut(s)	826
PspEI	GGTNACC	1 cut(s)	940
PspFI	CCCAGC	2 cut(s)	181, 632
PspGI	CCWGG	1 cut(s)	826
PspN4I	GGNNCC	5 cut(s)	305, 324, 401, 614, 1037
PspPI	GGNCC	2 cut(s)	322, 1035
PspPPI	RGGWCCY	2 cut(s)	322, 1035
PsuI	RGATCY	1 cut(s)	612
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	2 cut(s)	50, 225
RsaNI	GTAC	2 cut(s)	49, 224
RseI	CAYNNNNRTG	2 cut(s)	88, 926
SacI	GAGCTC	1 cut(s)	417
SapI	GCTCTTC	2 cut(s)	879, 917
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	203, 206
Sau3AI	GATC	3 cut(s)	283, 358, 612
Sau96I	GGNCC	2 cut(s)	322, 1035
ScrFI	CCNGG	1 cut(s)	828
SduI	GDGCHC	2 cut(s)	417, 891
SfaNI	GCATC	1 cut(s)	733
SfcI	CTRYAG	1 cut(s)	149
SinI	GGWCC	2 cut(s)	322, 1035
SmiMI	CAYNNNNRTG	2 cut(s)	88, 926
SmlI	CTYRAG	2 cut(s)	86, 755
SmoI	CTYRAG	2 cut(s)	86, 755
Sse9I	AATT	6 cut(s)	120, 155, 394, 476, 640, 694
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	3 cut(s)	104, 300, 609
SstI	GAGCTC	1 cut(s)	417
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	826
StyI	CCWWGG	2 cut(s)	130, 377
TaaI	ACNGT	4 cut(s)	294, 339, 485, 649
TaiI	ACGT	1 cut(s)	120
TasI	AATT	6 cut(s)	120, 155, 394, 476, 640, 694
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	262, 512
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	490, 514
TseFI	GTSAC	3 cut(s)	81, 160, 940
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	3 cut(s)	81, 160, 940
TspDTI	ATGAA	4 cut(s)	27, 510, 539, 694
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	2 cut(s)	490, 514
Van91I	CCANNNNNTGG	1 cut(s)	833
VpaK11BI	GGWCC	2 cut(s)	322, 1035
XagI	CCTNNNNNAGG	1 cut(s)	620
XapI	RAATTY	2 cut(s)	476, 694
XceI	RCATGY	3 cut(s)	668, 773, 925
XmnI	GAANNNNTTC	1 cut(s)	822
XspI	CTAG	3 cut(s)	104, 300, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.