Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Reverse (-)

6303896 .. 6305163

Gene Structure 1268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG074300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGATTCTAATGAAGCAAGGGACGTGTTCCAAGCTCAATCTCATGTGTATAAGCACATATTCAACTTCGTGAGTTCTATGTCACTCAAGTGTGCAGTTCAGCTCGGCATACCAGATATAATCAACAGCCATGGCAGAGCCATTACTCTACCGGAGTTGGTCACAGTACTTCAACTTCACCCAGCTAAAACTGGCCATGTGCACCGGCTCATGCGCCTAATGGTACACTCTGGTTTCTTTGCTACAAAACAAGTCTGTATGAATCAAGATGAACAAGAGGAAGAGGCATATGATCTTACACCGTCTTCTAGGCTCCTCCTAAAAGACAAGGTTCCGAGCATGTTACCCATTGTTACAGCAATGCTTGATCCAGCTTTTACAACCCCATGGCAGTTTTTGGGAAAATGGTTCTGTGGGAATGAGCTCACACCATTTGAGACTGCACATGGGATGGGATTGTGGGAATACGGGGATAAAAATCCTGAGTTCAACAATCTTTTTAATGAAACAATGGCCAGTGATTCCGGAATGATGAACCTGGTCATCAAAGACTGCAAGCCAATCTTTGAGGGGTTGAGTTCTTTAGTTGACGTAGGAGGCGGTACAGGAACAGTTGCTAGGATCCTTTGTGAGGCTTTCCCCAACTTGAAATGCACAGTTCTTGAACTTCCACAAGTTGTTGCTAACTTGCCGGATAGTGCGAATTTGAAGTTCATTGCAGGTGATATGTTCAATGCTATTCCTCCAGCTGATGCTATCCTGCTCAAGAAGATGAATGGTTATACTTATATACATGACTGTAAATTGGTGACAAAATTGAGTAAAATGCAGTTGACTTTACATGATTTGAGCGACGAGGAATGCTTGAAGGTTCTGAAGAAATGTAGAGAAGCTATTCCAGACAGTGGTCAAGGAAAGGTTATTATCATAGAAATTGTGATAAACGAGGAGAAAGACGTGCGCGAATCAACTGAAGCAAAGCTCTTCTTTGACATGTTGATGATGGTTGTGGTGACCGGAAGAGAGAGAAGTGAGAAGGAGTGGGAAAAGCTTTTTCTGGAGGCTGGTTTCAGCAAGTACAAGATAACTCCCATCTTCGGTTTAAGGTCCCTTATTGAAGTTTATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

376

Amino Acids

42.23

Weight (kDa)

5.54

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	18 - 109	4.6e-19	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	130 - 258	2.4e-28	O-methyltransferase domain
Methyltransf_2	PF00891	276 - 358	9.4e-19	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	710
Acc36I	ACCTGC	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	905
AccII	CGCG	1 cut(s)	963
AccIII	TCCGGA	1 cut(s)	524
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	3 cut(s)	362, 616, 629
AcoI	YGGCCR	2 cut(s)	193, 513
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	2 cut(s)	896, 993
AfaI	GTAC	4 cut(s)	168, 225, 604, 1079
AfiI	CCNNNNNNNGG	3 cut(s)	631, 905, 1097
AflIII	ACRYGT	2 cut(s)	24, 993
AgsI	TTSAA	9 cut(s)	64, 173, 490, 649, 665, 709, 733, 868, 1118
AjiI	CACGTC	2 cut(s)	25, 958
AjnI	CCWGG	1 cut(s)	537
AleI	CACNNNNGTG	1 cut(s)	88
AluBI	AGCT	9 cut(s)	35, 103, 185, 374, 424, 749, 893, 982, 1051
AluI	AGCT	9 cut(s)	35, 103, 185, 374, 424, 749, 893, 982, 1051
Alw21I	GWGCWC	2 cut(s)	204, 426
Alw26I	GTCTC	1 cut(s)	431
Alw44I	GTGCAC	1 cut(s)	200
AlwI	GGATC	3 cut(s)	362, 616, 629
Aor13HI	TCCGGA	1 cut(s)	524
AoxI	GGCC	2 cut(s)	193, 513
ApaLI	GTGCAC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	894
AspLEI	GCGC	2 cut(s)	216, 963
AspS9I	GGNCC	1 cut(s)	1107
AsuHPI	GGTGA	4 cut(s)	170, 734, 820, 1024
AvaII	GGWCC	1 cut(s)	1107
BaeGI	GKGCMC	1 cut(s)	204
BalI	TGGCCA	2 cut(s)	195, 515
BamHI	GGATCC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	426
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	204, 426
BccI	CCATC	3 cut(s)	445, 997, 1100
BciT130I	CCWGG	1 cut(s)	539
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	309, 618
BfuAI	ACCTGC	1 cut(s)	710
BmcAI	AGTACT	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	1107
BmgBI	CACGTC	2 cut(s)	25, 958
BmgT120I	GGNCC	1 cut(s)	1107
BmiI	GGNNCC	4 cut(s)	314, 333, 623, 1109
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	742
BoxI	GACNNNNGTC	1 cut(s)	906
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	2 cut(s)	729, 1079
BpuEI	CTTGAG	2 cut(s)	71, 749
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	130, 386
BsaWI	WCCGGW	3 cut(s)	151, 524, 1016
Bsc4I	CCNNNNNNNGG	3 cut(s)	631, 905, 1097
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	2 cut(s)	196, 516
Bse3DI	GCAATG	2 cut(s)	366, 714
Bse8I	GATNNNNATC	1 cut(s)	477
BseAI	TCCGGA	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	130, 386
BseGI	GGATG	1 cut(s)	456
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	631, 905, 1097
BseMI	GCAATG	2 cut(s)	366, 714
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	2 cut(s)	196, 516
BseRI	GAGGAG	2 cut(s)	305, 962
BseSI	GKGCMC	1 cut(s)	204
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	2 cut(s)	114, 426
Bsh1236I	CGCG	1 cut(s)	963
BshFI	GGCC	2 cut(s)	195, 515
BsiHKAI	GWGCWC	2 cut(s)	204, 426
BsiSI	CCGG	5 cut(s)	152, 205, 525, 692, 1017
BslFI	GGGAC	2 cut(s)	35, 1093
BslI	CCNNNNNNNGG	3 cut(s)	631, 905, 1097
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	2 cut(s)	35, 1093
BsmI	GAATGC	1 cut(s)	866
BsnI	GGCC	2 cut(s)	195, 515
Bsp1286I	GDGCHC	2 cut(s)	204, 426
Bsp13I	TCCGGA	1 cut(s)	524
Bsp143I	GATC	3 cut(s)	292, 367, 621
Bsp19I	CCATGG	2 cut(s)	130, 386
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	2 cut(s)	195, 515
BspCNI	CTCAG	1 cut(s)	475
BspEI	TCCGGA	1 cut(s)	524
BspFNI	CGCG	1 cut(s)	963
BspLI	GGNNCC	4 cut(s)	314, 333, 623, 1109
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	3 cut(s)	362, 616, 629
BspQI	GCTCTTC	1 cut(s)	989
BsrDI	GCAATG	2 cut(s)	366, 714
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	196, 516
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	130, 386
BssMI	GATC	3 cut(s)	292, 367, 621
BssT1I	CCWWGG	2 cut(s)	130, 386
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	6 cut(s)	166, 303, 613, 658, 800, 905
Bst6I	CTCTTC	3 cut(s)	276, 989, 1015
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	2 cut(s)	483, 1128
BstDSI	CCRYGG	2 cut(s)	130, 386
BstEII	GGTNACC	1 cut(s)	1012
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstF5I	GGATG	1 cut(s)	456
BstFNI	CGCG	1 cut(s)	963
BstHHI	GCGC	2 cut(s)	216, 963
BstKTI	GATC	3 cut(s)	295, 370, 624
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	3 cut(s)	292, 367, 621
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	2 cut(s)	343, 997
BstPAI	GACNNNNGTC	1 cut(s)	906
BstPI	GGTNACC	1 cut(s)	1012
BstSCI	CCNGG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	1 cut(s)	963
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	195, 515
BtgI	CCRYGG	2 cut(s)	130, 386
BtrI	CACGTC	2 cut(s)	25, 958
BtsCI	GGATG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	523, 910
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	1 cut(s)	557
CfoI	GCGC	2 cut(s)	216, 963
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	1107
CsiI	ACCWGGT	1 cut(s)	537
Csp6I	GTAC	4 cut(s)	167, 224, 603, 1078
CviQI	GTAC	4 cut(s)	167, 224, 603, 1078
DdeI	CTNAG	2 cut(s)	483, 1128
DpnI	GATC	3 cut(s)	294, 369, 623
DpnII	GATC	3 cut(s)	292, 367, 621
EaeI	YGGCCR	2 cut(s)	193, 513
Eam1104I	CTCTTC	3 cut(s)	276, 989, 1015
EarI	CTCTTC	3 cut(s)	276, 989, 1015
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	130, 386
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	1107
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	2 cut(s)	896, 993
Eco91I	GGTNACC	1 cut(s)	1012
EcoICRI	GAGCTC	1 cut(s)	424
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoO109I	RGGNCCY	1 cut(s)	1107
EcoO65I	GGTNACC	1 cut(s)	1012
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	130, 386
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	130, 386
FalI	AAGNNNNNCTT	4 cut(s)	548, 580, 971, 1003
FaqI	GGGAC	2 cut(s)	35, 1093
FauNDI	CATATG	1 cut(s)	289
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	426
FspBI	CTAG	2 cut(s)	309, 618
GlaI	GCGC	2 cut(s)	215, 962
GsaI	CCCAGC	1 cut(s)	185
GsuI	CTGGAG	2 cut(s)	729, 1079
HaeIII	GGCC	2 cut(s)	195, 515
HapII	CCGG	5 cut(s)	152, 205, 525, 692, 1017
HhaI	GCGC	2 cut(s)	216, 963
Hin6I	GCGC	2 cut(s)	214, 961
HinP1I	GCGC	2 cut(s)	214, 961
HincII	GTYRAC	2 cut(s)	589, 834
HindII	GTYRAC	2 cut(s)	589, 834
HindIII	AAGCTT	1 cut(s)	1049
HinfI	GANTC	4 cut(s)	5, 262, 521, 965
HpaII	CCGG	5 cut(s)	152, 205, 525, 692, 1017
HphI	GGTGA	4 cut(s)	170, 734, 820, 1024
Hpy166II	GTNNAC	4 cut(s)	202, 226, 589, 834
Hpy188I	TCNGA	2 cut(s)	336, 876
Hpy188III	TCNNGA	8 cut(s)	70, 266, 482, 525, 662, 766, 899, 1058
Hpy8I	GTNNAC	4 cut(s)	202, 226, 589, 834
Hpy99I	CGWCG	1 cut(s)	857
HpyAV	CCTTC	2 cut(s)	862, 1030
HpyCH4III	ACNGT	6 cut(s)	166, 303, 613, 658, 800, 905
HpyCH4IV	ACGT	3 cut(s)	24, 591, 957
HpyCH4V	TGCA	7 cut(s)	95, 202, 443, 555, 654, 719, 829
HpyF3I	CTNAG	2 cut(s)	483, 1128
HpySE526I	ACGT	3 cut(s)	24, 591, 957
HspAI	GCGC	2 cut(s)	214, 961
Kpn2I	TCCGGA	1 cut(s)	524
Kzo9I	GATC	3 cut(s)	292, 367, 621
LguI	GCTCTTC	1 cut(s)	989
LmnI	GCTCC	1 cut(s)	318
LweI	GCATC	1 cut(s)	742
MabI	ACCWGGT	1 cut(s)	537
MaeI	CTAG	2 cut(s)	309, 618
MaeII	ACGT	3 cut(s)	24, 591, 957
MaeIII	GTNAC	6 cut(s)	81, 160, 342, 352, 808, 1012
MalI	GATC	3 cut(s)	294, 369, 623
MboI	GATC	3 cut(s)	292, 367, 621
MboII	GAAGA	7 cut(s)	293, 297, 781, 889, 976, 1032, 1087
MflI	RGATCY	1 cut(s)	621
MhlI	GDGCHC	2 cut(s)	204, 426
MlsI	TGGCCA	2 cut(s)	195, 515
MluCI	AATT	4 cut(s)	703, 803, 815, 933
MluNI	TGGCCA	2 cut(s)	195, 515
Mox20I	TGGCCA	2 cut(s)	195, 515
MroI	TCCGGA	1 cut(s)	524
MroXI	GAANNNNTTC	1 cut(s)	894
MscI	TGGCCA	2 cut(s)	195, 515
MseI	TTAA	2 cut(s)	501, 1103
MslI	CAYNNNNRTG	2 cut(s)	88, 998
Msp20I	TGGCCA	2 cut(s)	195, 515
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	5 cut(s)	152, 205, 525, 692, 1017
MspR9I	CCNGG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	866
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	1 cut(s)	963
NcoI	CCATGG	2 cut(s)	130, 386
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	3 cut(s)	292, 367, 621
NlaIV	GGNNCC	4 cut(s)	314, 333, 623, 1109
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	4 cut(s)	81, 160, 808, 1012
NspI	RCATGY	2 cut(s)	343, 997
OliI	CACNNNNGTG	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	710
PciI	ACATGT	1 cut(s)	993
PciSI	GCTCTTC	1 cut(s)	989
PctI	GAATGC	1 cut(s)	866
PdmI	GAANNNNTTC	1 cut(s)	894
PfeI	GAWTC	4 cut(s)	5, 262, 521, 965
PflMI	CCANNNNNTGG	1 cut(s)	905
PpuMI	RGGWCCY	1 cut(s)	1107
PscI	ACATGT	1 cut(s)	993
PshAI	GACNNNNGTC	1 cut(s)	906
Psp124BI	GAGCTC	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	1107
Psp6I	CCWGG	1 cut(s)	537
PspEI	GGTNACC	1 cut(s)	1012
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	4 cut(s)	314, 333, 623, 1109
PspPI	GGNCC	1 cut(s)	1107
PspPPI	RGGWCCY	1 cut(s)	1107
PsuI	RGATCY	1 cut(s)	621
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	4 cut(s)	168, 225, 604, 1079
RsaNI	GTAC	4 cut(s)	167, 224, 603, 1078
RseI	CAYNNNNRTG	2 cut(s)	88, 998
SacI	GAGCTC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	989
SaqAI	TTAA	2 cut(s)	501, 1103
Sau3AI	GATC	3 cut(s)	292, 367, 621
Sau96I	GGNCC	1 cut(s)	1107
ScaI	AGTACT	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	204, 426
SexAI	ACCWGGT	1 cut(s)	537
SfaNI	GCATC	1 cut(s)	742
SinI	GGWCC	1 cut(s)	1107
SmiMI	CAYNNNNRTG	2 cut(s)	88, 998
SmlI	CTYRAG	2 cut(s)	86, 764
SmoI	CTYRAG	2 cut(s)	86, 764
Sse9I	AATT	4 cut(s)	703, 803, 815, 933
SsiI	CCGC	1 cut(s)	600
SspMI	CTAG	2 cut(s)	309, 618
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	130, 386
TaaI	ACNGT	6 cut(s)	166, 303, 613, 658, 800, 905
TaiI	ACGT	3 cut(s)	27, 594, 960
TasI	AATT	4 cut(s)	703, 803, 815, 933
TatI	WGTACW	2 cut(s)	166, 1077
TfiI	GAWTC	4 cut(s)	5, 262, 521, 965
Tru1I	TTAA	2 cut(s)	501, 1103
Tru9I	TTAA	2 cut(s)	501, 1103
TscAI	CASTG	2 cut(s)	523, 910
TseFI	GTSAC	4 cut(s)	81, 160, 808, 1012
Tsp45I	GTSAC	4 cut(s)	81, 160, 808, 1012
TspDTI	ATGAA	7 cut(s)	27, 275, 285, 519, 548, 703, 788
TspRI	CASTG	2 cut(s)	523, 910
Van91I	CCANNNNNTGG	1 cut(s)	905
VneI	GTGCAC	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	1107
XagI	CCTNNNNNAGG	1 cut(s)	629
XapI	RAATTY	1 cut(s)	703
XceI	RCATGY	2 cut(s)	343, 997
XmnI	GAANNNNTTC	1 cut(s)	894
XspI	CTAG	2 cut(s)	309, 618
ZrmI	AGTACT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.