Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Forward (+)

29203995 .. 29204879

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGGGAGATGAAGCAAGAGATTTGTTTGGAGCACAGTCCCATTTGTACAAGCATGTATTCAGCTTCATAACTTCTATGTCGCTCAAGTGTGTAGTGCAGCTCGGCATACCGGACATAATTGACCGCCACGGACAACCCATTACTCTACCTGACTTGGTCACAGCACTTCAGATCCACCCGGCTAAAACCGGTAATGTGCACCGGCTCATGCGCCTCATGGTGCACTCCGGCTTCTTTGCACGAAAACAAGTTCCTAGAAATCATGGAGAAGCAGATGAAGGAGAAGAAGAGGCGTATGATCTCACACCGTCTTCTAGGCTCCTCCTGAAAGACAAAGTACCCAGCTTGTCTCCCTTCGTTCTGGCGATGATCGATCCAGCTTCCGCAGCACCGTGGCAGTTCCTCGGAAACTGGTTTGGAGGAAGCGAGGTCACGCCTTTCGAGAGCGCTCATGGGATGGGGTTTTGGGAATACGGGGAACGAAACCCCGAATACAGCAGTCTTTTCAATAAGTCAATGGCTAGTGATTCTGGAATGGTGAACTTGGTGATTAGAGATTGCAAGCCAATCTTTGATGGGTTGAGTTCATTGGTTGATGTTGGTGGTGGGACTGGAAAAGTCGCTAGGATTCTCTATGACGCTTTCCCTCGACTGAAATGCACAGTTCTTGAACTTCCACACGTTGTTGCTGATTTGCCAGACAGTGAAAATTTGAAGTTTGTTGGAGGAGACATGTTCCAGCGTATCCCTCCAGCGGATGCTGTTTTCCTCAAGGGTAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

263

Amino Acids

28.84

Weight (kDa)

5.57

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	127, 387, 758
AclWI	GGATC	2 cut(s)	169, 371
AcsI	RAATTY	1 cut(s)	712
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	50, 342
AfeI	AGCGCT	1 cut(s)	451
AfiI	CCNNNNNNNGG	1 cut(s)	757
AflIII	ACRYGT	2 cut(s)	682, 735
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	511, 674, 718
AluBI	AGCT	4 cut(s)	66, 103, 348, 383
AluI	AGCT	4 cut(s)	66, 103, 348, 383
Alw21I	GWGCWC	3 cut(s)	37, 204, 228
Alw26I	GTCTC	2 cut(s)	357, 726
Alw44I	GTGCAC	2 cut(s)	200, 224
AlwI	GGATC	2 cut(s)	169, 371
Aor51HI	AGCGCT	1 cut(s)	451
ApaLI	GTGCAC	2 cut(s)	200, 224
ApeKI	GCWGC	2 cut(s)	100, 389
ApoI	RAATTY	1 cut(s)	712
AsiGI	ACCGGT	1 cut(s)	191
AspLEI	GCGC	2 cut(s)	216, 452
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	553, 562
BaeGI	GKGCMC	2 cut(s)	204, 228
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	3 cut(s)	37, 204, 228
BbvI	GCAGC	2 cut(s)	112, 401
BccI	CCATC	2 cut(s)	454, 572
BcgI	CGANNNNNNTGC	2 cut(s)	642, 676
BciVI	GTATCC	1 cut(s)	758
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	357, 726
BfaI	CTAG	4 cut(s)	258, 318, 525, 627
BfoI	RGCGCY	1 cut(s)	453
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	2 cut(s)	101, 390
BlsI	GCNGC	2 cut(s)	102, 391
Bme1390I	CCNGG	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	751
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	738
BpuEI	CTTGAG	2 cut(s)	71, 758
BpuMI	CCSGG	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	130, 395, 406
BsaWI	WCCGGW	2 cut(s)	112, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	757
Bse118I	RCCGGY	2 cut(s)	191, 204
Bse1I	ACTGG	2 cut(s)	419, 619
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	130, 395, 406
BseGI	GGATG	2 cut(s)	465, 766
BseLI	CCNNNNNNNGG	1 cut(s)	757
BseNI	ACTGG	2 cut(s)	419, 619
BseRI	GAGGAG	2 cut(s)	314, 744
BseSI	GKGCMC	2 cut(s)	204, 228
BseXI	GCAGC	2 cut(s)	112, 401
BseYI	CCCAGC	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	375
BsiHKAI	GWGCWC	3 cut(s)	37, 204, 228
BsiSI	CCGG	5 cut(s)	113, 182, 192, 205, 231
BslFI	GGGAC	2 cut(s)	25, 625
BslI	CCNNNNNNNGG	1 cut(s)	757
BsmAI	GTCTC	2 cut(s)	357, 726
BsmFI	GGGAC	2 cut(s)	25, 625
Bsp1286I	GDGCHC	3 cut(s)	37, 204, 228
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	174, 301, 372, 376
BspACI	CCGC	3 cut(s)	127, 387, 758
BspDI	ATCGAT	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	2 cut(s)	169, 371
BsrFI	RCCGGY	2 cut(s)	191, 204
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	419, 619
BssAI	RCCGGY	2 cut(s)	191, 204
BssECI	CCNNGG	3 cut(s)	130, 395, 406
BssMI	GATC	4 cut(s)	174, 301, 372, 376
Bst4CI	ACNGT	5 cut(s)	39, 312, 396, 667, 707
Bst6I	CTCTTC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	566
BstDSI	CCRYGG	2 cut(s)	130, 395
BstF5I	GGATG	2 cut(s)	465, 766
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	2 cut(s)	216, 452
BstKTI	GATC	4 cut(s)	177, 304, 375, 379
BstMAI	GTCTC	2 cut(s)	357, 726
BstMBI	GATC	4 cut(s)	174, 301, 372, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNSI	RCATGY	2 cut(s)	59, 739
BstSCI	CCNGG	1 cut(s)	180
BstSLI	GKGCMC	2 cut(s)	204, 228
BstV1I	GCAGC	2 cut(s)	112, 401
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	758
BsuTUI	ATCGAT	1 cut(s)	375
BtgI	CCRYGG	2 cut(s)	130, 395
BtgZI	GCGATG	1 cut(s)	383
BtsCI	GGATG	2 cut(s)	465, 766
BtsIMutI	CAGTG	1 cut(s)	712
Cac8I	GCNNGC	1 cut(s)	566
CfoI	GCGC	2 cut(s)	216, 452
Cfr10I	RCCGGY	2 cut(s)	191, 204
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	2 cut(s)	49, 341
CspAI	ACCGGT	1 cut(s)	191
CviAII	CATG	6 cut(s)	56, 211, 220, 266, 455, 736
CviQI	GTAC	2 cut(s)	49, 341
DpnI	GATC	4 cut(s)	176, 303, 374, 378
DpnII	GATC	4 cut(s)	174, 301, 372, 376
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco47III	AGCGCT	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	155
FaeI	CATG	6 cut(s)	59, 214, 223, 269, 458, 739
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	2 cut(s)	25, 625
FatI	CATG	6 cut(s)	55, 210, 219, 265, 454, 735
Fnu4HI	GCNGC	2 cut(s)	101, 390
FokI	GGATG	2 cut(s)	472, 773
Fsp4HI	GCNGC	2 cut(s)	101, 390
FspBI	CTAG	4 cut(s)	258, 318, 525, 627
GlaI	GCGC	2 cut(s)	215, 451
GluI	GCNGC	2 cut(s)	101, 390
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	738
HaeII	RGCGCY	1 cut(s)	453
HapII	CCGG	5 cut(s)	113, 182, 192, 205, 231
HgaI	GACGC	1 cut(s)	650
HhaI	GCGC	2 cut(s)	216, 452
Hin1II	CATG	6 cut(s)	59, 214, 223, 269, 458, 739
Hin6I	GCGC	2 cut(s)	214, 450
HinP1I	GCGC	2 cut(s)	214, 450
HinfI	GANTC	2 cut(s)	530, 631
HpaII	CCGG	5 cut(s)	113, 182, 192, 205, 231
HphI	GGTGA	2 cut(s)	553, 562
Hpy166II	GTNNAC	3 cut(s)	202, 226, 544
Hpy188I	TCNGA	2 cut(s)	174, 410
Hpy188III	TCNNGA	4 cut(s)	328, 445, 534, 671
Hpy8I	GTNNAC	3 cut(s)	202, 226, 544
HpyAV	CCTTC	2 cut(s)	275, 367
HpyCH4III	ACNGT	5 cut(s)	39, 312, 396, 667, 707
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	6 cut(s)	100, 202, 226, 242, 564, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpySE526I	ACGT	1 cut(s)	684
Hsp92II	CATG	6 cut(s)	59, 214, 223, 269, 458, 739
HspAI	GCGC	2 cut(s)	214, 450
Kzo9I	GATC	4 cut(s)	174, 301, 372, 376
LmnI	GCTCC	2 cut(s)	32, 327
Lsp1109I	GCAGC	2 cut(s)	112, 401
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	4 cut(s)	258, 318, 525, 627
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	2 cut(s)	160, 433
MalI	GATC	4 cut(s)	176, 303, 374, 378
MboI	GATC	4 cut(s)	174, 301, 372, 376
MboII	GAAGA	3 cut(s)	299, 302, 306
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	3 cut(s)	37, 204, 228
MluCI	AATT	2 cut(s)	120, 712
MmeI	TCCRAC	1 cut(s)	706
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	5 cut(s)	113, 182, 192, 205, 231
MspR9I	CCNGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	4 cut(s)	174, 301, 372, 376
NlaIII	CATG	6 cut(s)	59, 214, 223, 269, 458, 739
NlaIV	GGNNCC	1 cut(s)	323
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	2 cut(s)	160, 433
NspI	RCATGY	2 cut(s)	59, 739
PciI	ACATGT	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	530, 631
PflFI	GACNNNGTC	1 cut(s)	158
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	102, 391
PscI	ACATGT	1 cut(s)	735
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	174
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	2 cut(s)	50, 342
RsaNI	GTAC	2 cut(s)	49, 341
SatI	GCNGC	2 cut(s)	101, 390
Sau3AI	GATC	4 cut(s)	174, 301, 372, 376
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	3 cut(s)	37, 204, 228
SetI	ASST	7 cut(s)	68, 105, 154, 350, 385, 435, 687
SfaNI	GCATC	1 cut(s)	751
SmlI	CTYRAG	2 cut(s)	86, 773
SmoI	CTYRAG	2 cut(s)	86, 773
Sse9I	AATT	2 cut(s)	120, 712
SsiI	CCGC	3 cut(s)	127, 387, 758
SspMI	CTAG	4 cut(s)	258, 318, 525, 627
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	5 cut(s)	39, 312, 396, 667, 707
TaiI	ACGT	1 cut(s)	687
TaqI	TCGA	3 cut(s)	375, 444, 652
TasI	AATT	2 cut(s)	120, 712
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	530, 631
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	2 cut(s)	160, 433
TseI	GCWGC	2 cut(s)	100, 389
Tsp45I	GTSAC	2 cut(s)	160, 433
TspDTI	ATGAA	4 cut(s)	27, 58, 294, 579
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	712
Tth111I	GACNNNGTC	1 cut(s)	158
VneI	GTGCAC	2 cut(s)	200, 224
XapI	RAATTY	1 cut(s)	712
XceI	RCATGY	2 cut(s)	59, 739
XspI	CTAG	4 cut(s)	258, 318, 525, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.