Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Forward (+)

29212197 .. 29213709

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAGGGCGATGAAGCAAGAGATTTGTTTGGAGCACAGTCCCATTTGTACAAGCATGTATTCAACTTCATAACTTCTATGTCGCTCAAGTGTGTAGTGCAGCTCGGCATACCGGACATAATTGACCGCCACGGACAACCCATTACTCTACCTGACTTGGTCACAGCACTTCAGATCCACCCGGCTAAAACCGGTAATGTGCACCGGCTCATGCGCCTCATGGTGCACTCCGGCTTCTTTGCACGAAATCAAGTTCCTAAAAATCATGGAGAAGCAGATGAAGGAGAAGAAGAGGCGTATGATCTCACACCGTCTTCTAGGCTCCTCCTGAAAGACAAAGTACCCAGCTTGTCTCCCTTCGTTCTGGGGATGCTCGATCCAGCTCTCGCAGCACCGTGGCAGTTCCTCGGAAACTGGTTCCGAGGAACCGAGGTCACGCCTTTCGAGAGCGCTCATGGGATGGGGTTTTGGGAATACGGGGAAGGGAACCCCGAATTCAACAGTCTTTTCAATAAGGCAATGGCTAGTGATTCTGGAATGATGAACTTGGTGATTAGAGATTGCAAGCCAATCTTTGATGGGTTGAGTTCATTGGTTGATGTTGGTGGCGGGACTGGAAAAGTTGCTAGGATTCTCTGTGACGCTTTCCCTCAACTGAAATGCACAGTTCTTGAACTTCCACACGTTGTTGCTGATTTGCCAGACGGTGAGAATTTGAAGTTTGTTGGAGGAGATATGTTCCAGGGTATCCCTCCAGCGGATGCTGTTTTCCTCAAGCTGACTTTGCATGCTCTGAGCGATGAGGACTGCTTGAAGGTTTTGAAGAAATGCAGGGAAGCAATTGCAAGCAATGGCCAAGGGAAAGTTATAATCATAGACATAGTGATAAACGAAGAGAAAGATGAGCATGAAATAACCGAAGCAAAGCTCTTGTTTGATCTGCTGATGATGGTTGTGGTCACTGGAAGAGAGAGGAGCGAGAAAGACTGGAAAAAGCTCTTCCTGGAGGCTGGTTTCAGCAGCTACAAGGTGACACCAATATTTGGTTTGAAATCCCTCATTGAAGTTTTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

359

Amino Acids

39.63

Weight (kDa)

5.26

Isoelectric Point (pI)

26.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	869
AccB7I	CCANNNNNTGG	1 cut(s)	1043
AciI	CCGC	3 cut(s)	127, 609, 758
AclWI	GGATC	2 cut(s)	169, 371
AcoI	YGGCCR	1 cut(s)	853
AcsI	RAATTY	2 cut(s)	494, 712
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	50, 342
AfeI	AGCGCT	1 cut(s)	451
AfiI	CCNNNNNNNGG	2 cut(s)	757, 1043
AflIII	ACRYGT	1 cut(s)	682
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	9 cut(s)	64, 499, 511, 674, 718, 814, 823, 1051, 1064
AjnI	CCWGG	2 cut(s)	741, 1002
AluBI	AGCT	7 cut(s)	103, 348, 383, 778, 928, 997, 1023
AluI	AGCT	7 cut(s)	103, 348, 383, 778, 928, 997, 1023
Alw21I	GWGCWC	3 cut(s)	37, 204, 228
Alw26I	GTCTC	1 cut(s)	357
Alw44I	GTGCAC	2 cut(s)	200, 224
AlwI	GGATC	2 cut(s)	169, 371
Aor51HI	AGCGCT	1 cut(s)	451
AoxI	GGCC	1 cut(s)	853
ApaLI	GTGCAC	2 cut(s)	200, 224
ApeKI	GCWGC	3 cut(s)	100, 389, 1020
ApoI	RAATTY	2 cut(s)	494, 712
AsiGI	ACCGGT	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	1068
AspLEI	GCGC	2 cut(s)	216, 452
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	562, 719, 1042
BaeGI	GKGCMC	2 cut(s)	204, 228
BalI	TGGCCA	1 cut(s)	855
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	3 cut(s)	37, 204, 228
BbvI	GCAGC	3 cut(s)	112, 401, 1032
BccI	CCATC	3 cut(s)	454, 572, 943
BciT130I	CCWGG	2 cut(s)	743, 1004
BciVI	GTATCC	1 cut(s)	758
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	3 cut(s)	318, 525, 627
BfoI	RGCGCY	1 cut(s)	453
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	3 cut(s)	101, 390, 1021
BlsI	GCNGC	3 cut(s)	102, 391, 1022
Bme1390I	CCNGG	3 cut(s)	182, 743, 1004
BmiI	GGNNCC	4 cut(s)	323, 419, 427, 488
BmrFI	CCNGG	3 cut(s)	182, 743, 1004
BmsI	GCATC	2 cut(s)	360, 751
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	2 cut(s)	738, 1025
BpuEI	CTTGAG	2 cut(s)	71, 758
BpuMI	CCSGG	1 cut(s)	182
BsaJI	CCNNGG	7 cut(s)	130, 395, 406, 421, 429, 742, 856
BsaWI	WCCGGW	2 cut(s)	112, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	757, 1043
Bse118I	RCCGGY	2 cut(s)	191, 204
Bse1I	ACTGG	4 cut(s)	419, 619, 967, 992
Bse3DI	GCAATG	2 cut(s)	525, 856
BseBI	CCWGG	2 cut(s)	743, 1004
BseDI	CCNNGG	7 cut(s)	130, 395, 406, 421, 429, 742, 856
BseGI	GGATG	3 cut(s)	375, 465, 766
BseLI	CCNNNNNNNGG	2 cut(s)	757, 1043
BseMI	GCAATG	2 cut(s)	525, 856
BseMII	CTCAG	1 cut(s)	785
BseNI	ACTGG	4 cut(s)	419, 619, 967, 992
BseRI	GAGGAG	3 cut(s)	314, 744, 988
BseSI	GKGCMC	2 cut(s)	204, 228
BseXI	GCAGC	3 cut(s)	112, 401, 1032
BseYI	CCCAGC	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	855
BshTI	ACCGGT	1 cut(s)	191
BsiHKAI	GWGCWC	3 cut(s)	37, 204, 228
BsiSI	CCGG	5 cut(s)	113, 182, 192, 205, 231
BslFI	GGGAC	2 cut(s)	25, 625
BslI	CCNNNNNNNGG	2 cut(s)	757, 1043
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	2 cut(s)	25, 625
BsnI	GGCC	1 cut(s)	855
Bsp1286I	GDGCHC	3 cut(s)	37, 204, 228
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	174, 301, 376, 937
BspACI	CCGC	3 cut(s)	127, 609, 758
BspANI	GGCC	1 cut(s)	855
BspCNI	CTCAG	1 cut(s)	786
BspLI	GGNNCC	4 cut(s)	323, 419, 427, 488
BspPI	GGATC	2 cut(s)	169, 371
BspQI	GCTCTTC	1 cut(s)	1004
BsrDI	GCAATG	2 cut(s)	525, 856
BsrFI	RCCGGY	2 cut(s)	191, 204
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	4 cut(s)	419, 619, 967, 992
BssAI	RCCGGY	2 cut(s)	191, 204
BssECI	CCNNGG	7 cut(s)	130, 395, 406, 421, 429, 742, 856
BssMI	GATC	4 cut(s)	174, 301, 376, 937
BssT1I	CCWWGG	1 cut(s)	856
Bst2UI	CCWGG	2 cut(s)	743, 1004
Bst4CI	ACNGT	6 cut(s)	39, 312, 396, 503, 667, 707
Bst6I	CTCTTC	4 cut(s)	285, 888, 961, 1004
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	566, 789, 847
BstDEI	CTNAG	1 cut(s)	794
BstDSI	CCRYGG	2 cut(s)	130, 395
BstF5I	GGATG	3 cut(s)	375, 465, 766
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	2 cut(s)	216, 452
BstKTI	GATC	4 cut(s)	177, 304, 379, 940
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	4 cut(s)	174, 301, 376, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 784
BstNI	CCWGG	2 cut(s)	743, 1004
BstNSI	RCATGY	2 cut(s)	59, 791
BstSCI	CCNGG	3 cut(s)	180, 741, 1002
BstSLI	GKGCMC	2 cut(s)	204, 228
BstV1I	GCAGC	3 cut(s)	112, 401, 1032
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	855
BtgI	CCRYGG	2 cut(s)	130, 395
BtgZI	GCGATG	2 cut(s)	24, 813
BtsCI	GGATG	3 cut(s)	375, 465, 766
BtsIMutI	CAGTG	1 cut(s)	960
Cac8I	GCNNGC	3 cut(s)	566, 789, 847
CfoI	GCGC	2 cut(s)	216, 452
Cfr10I	RCCGGY	2 cut(s)	191, 204
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	2 cut(s)	49, 341
CspAI	ACCGGT	1 cut(s)	191
CviAII	CATG	7 cut(s)	56, 211, 220, 266, 455, 788, 908
CviQI	GTAC	2 cut(s)	49, 341
DdeI	CTNAG	1 cut(s)	794
DpnI	GATC	4 cut(s)	176, 303, 378, 939
DpnII	GATC	4 cut(s)	174, 301, 376, 937
EaeI	YGGCCR	1 cut(s)	853
Eam1104I	CTCTTC	4 cut(s)	285, 888, 961, 1004
EarI	CTCTTC	4 cut(s)	285, 888, 961, 1004
Eco130I	CCWWGG	1 cut(s)	856
Eco47III	AGCGCT	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	2 cut(s)	741, 1002
EcoT14I	CCWWGG	1 cut(s)	856
ErhI	CCWWGG	1 cut(s)	856
FaeI	CATG	7 cut(s)	59, 214, 223, 269, 458, 791, 911
FalI	AAGNNNNNCTT	3 cut(s)	557, 589, 1056
FaqI	GGGAC	2 cut(s)	25, 625
FatI	CATG	7 cut(s)	55, 210, 219, 265, 454, 787, 907
FauI	CCCGC	1 cut(s)	602
Fnu4HI	GCNGC	3 cut(s)	101, 390, 1021
FokI	GGATG	3 cut(s)	382, 472, 773
Fsp4HI	GCNGC	3 cut(s)	101, 390, 1021
FspBI	CTAG	3 cut(s)	318, 525, 627
GlaI	GCGC	2 cut(s)	215, 451
GluI	GCNGC	3 cut(s)	101, 390, 1021
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	2 cut(s)	738, 1025
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	855
HapII	CCGG	5 cut(s)	113, 182, 192, 205, 231
HgaI	GACGC	1 cut(s)	650
HhaI	GCGC	2 cut(s)	216, 452
Hin1II	CATG	7 cut(s)	59, 214, 223, 269, 458, 791, 911
Hin6I	GCGC	2 cut(s)	214, 450
HinP1I	GCGC	2 cut(s)	214, 450
HinfI	GANTC	2 cut(s)	530, 631
HpaII	CCGG	5 cut(s)	113, 182, 192, 205, 231
HphI	GGTGA	3 cut(s)	562, 719, 1042
Hpy166II	GTNNAC	2 cut(s)	202, 226
Hpy188I	TCNGA	4 cut(s)	174, 410, 422, 795
Hpy188III	TCNNGA	4 cut(s)	328, 445, 534, 671
Hpy8I	GTNNAC	2 cut(s)	202, 226
HpyAV	CCTTC	4 cut(s)	275, 367, 476, 808
HpyCH4III	ACNGT	6 cut(s)	39, 312, 396, 503, 667, 707
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	9 cut(s)	100, 202, 226, 242, 564, 663, 787, 831, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 784
HpyF3I	CTNAG	1 cut(s)	794
HpySE526I	ACGT	1 cut(s)	684
Hsp92II	CATG	7 cut(s)	59, 214, 223, 269, 458, 791, 911
HspAI	GCGC	2 cut(s)	214, 450
Kzo9I	GATC	4 cut(s)	174, 301, 376, 937
LguI	GCTCTTC	1 cut(s)	1004
LmnI	GCTCC	3 cut(s)	32, 327, 975
Lsp1109I	GCAGC	3 cut(s)	112, 401, 1032
LweI	GCATC	2 cut(s)	360, 751
MaeI	CTAG	3 cut(s)	318, 525, 627
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	5 cut(s)	160, 433, 638, 958, 1030
MalI	GATC	4 cut(s)	176, 303, 378, 939
MboI	GATC	4 cut(s)	174, 301, 376, 937
MboII	GAAGA	7 cut(s)	299, 302, 306, 835, 905, 978, 991
MfeI	CAATTG	1 cut(s)	840
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	3 cut(s)	37, 204, 228
MlsI	TGGCCA	1 cut(s)	855
MluCI	AATT	4 cut(s)	120, 494, 712, 840
MluNI	TGGCCA	1 cut(s)	855
MmeI	TCCRAC	1 cut(s)	706
Mox20I	TGGCCA	1 cut(s)	855
MroXI	GAANNNNTTC	1 cut(s)	1068
MscI	TGGCCA	1 cut(s)	855
Msp20I	TGGCCA	1 cut(s)	855
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	5 cut(s)	113, 182, 192, 205, 231
MspR9I	CCNGG	3 cut(s)	182, 743, 1004
MunI	CAATTG	1 cut(s)	840
MvaI	CCWGG	2 cut(s)	743, 1004
MwoI	GCNNNNNNNGC	2 cut(s)	389, 784
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	4 cut(s)	174, 301, 376, 937
NlaIII	CATG	7 cut(s)	59, 214, 223, 269, 458, 791, 911
NlaIV	GGNNCC	4 cut(s)	323, 419, 427, 488
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	5 cut(s)	160, 433, 638, 958, 1030
NspI	RCATGY	2 cut(s)	59, 791
PaeI	GCATGC	1 cut(s)	791
PciSI	GCTCTTC	1 cut(s)	1004
PdmI	GAANNNNTTC	1 cut(s)	1068
PfeI	GAWTC	2 cut(s)	530, 631
PflFI	GACNNNGTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	1043
PfoI	TCCNGGA	1 cut(s)	1002
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	102, 391, 1022
PsiI	TTATAA	1 cut(s)	869
Psp6I	CCWGG	2 cut(s)	741, 1002
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	2 cut(s)	741, 1002
PspN4I	GGNNCC	4 cut(s)	323, 419, 427, 488
PsuI	RGATCY	1 cut(s)	174
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	2 cut(s)	50, 342
RsaNI	GTAC	2 cut(s)	49, 341
SapI	GCTCTTC	1 cut(s)	1004
SatI	GCNGC	3 cut(s)	101, 390, 1021
Sau3AI	GATC	4 cut(s)	174, 301, 376, 937
ScrFI	CCNGG	3 cut(s)	182, 743, 1004
SduI	GDGCHC	3 cut(s)	37, 204, 228
SfaNI	GCATC	2 cut(s)	360, 751
SmlI	CTYRAG	2 cut(s)	86, 773
SmoI	CTYRAG	2 cut(s)	86, 773
SphI	GCATGC	1 cut(s)	791
Sse9I	AATT	4 cut(s)	120, 494, 712, 840
SsiI	CCGC	3 cut(s)	127, 609, 758
SspI	AATATT	1 cut(s)	1041
SspMI	CTAG	3 cut(s)	318, 525, 627
StyD4I	CCNGG	3 cut(s)	180, 741, 1002
StyI	CCWWGG	1 cut(s)	856
TaaI	ACNGT	6 cut(s)	39, 312, 396, 503, 667, 707
TaiI	ACGT	1 cut(s)	687
TaqI	TCGA	2 cut(s)	375, 444
TasI	AATT	4 cut(s)	120, 494, 712, 840
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	530, 631
TscAI	CASTG	1 cut(s)	967
TseFI	GTSAC	5 cut(s)	160, 433, 638, 958, 1030
TseI	GCWGC	3 cut(s)	100, 389, 1020
Tsp45I	GTSAC	5 cut(s)	160, 433, 638, 958, 1030
TspDTI	ATGAA	6 cut(s)	27, 58, 294, 557, 579, 924
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	967
Tth111I	GACNNNGTC	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	1043
VneI	GTGCAC	2 cut(s)	200, 224
XapI	RAATTY	2 cut(s)	494, 712
XceI	RCATGY	2 cut(s)	59, 791
XmnI	GAANNNNTTC	1 cut(s)	1068
XspI	CTAG	3 cut(s)	318, 525, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.