Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Forward (+)

88678214 .. 88679538

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTTGATCCAGCTATTGCAACCCCATGGCAGTTTTTGGGAAATTGGTTCCGAGGGAACGAGCTCACACCCTTTGAGACTGCACATGAGATGGGATTTTGGGAATACGGTGACAAAAACCCTGAATTCAACAGTGTTTTCAATGAAGCAATGGCCAGTGATTCCGGAATGATGAACTTGGTCATCAAAGACTGCAAGCCAATCTTTGAGGGGTTGACTTCTTTAGTTGATGTAGGAGGTGGTACTGGAAAAGTTGCTAGGATCCTTTGTGAGGCTTTCCCCAACTTGAATTGCACAGTTCTTGAACTTCCACAAGTTGTTGCTGACTTGCCGGATAGTGCGAATTTGAAGTTCATTGCAGGTGATATGTTCAATGCTATTCCTCCAGCTGATGCTATTCTGCTCAAGTTAACTTTACATGCTTTGAACGACGAGGAATGCTTGAAGGTTTTGAAGAAATGCATGGAAGCTATTCCAGGCAATGGCCAAGGAAAGGTTATTATCATAGACATTGTGATAAACGAGGAGAAAGAAGAGCACGAAACAACTGAAGCAAAGCTCTTCTTTGACATGTTGATGATGGTTGTGGTGACCGGAAGAGAGAGAAGTGAGAAAGAGTGGGAAAAGCTCTTTCTGGAGGCTGGTTTCAGCAAATACAAGATAACACCCATCTTTGGTTTAAGGTCCATTATTGAAGTTTATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

235

Amino Acids

26.29

Weight (kDa)

4.63

Isoelectric Point (pI)

25.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_2	PF00891	10 - 217	9.5e-51	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	350
AccB7I	CCANNNNNTGG	1 cut(s)	482
AccIII	TCCGGA	1 cut(s)	164
AclWI	GGATC	3 cut(s)	2, 256, 269
AcoI	YGGCCR	2 cut(s)	153, 484
AcsI	RAATTY	2 cut(s)	125, 343
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	4 cut(s)	271, 482, 493, 674
AflIII	ACRYGT	1 cut(s)	570
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	6 cut(s)	14, 64, 389, 470, 559, 628
AluI	AGCT	6 cut(s)	14, 64, 389, 470, 559, 628
Alw21I	GWGCWC	2 cut(s)	66, 540
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	3 cut(s)	2, 256, 269
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	2 cut(s)	153, 484
ApoI	RAATTY	2 cut(s)	125, 343
Asp700I	GAANNNNTTC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	684
AsuHPI	GGTGA	3 cut(s)	122, 374, 601
AvaII	GGWCC	1 cut(s)	684
BalI	TGGCCA	2 cut(s)	155, 486
BamHI	GGATCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	66, 540
BccI	CCATC	3 cut(s)	85, 574, 677
BciT130I	CCWGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	350
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	684
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	2 cut(s)	50, 263
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	1 cut(s)	382
BpmI	CTGGAG	2 cut(s)	369, 656
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	3 cut(s)	26, 52, 487
BsaWI	WCCGGW	2 cut(s)	164, 593
Bsc4I	CCNNNNNNNGG	4 cut(s)	271, 482, 493, 674
Bse1I	ACTGG	2 cut(s)	156, 250
Bse3DI	GCAATG	3 cut(s)	156, 354, 487
BseAI	TCCGGA	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	3 cut(s)	26, 52, 487
BseLI	CCNNNNNNNGG	4 cut(s)	271, 482, 493, 674
BseMI	GCAATG	3 cut(s)	156, 354, 487
BseNI	ACTGG	2 cut(s)	156, 250
BseRI	GAGGAG	1 cut(s)	539
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	155, 486
BsiHKAI	GWGCWC	2 cut(s)	66, 540
BsiSI	CCGG	3 cut(s)	165, 332, 594
BslI	CCNNNNNNNGG	4 cut(s)	271, 482, 493, 674
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	155, 486
Bsp1286I	GDGCHC	2 cut(s)	66, 540
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	7, 261
Bsp19I	CCATGG	1 cut(s)	26
BspANI	GGCC	2 cut(s)	155, 486
BspEI	TCCGGA	1 cut(s)	164
BspLI	GGNNCC	2 cut(s)	50, 263
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	3 cut(s)	2, 256, 269
BspQI	GCTCTTC	2 cut(s)	528, 566
BsrDI	GCAATG	3 cut(s)	156, 354, 487
BsrI	ACTGG	2 cut(s)	156, 250
BssECI	CCNNGG	3 cut(s)	26, 52, 487
BssMI	GATC	2 cut(s)	7, 261
BssT1I	CCWWGG	2 cut(s)	26, 487
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	3 cut(s)	110, 134, 298
Bst6I	CTCTTC	3 cut(s)	528, 566, 592
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	705
BstDSI	CCRYGG	1 cut(s)	26
BstEII	GGTNACC	1 cut(s)	589
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstKTI	GATC	2 cut(s)	10, 264
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	7, 261
BstNI	CCWGG	1 cut(s)	477
BstNSI	RCATGY	2 cut(s)	422, 574
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	155, 486
BtgI	CCRYGG	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	139, 163
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	684
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	5 cut(s)	27, 86, 419, 463, 571
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	705
DpnI	GATC	2 cut(s)	9, 263
DpnII	GATC	2 cut(s)	7, 261
EaeI	YGGCCR	2 cut(s)	153, 484
Eam1104I	CTCTTC	3 cut(s)	528, 566, 592
EarI	CTCTTC	3 cut(s)	528, 566, 592
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	26, 487
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	684
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	570
Eco91I	GGTNACC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	2 cut(s)	26, 487
EcoT22I	ATGCAT	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	2 cut(s)	26, 487
FaeI	CATG	5 cut(s)	30, 89, 422, 466, 574
FaiI	YATR	7 cut(s)	28, 87, 368, 420, 464, 506, 572
FalI	AAGNNNNNCTT	4 cut(s)	188, 220, 548, 580
FatI	CATG	5 cut(s)	26, 85, 418, 462, 570
FriOI	GRGCYC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	258
GsuI	CTGGAG	2 cut(s)	369, 656
HaeIII	GGCC	2 cut(s)	155, 486
HapII	CCGG	3 cut(s)	165, 332, 594
Hin1II	CATG	5 cut(s)	30, 89, 422, 466, 574
HincII	GTYRAC	2 cut(s)	216, 411
HindII	GTYRAC	2 cut(s)	216, 411
HinfI	GANTC	1 cut(s)	161
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	3 cut(s)	165, 332, 594
HphI	GGTGA	3 cut(s)	122, 374, 601
Hpy166II	GTNNAC	2 cut(s)	216, 411
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	3 cut(s)	165, 302, 635
Hpy8I	GTNNAC	2 cut(s)	216, 411
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	3 cut(s)	110, 134, 298
HpyCH4V	TGCA	6 cut(s)	20, 83, 195, 294, 359, 462
HpyF3I	CTNAG	1 cut(s)	705
Hsp92II	CATG	5 cut(s)	30, 89, 422, 466, 574
Kpn2I	TCCGGA	1 cut(s)	164
KspAI	GTTAAC	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	7, 261
LguI	GCTCTTC	2 cut(s)	528, 566
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	110, 589
MalI	GATC	2 cut(s)	9, 263
MboI	GATC	2 cut(s)	7, 261
MboII	GAAGA	4 cut(s)	466, 545, 553, 609
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	66, 540
MlsI	TGGCCA	2 cut(s)	155, 486
MluCI	AATT	4 cut(s)	43, 125, 289, 343
MluNI	TGGCCA	2 cut(s)	155, 486
MnlI	CCTC	8 cut(s)	47, 202, 230, 265, 393, 427, 517, 631
Mox20I	TGGCCA	2 cut(s)	155, 486
Mph1103I	ATGCAT	1 cut(s)	464
MroI	TCCGGA	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	471
MscI	TGGCCA	2 cut(s)	155, 486
MseI	TTAA	2 cut(s)	410, 680
MslI	CAYNNNNRTG	1 cut(s)	575
Msp20I	TGGCCA	2 cut(s)	155, 486
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	3 cut(s)	165, 332, 594
MspR9I	CCNGG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	477
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	2 cut(s)	7, 261
NlaIII	CATG	5 cut(s)	30, 89, 422, 466, 574
NlaIV	GGNNCC	2 cut(s)	50, 263
NmuCI	GTSAC	2 cut(s)	110, 589
NsiI	ATGCAT	1 cut(s)	464
NspI	RCATGY	2 cut(s)	422, 574
PaqCI	CACCTGC	1 cut(s)	350
PciI	ACATGT	1 cut(s)	570
PciSI	GCTCTTC	2 cut(s)	528, 566
PctI	GAATGC	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	482
PscI	ACATGT	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	475
PspEI	GGTNACC	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	50, 263
PspPI	GGNCC	1 cut(s)	684
PsuI	RGATCY	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	575
SacI	GAGCTC	1 cut(s)	66
SapI	GCTCTTC	2 cut(s)	528, 566
SaqAI	TTAA	2 cut(s)	410, 680
Sau3AI	GATC	2 cut(s)	7, 261
Sau96I	GGNCC	1 cut(s)	684
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	2 cut(s)	66, 540
SfaNI	GCATC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	4 cut(s)	43, 125, 289, 343
SspMI	CTAG	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	2 cut(s)	26, 487
TaaI	ACNGT	3 cut(s)	110, 134, 298
TasI	AATT	4 cut(s)	43, 125, 289, 343
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	410, 680
Tru9I	TTAA	2 cut(s)	410, 680
TscAI	CASTG	2 cut(s)	139, 163
TseFI	GTSAC	2 cut(s)	110, 589
Tsp45I	GTSAC	2 cut(s)	110, 589
TspDTI	ATGAA	3 cut(s)	159, 188, 343
TspRI	CASTG	2 cut(s)	139, 163
Van91I	CCANNNNNTGG	1 cut(s)	482
VpaK11BI	GGWCC	1 cut(s)	684
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	2 cut(s)	125, 343
XceI	RCATGY	2 cut(s)	422, 574
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.