Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Reverse (-)

7186636 .. 7187806

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAGTCTAATGAAGCAAAGGACTTGTTCCAAGCTCAATCTCATGTGTACAAACACATATTCAACTTCGAATTGGTCACAGCACTTCAACTTCACCCATCTAAATCTGGCTATGTGCAGCGGCTCATGCGTCTAATGGTACACTCTGGTTTCTTTGCTACAAAAAAAGTCTGTCAGAATCAAGATGAACAAGAGGAAGAGGCCTATGATCTTACACCGTCTTCTAGGCTCCTCCTGAAAAACAAGGTCCCGAGTTTGTTACCGTTTGCTCTGGGGATGTTTGATCCAGCTTTTGCAACCCCATGGCAGTTTTTGGGAAATTGGTTCCGAGGGAACGAGCTCACACCCTTTGAGACTGCACATGGGATGGGATTTTGGGAATACGGAGACAAAAACCCTGAATTCAACAGTGTTTTCAATGAAGCAATGGCCAGTGATTCCGGAATGATGAACTTGGGGTTGACTTCTTTAGTTGATGTAGGAGGTGGTACTGGAAAAGTTGCTAGGATCCTTTGTGAGGCTTTCCCCAACTTGAATTGCACAGTTCTTCAACTTCCACAAGTTGTTGCTCACTTGCCGGATAGTGCGAATTTGAAGTTCATTGCAGGTGATATGTTCAATGCTATTCCTCCAGCTGACGCTATTCTGCTCAAGTTAACTTTACATGATTTGAGCGACGAGGAATGCTTGAAGGTTCTGAGGAAATGTAGGGAAGCTATTCCAGACAGTGGTCAAGGAAAGGTTATTATCATAGAAATTGTGATAAACGGGGAGAAAGACGAGCACGAATCAACTGAAGCAAAGCTCTTCTTTGACATGTTGATGATGGTTGTGGTGACCGGAAGAGATGTTGGAACTTGTGGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

290

Amino Acids

32.11

Weight (kDa)

5.04

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	24 - 80	9.9e-06	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	102 - 282	1.1e-40	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	596
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccIII	TCCGGA	1 cut(s)	440
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	3 cut(s)	278, 502, 515
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	2 cut(s)	401, 589
AcuI	CTGAAG	1 cut(s)	816
AfaI	GTAC	3 cut(s)	50, 141, 490
AfiI	CCNNNNNNNGG	2 cut(s)	517, 728
AflIII	ACRYGT	1 cut(s)	816
AgsI	TTSAA	9 cut(s)	64, 89, 406, 418, 535, 551, 595, 619, 691
AluBI	AGCT	6 cut(s)	35, 290, 340, 635, 716, 805
AluI	AGCT	6 cut(s)	35, 290, 340, 635, 716, 805
Alw21I	GWGCWC	2 cut(s)	342, 786
Alw26I	GTCTC	2 cut(s)	347, 381
AlwI	GGATC	3 cut(s)	278, 502, 515
Ama87I	CYCGRG	1 cut(s)	250
Aor13HI	TCCGGA	1 cut(s)	440
AoxI	GGCC	2 cut(s)	201, 429
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	2 cut(s)	401, 589
Asp700I	GAANNNNTTC	1 cut(s)	717
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	86, 620, 847
AsuII	TTCGAA	1 cut(s)	69
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	507
BanII	GRGCYC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	342, 786
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	106, 361, 820
BcoDI	GTCTC	2 cut(s)	347, 381
BfaI	CTAG	2 cut(s)	225, 504
BfuAI	ACCTGC	1 cut(s)	596
BisI	GCNGC	2 cut(s)	119, 122
BlsI	GCNGC	2 cut(s)	120, 123
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	4 cut(s)	230, 249, 326, 509
BoxI	GACNNNNGTC	1 cut(s)	729
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	615
Bpu14I	TTCGAA	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	635
BsaJI	CCNNGG	2 cut(s)	302, 328
BsaWI	WCCGGW	2 cut(s)	440, 839
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 728
Bse1I	ACTGG	2 cut(s)	432, 496
Bse3DI	GCAATG	2 cut(s)	432, 600
BseAI	TCCGGA	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	302, 328
BseGI	GGATG	2 cut(s)	282, 372
BseLI	CCNNNNNNNGG	2 cut(s)	517, 728
BseMI	GCAATG	2 cut(s)	432, 600
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	2 cut(s)	432, 496
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	130
BsgI	GTGCAG	2 cut(s)	137, 342
BshFI	GGCC	2 cut(s)	203, 431
BsiHKAI	GWGCWC	2 cut(s)	342, 786
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	441, 578, 840
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	517, 728
BsmAI	GTCTC	2 cut(s)	347, 381
BsmFI	GGGAC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	689
BsnI	GGCC	2 cut(s)	203, 431
BsoBI	CYCGRG	1 cut(s)	250
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	342, 786
Bsp13I	TCCGGA	1 cut(s)	440
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	208, 283, 507
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	203, 431
BspCNI	CTCAG	1 cut(s)	690
BspEI	TCCGGA	1 cut(s)	440
BspLI	GGNNCC	4 cut(s)	230, 249, 326, 509
BspMI	ACCTGC	1 cut(s)	596
BspPI	GGATC	3 cut(s)	278, 502, 515
BspQI	GCTCTTC	1 cut(s)	812
BspT104I	TTCGAA	1 cut(s)	69
BsrDI	GCAATG	2 cut(s)	432, 600
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	432, 496
BssECI	CCNNGG	2 cut(s)	302, 328
BssMI	GATC	3 cut(s)	208, 283, 507
BssT1I	CCWWGG	1 cut(s)	302
Bst4CI	ACNGT	5 cut(s)	219, 264, 410, 544, 728
Bst6I	CTCTTC	3 cut(s)	192, 812, 838
BstAUI	TGTACA	1 cut(s)	48
BstBI	TTCGAA	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	698
BstDSI	CCRYGG	1 cut(s)	302
BstEII	GGTNACC	1 cut(s)	835
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	282, 372
BstKTI	GATC	3 cut(s)	211, 286, 510
BstMAI	GTCTC	2 cut(s)	347, 381
BstMBI	GATC	3 cut(s)	208, 283, 507
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	820
BstPAI	GACNNNNGTC	1 cut(s)	729
BstPI	GGTNACC	1 cut(s)	835
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	203, 431
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	282, 372
BtsIMutI	CAGTG	3 cut(s)	415, 439, 733
BveI	ACCTGC	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	2 cut(s)	119, 647
Csp6I	GTAC	3 cut(s)	49, 140, 489
CviAII	CATG	6 cut(s)	44, 127, 303, 362, 665, 817
CviQI	GTAC	3 cut(s)	49, 140, 489
DdeI	CTNAG	1 cut(s)	698
DpnI	GATC	3 cut(s)	210, 285, 509
DpnII	GATC	3 cut(s)	208, 283, 507
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	3 cut(s)	192, 812, 838
EarI	CTCTTC	3 cut(s)	192, 812, 838
Ecl136II	GAGCTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	302
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	816
Eco88I	CYCGRG	1 cut(s)	250
Eco91I	GGTNACC	1 cut(s)	835
EcoICRI	GAGCTC	1 cut(s)	340
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoO109I	RGGNCCY	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	835
EcoRI	GAATTC	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	6 cut(s)	47, 130, 306, 365, 668, 820
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	6 cut(s)	43, 126, 302, 361, 664, 816
Fnu4HI	GCNGC	2 cut(s)	119, 122
FokI	GGATG	2 cut(s)	289, 379
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	2 cut(s)	119, 122
FspBI	CTAG	2 cut(s)	225, 504
GluI	GCNGC	2 cut(s)	119, 122
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	2 cut(s)	203, 431
HapII	CCGG	3 cut(s)	441, 578, 840
HgaI	GACGC	2 cut(s)	119, 647
Hin1II	CATG	6 cut(s)	47, 130, 306, 365, 668, 820
HincII	GTYRAC	2 cut(s)	462, 657
HindII	GTYRAC	2 cut(s)	462, 657
HinfI	GANTC	4 cut(s)	5, 178, 437, 788
HpaI	GTTAAC	1 cut(s)	657
HpaII	CCGG	3 cut(s)	441, 578, 840
HphI	GGTGA	3 cut(s)	86, 620, 847
Hpy166II	GTNNAC	4 cut(s)	49, 142, 462, 657
Hpy188I	TCNGA	3 cut(s)	177, 329, 699
Hpy188III	TCNNGA	5 cut(s)	182, 235, 250, 441, 722
Hpy8I	GTNNAC	4 cut(s)	49, 142, 462, 657
Hpy99I	CGWCG	1 cut(s)	680
HpyAV	CCTTC	1 cut(s)	685
HpyCH4III	ACNGT	5 cut(s)	219, 264, 410, 544, 728
HpyCH4V	TGCA	5 cut(s)	118, 296, 359, 540, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	698
Hsp92II	CATG	6 cut(s)	47, 130, 306, 365, 668, 820
Kpn2I	TCCGGA	1 cut(s)	440
KspAI	GTTAAC	1 cut(s)	657
Kzo9I	GATC	3 cut(s)	208, 283, 507
LguI	GCTCTTC	1 cut(s)	812
LmnI	GCTCC	1 cut(s)	234
Lsp1109I	GCAGC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	225, 504
MaeIII	GTNAC	3 cut(s)	76, 258, 835
MalI	GATC	3 cut(s)	210, 285, 509
MboI	GATC	3 cut(s)	208, 283, 507
MboII	GAAGA	5 cut(s)	209, 213, 539, 799, 855
MflI	RGATCY	1 cut(s)	507
MhlI	GDGCHC	2 cut(s)	342, 786
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	6 cut(s)	71, 319, 401, 535, 589, 756
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	832
MnlI	CCTC	9 cut(s)	187, 193, 242, 323, 476, 511, 639, 673, 693
Mox20I	TGGCCA	1 cut(s)	431
MroI	TCCGGA	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	1 cut(s)	656
MslI	CAYNNNNRTG	1 cut(s)	821
Msp20I	TGGCCA	1 cut(s)	431
MspA1I	CMGCKG	2 cut(s)	121, 635
MspI	CCGG	3 cut(s)	441, 578, 840
Mva1269I	GAATGC	1 cut(s)	689
MwoI	GCNNNNNNNGC	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	3 cut(s)	208, 283, 507
NlaIII	CATG	6 cut(s)	47, 130, 306, 365, 668, 820
NlaIV	GGNNCC	4 cut(s)	230, 249, 326, 509
NmuCI	GTSAC	2 cut(s)	76, 835
NspI	RCATGY	1 cut(s)	820
NspV	TTCGAA	1 cut(s)	69
PaqCI	CACCTGC	1 cut(s)	596
PceI	AGGCCT	1 cut(s)	203
PciI	ACATGT	1 cut(s)	816
PciSI	GCTCTTC	1 cut(s)	812
PctI	GAATGC	1 cut(s)	689
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	3 cut(s)	178, 437, 788
PflMI	CCANNNNNTGG	1 cut(s)	728
PkrI	GCNGC	2 cut(s)	120, 123
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	247
PscI	ACATGT	1 cut(s)	816
PshAI	GACNNNNGTC	1 cut(s)	729
Psp124BI	GAGCTC	1 cut(s)	342
Psp5II	RGGWCCY	1 cut(s)	247
PspEI	GGTNACC	1 cut(s)	835
PspN4I	GGNNCC	4 cut(s)	230, 249, 326, 509
PspPI	GGNCC	1 cut(s)	247
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	507
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	3 cut(s)	50, 141, 490
RsaNI	GTAC	3 cut(s)	49, 140, 489
RseI	CAYNNNNRTG	1 cut(s)	821
SacI	GAGCTC	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	812
SaqAI	TTAA	1 cut(s)	656
SatI	GCNGC	2 cut(s)	119, 122
Sau3AI	GATC	3 cut(s)	208, 283, 507
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	342, 786
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	6 cut(s)	71, 319, 401, 535, 589, 756
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	2 cut(s)	225, 504
SstI	GAGCTC	1 cut(s)	342
StuI	AGGCCT	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	5 cut(s)	219, 264, 410, 544, 728
TaqI	TCGA	1 cut(s)	69
TasI	AATT	6 cut(s)	71, 319, 401, 535, 589, 756
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	3 cut(s)	178, 437, 788
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TscAI	CASTG	3 cut(s)	415, 439, 733
TseFI	GTSAC	2 cut(s)	76, 835
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	2 cut(s)	76, 835
TspDTI	ATGAA	5 cut(s)	27, 201, 435, 464, 589
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	3 cut(s)	415, 439, 733
Van91I	CCANNNNNTGG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	247
XagI	CCTNNNNNAGG	1 cut(s)	515
XapI	RAATTY	2 cut(s)	401, 589
XceI	RCATGY	1 cut(s)	820
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	2 cut(s)	225, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.