Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Forward (+)

88167737 .. 88169046

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATTCTAATGAAGCAAAGGACTTGTTCCAAGCTCAATCTCATGTGTACAAACACATATTGAACTTCGTGGGTTCTATGTCACTCAAGTGTGCGGTTCAGCTAGGCATACCAGACGTAATTAACAGCCATGGCCAAGCCATTACTCTACCGGAATTGGTCACAGCACTTCAACTTCACCCAGCTAAATCTGGCTATGTGCAGCGGCTCAAGCGTCTAATGTCTAAGAATCAAGATGAACAAGAGGAAGAGGCCTATGATCTTACACCGTCTTCTAGGCTCCTCCTGAAAAACAAGGTCCCGAGTTTGTTACCGTTTGCTCTGGGGATGTTTGATCCAGCTATTGCAACCCCATGGCAGTTTTTGGGAAATTGGTTCCGAGGGAACGAGCTCACACCCTTTGAGACTGCACATGAGATGGGATTTTGGGAATACGGTGACAAAAACCCTGAATTCAACAGTGTTTTCAATGAAGCAATGGCCAGTGATTCCGGAATGATGAACTTGGTCATCAAAGACTGCAAGCCAATCTTTGAGGGGTTGACTTCTTTAGTTGATGTAGGAGGTGGTACTGGAAAAGTTGCTAGGATCCTTTGTGAGGCTTTCCCCAACTTGAATTGCACAGTTCTTGAACTTCCACAAGTTGTTGCTGACTTGCCGGATAGTGCGAATTTGAAGTTCATTGCAGGTGATATGTTCAATGCTATTCCTCCAGCTGATGCTATTCTGCTCAAGTTAACTTTACATGCTTTGAACGACGAGGAATGCTTGAAGGTTTTGAAGAAATGCATGGAAGCTATTCCAGGCAATGGCCAAGGAAAGGTTATTATCATAGACATTGTGATAAACGAGGAGAAAGAAGAGCACGAAACAACTGAAGCAAAGCTCTTCTTTGACATGTTGATGATGGTTGTGGTGACCGGAAGAGAGAGAAGTGAGAAAGAGTGGGAAAAGCTCTTTCTGGAGGCTGGTTTCAGCAAATACAAGATAACACCCATCTTTGGTTTAAGGTCCATTATTGAAGTTTATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

344

Amino Acids

38.38

Weight (kDa)

4.98

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	18 - 97	1.9e-12	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	119 - 326	3.3e-50	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	677
Acc36I	ACCTGC	1 cut(s)	677
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	2 cut(s)	95, 205
AclWI	GGATC	3 cut(s)	329, 583, 596
AcoI	YGGCCR	3 cut(s)	133, 480, 811
AcsI	RAATTY	2 cut(s)	452, 670
AcuI	CTGAAG	1 cut(s)	897
AfaI	GTAC	2 cut(s)	50, 571
AfiI	CCNNNNNNNGG	4 cut(s)	598, 809, 820, 1001
AflIII	ACRYGT	1 cut(s)	897
AjnI	CCWGG	1 cut(s)	802
AleI	CACNNNNGTG	1 cut(s)	88
AluBI	AGCT	9 cut(s)	35, 103, 185, 341, 391, 716, 797, 886, 955
AluI	AGCT	9 cut(s)	35, 103, 185, 341, 391, 716, 797, 886, 955
Alw21I	GWGCWC	2 cut(s)	393, 867
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	3 cut(s)	329, 583, 596
Ama87I	CYCGRG	1 cut(s)	301
Aor13HI	TCCGGA	1 cut(s)	491
AoxI	GGCC	4 cut(s)	133, 252, 480, 811
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	2 cut(s)	452, 670
Asp700I	GAANNNNTTC	1 cut(s)	798
AspS9I	GGNCC	2 cut(s)	298, 1011
AsuHPI	GGTGA	4 cut(s)	170, 449, 701, 928
AvaI	CYCGRG	1 cut(s)	301
AvaII	GGWCC	2 cut(s)	298, 1011
BalI	TGGCCA	3 cut(s)	135, 482, 813
BamHI	GGATCC	1 cut(s)	588
BanII	GRGCYC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	2 cut(s)	393, 867
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	3 cut(s)	412, 901, 1004
BciT130I	CCWGG	1 cut(s)	804
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	3 cut(s)	104, 276, 585
BfuAI	ACCTGC	1 cut(s)	677
BisI	GCNGC	2 cut(s)	203, 206
BlsI	GCNGC	2 cut(s)	204, 207
Bme1390I	CCNGG	1 cut(s)	804
Bme18I	GGWCC	2 cut(s)	298, 1011
BmeT110I	CYCGRG	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	298, 1011
BmiI	GGNNCC	4 cut(s)	281, 300, 377, 590
BmrFI	CCNGG	1 cut(s)	804
BmsI	GCATC	1 cut(s)	709
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	2 cut(s)	696, 983
BpuEI	CTTGAG	3 cut(s)	71, 194, 716
BsaJI	CCNNGG	4 cut(s)	130, 353, 379, 814
BsaWI	WCCGGW	3 cut(s)	151, 491, 920
Bsc4I	CCNNNNNNNGG	4 cut(s)	598, 809, 820, 1001
Bse1I	ACTGG	2 cut(s)	483, 577
Bse3DI	GCAATG	3 cut(s)	483, 681, 814
BseAI	TCCGGA	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	4 cut(s)	130, 353, 379, 814
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	4 cut(s)	598, 809, 820, 1001
BseMI	GCAATG	3 cut(s)	483, 681, 814
BseNI	ACTGG	2 cut(s)	483, 577
BseRI	GAGGAG	2 cut(s)	272, 866
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	2 cut(s)	221, 393
BshFI	GGCC	4 cut(s)	135, 254, 482, 813
BsiHKAI	GWGCWC	2 cut(s)	393, 867
BsiHKCI	CYCGRG	1 cut(s)	301
BsiSI	CCGG	4 cut(s)	152, 492, 659, 921
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	4 cut(s)	598, 809, 820, 1001
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	770
BsnI	GGCC	4 cut(s)	135, 254, 482, 813
BsoBI	CYCGRG	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	393, 867
Bsp13I	TCCGGA	1 cut(s)	491
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	259, 334, 588
Bsp19I	CCATGG	2 cut(s)	130, 353
BspACI	CCGC	2 cut(s)	95, 205
BspANI	GGCC	4 cut(s)	135, 254, 482, 813
BspEI	TCCGGA	1 cut(s)	491
BspLI	GGNNCC	4 cut(s)	281, 300, 377, 590
BspMI	ACCTGC	1 cut(s)	677
BspPI	GGATC	3 cut(s)	329, 583, 596
BspQI	GCTCTTC	2 cut(s)	855, 893
BsrDI	GCAATG	3 cut(s)	483, 681, 814
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	483, 577
BssECI	CCNNGG	4 cut(s)	130, 353, 379, 814
BssMI	GATC	3 cut(s)	259, 334, 588
BssT1I	CCWWGG	3 cut(s)	130, 353, 814
Bst2UI	CCWGG	1 cut(s)	804
Bst4CI	ACNGT	5 cut(s)	270, 315, 437, 461, 625
Bst6I	CTCTTC	4 cut(s)	243, 855, 893, 919
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	2 cut(s)	225, 1032
BstDSI	CCRYGG	2 cut(s)	130, 353
BstEII	GGTNACC	1 cut(s)	916
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	333
BstKTI	GATC	3 cut(s)	262, 337, 591
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	3 cut(s)	259, 334, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	1 cut(s)	804
BstNSI	RCATGY	2 cut(s)	749, 901
BstPI	GGTNACC	1 cut(s)	916
BstSCI	CCNGG	1 cut(s)	802
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	135, 254, 482, 813
BtgI	CCRYGG	2 cut(s)	130, 353
BtsCI	GGATG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	466, 490
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	1 cut(s)	524
Cfr13I	GGNCC	2 cut(s)	298, 1011
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	49, 570
CviAII	CATG	7 cut(s)	44, 131, 354, 413, 746, 790, 898
CviQI	GTAC	2 cut(s)	49, 570
DdeI	CTNAG	2 cut(s)	225, 1032
DpnI	GATC	3 cut(s)	261, 336, 590
DpnII	GATC	3 cut(s)	259, 334, 588
EaeI	YGGCCR	3 cut(s)	133, 480, 811
Eam1104I	CTCTTC	4 cut(s)	243, 855, 893, 919
EarI	CTCTTC	4 cut(s)	243, 855, 893, 919
Ecl136II	GAGCTC	1 cut(s)	391
Eco130I	CCWWGG	3 cut(s)	130, 353, 814
Eco147I	AGGCCT	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	298, 1011
Eco53kI	GAGCTC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	897
Eco88I	CYCGRG	1 cut(s)	301
Eco91I	GGTNACC	1 cut(s)	916
EcoICRI	GAGCTC	1 cut(s)	391
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	298
EcoO65I	GGTNACC	1 cut(s)	916
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	802
EcoT14I	CCWWGG	3 cut(s)	130, 353, 814
EcoT22I	ATGCAT	1 cut(s)	791
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	3 cut(s)	130, 353, 814
FaeI	CATG	7 cut(s)	47, 134, 357, 416, 749, 793, 901
FalI	AAGNNNNNCTT	4 cut(s)	515, 547, 875, 907
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	7 cut(s)	43, 130, 353, 412, 745, 789, 897
Fnu4HI	GCNGC	2 cut(s)	203, 206
FokI	GGATG	1 cut(s)	340
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	2 cut(s)	203, 206
FspBI	CTAG	3 cut(s)	104, 276, 585
GluI	GCNGC	2 cut(s)	203, 206
GsaI	CCCAGC	1 cut(s)	185
GsuI	CTGGAG	2 cut(s)	696, 983
HaeIII	GGCC	4 cut(s)	135, 254, 482, 813
HapII	CCGG	4 cut(s)	152, 492, 659, 921
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	7 cut(s)	47, 134, 357, 416, 749, 793, 901
HincII	GTYRAC	2 cut(s)	543, 738
HindII	GTYRAC	2 cut(s)	543, 738
HinfI	GANTC	3 cut(s)	5, 229, 488
HpaI	GTTAAC	1 cut(s)	738
HpaII	CCGG	4 cut(s)	152, 492, 659, 921
HphI	GGTGA	4 cut(s)	170, 449, 701, 928
Hpy166II	GTNNAC	3 cut(s)	49, 543, 738
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	6 cut(s)	233, 286, 301, 492, 629, 962
Hpy8I	GTNNAC	3 cut(s)	49, 543, 738
Hpy99I	CGWCG	1 cut(s)	761
HpyAV	CCTTC	1 cut(s)	766
HpyCH4III	ACNGT	5 cut(s)	270, 315, 437, 461, 625
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	7 cut(s)	202, 347, 410, 522, 621, 686, 789
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	2 cut(s)	225, 1032
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	7 cut(s)	47, 134, 357, 416, 749, 793, 901
Kpn2I	TCCGGA	1 cut(s)	491
KspAI	GTTAAC	1 cut(s)	738
Kzo9I	GATC	3 cut(s)	259, 334, 588
LguI	GCTCTTC	2 cut(s)	855, 893
LmnI	GCTCC	1 cut(s)	285
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	3 cut(s)	104, 276, 585
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	5 cut(s)	81, 160, 309, 437, 916
MalI	GATC	3 cut(s)	261, 336, 590
MboI	GATC	3 cut(s)	259, 334, 588
MboII	GAAGA	6 cut(s)	260, 264, 793, 872, 880, 936
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	2 cut(s)	393, 867
MlsI	TGGCCA	3 cut(s)	135, 482, 813
MluCI	AATT	6 cut(s)	120, 155, 370, 452, 616, 670
MluNI	TGGCCA	3 cut(s)	135, 482, 813
Mox20I	TGGCCA	3 cut(s)	135, 482, 813
Mph1103I	ATGCAT	1 cut(s)	791
MroI	TCCGGA	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	798
MscI	TGGCCA	3 cut(s)	135, 482, 813
MseI	TTAA	3 cut(s)	123, 737, 1007
MslI	CAYNNNNRTG	2 cut(s)	88, 902
Msp20I	TGGCCA	3 cut(s)	135, 482, 813
MspA1I	CMGCKG	2 cut(s)	205, 716
MspI	CCGG	4 cut(s)	152, 492, 659, 921
MspR9I	CCNGG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	804
MwoI	GCNNNNNNNGC	1 cut(s)	211
NcoI	CCATGG	2 cut(s)	130, 353
NdeII	GATC	3 cut(s)	259, 334, 588
NlaIII	CATG	7 cut(s)	47, 134, 357, 416, 749, 793, 901
NlaIV	GGNNCC	4 cut(s)	281, 300, 377, 590
NmuCI	GTSAC	4 cut(s)	81, 160, 437, 916
NsiI	ATGCAT	1 cut(s)	791
NspI	RCATGY	2 cut(s)	749, 901
OliI	CACNNNNGTG	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	677
PceI	AGGCCT	1 cut(s)	254
PciI	ACATGT	1 cut(s)	897
PciSI	GCTCTTC	2 cut(s)	855, 893
PctI	GAATGC	1 cut(s)	770
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	3 cut(s)	5, 229, 488
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	2 cut(s)	204, 207
PpuMI	RGGWCCY	1 cut(s)	298
PscI	ACATGT	1 cut(s)	897
Psp124BI	GAGCTC	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	802
PspEI	GGTNACC	1 cut(s)	916
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	4 cut(s)	281, 300, 377, 590
PspPI	GGNCC	2 cut(s)	298, 1011
PspPPI	RGGWCCY	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	588
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	2 cut(s)	50, 571
RsaNI	GTAC	2 cut(s)	49, 570
RseI	CAYNNNNRTG	2 cut(s)	88, 902
SacI	GAGCTC	1 cut(s)	393
SapI	GCTCTTC	2 cut(s)	855, 893
SaqAI	TTAA	3 cut(s)	123, 737, 1007
SatI	GCNGC	2 cut(s)	203, 206
Sau3AI	GATC	3 cut(s)	259, 334, 588
Sau96I	GGNCC	2 cut(s)	298, 1011
ScrFI	CCNGG	1 cut(s)	804
SduI	GDGCHC	2 cut(s)	393, 867
SfaNI	GCATC	1 cut(s)	709
SinI	GGWCC	2 cut(s)	298, 1011
SmiMI	CAYNNNNRTG	2 cut(s)	88, 902
SmlI	CTYRAG	3 cut(s)	86, 209, 731
SmoI	CTYRAG	3 cut(s)	86, 209, 731
Sse9I	AATT	6 cut(s)	120, 155, 370, 452, 616, 670
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	2 cut(s)	95, 205
SspMI	CTAG	3 cut(s)	104, 276, 585
SstI	GAGCTC	1 cut(s)	393
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	802
StyI	CCWWGG	3 cut(s)	130, 353, 814
TaaI	ACNGT	5 cut(s)	270, 315, 437, 461, 625
TaiI	ACGT	1 cut(s)	120
TasI	AATT	6 cut(s)	120, 155, 370, 452, 616, 670
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	3 cut(s)	5, 229, 488
Tru1I	TTAA	3 cut(s)	123, 737, 1007
Tru9I	TTAA	3 cut(s)	123, 737, 1007
TscAI	CASTG	2 cut(s)	466, 490
TseFI	GTSAC	4 cut(s)	81, 160, 437, 916
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	4 cut(s)	81, 160, 437, 916
TspDTI	ATGAA	5 cut(s)	27, 252, 486, 515, 670
TspRI	CASTG	2 cut(s)	466, 490
Van91I	CCANNNNNTGG	1 cut(s)	809
VpaK11BI	GGWCC	2 cut(s)	298, 1011
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	2 cut(s)	452, 670
XceI	RCATGY	2 cut(s)	749, 901
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	3 cut(s)	104, 276, 585
Zsp2I	ATGCAT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.