Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007335

Physical Location & Seq

Genomic Coordinates Reverse (-)

7260939 .. 7263959

Gene Structure 3021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12270.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGACACAATTAAAGTCCATAATCCAACCCGGCCCAAATCAACTCCCAAAACGAAGCAAATGGGAGTATTTGACTATATGTACTCGGCAAATTCGAACTGAGAAAAACCCTCCTAAAACCCTGATGCTCTCTCTTCGAATTCTCAGAAACCATGGACTCCACCACAAGCTGTTATCCCCTACATCGACCCACATTTCCCACCCCTACACCCTCAGAACCCTCTCTTCCTACACCGATTCCGACGAACCATCCTCCTCCGCCTCCACCACCTCCGATTCCCAATCAGAATCACACTCTCTGGTCACCCAAATCTGTTCCATGGTCTACAAATCCTACTCCCCACAAACCCATTTCAAATCTTCACCCCCAATTCTCAATCTTGACCTAAACCCTGATTCGTTGACCCACGAACACGCCATTTCCGTCGTGGCTTCGCTAGCCGGCGAGGCCGGGTCCATGGTGGCGCTGAGCTTCTTCTACTGGGCTGTTGGTTTCACAAAATTTCGATACTTTATGCGGCTTTACATCTTTTGTGCAATGTCGATTTTCGGCAATGGTAATTTGGAGAGGACCCATGAGGTGGTTCAGTGTATGGTGAGGAGTTTCGCGGAGATTGGGAGGTTTAAAGAGGCTGCCGATATGGTTTTCGATATGCAGAACCAGGGGCTTGTGTTGAGTACTCGGACTTTGAACTGTGTTGTCGGCATTGCTTGCGAAATGGGGCTGATGGAATATGCAGAGAACGTGTTCGATGAAATGTCTGTGAGAGGTGTGTGTCCGGATGGCTTGAGTTTCAAGTGTATGGTTGTTGGGTATTGTCGAAAGGGTGCGGTTATGGAGGTGGATAGGTGGTTGAGTAGGATGATTGAGAGGGGTTTTGTTTTGGATAATGCTAGTTTTACTTTGATTGTGAGTGTGTTTTGCGAGAAGGGTTTCGTGAGTAGAGCGTCTTGGTGTTTCGATAAGATGAGTAAGATGGGGGTGAAGCCGAATTTGGTTAACTTTACGTCTTTGATTCATGGGTTGTGCAAGAGGGGGAGTGTTAAGCAAGCGTTTGAGATGTTGGAGGAGATGGTGAGGAGGGGTTGGAAGCCGAATGTGTATACACATACGGCGTTGATTGATGGGCTGTGCAAGAAAGGGTGGACTGAGAGGGCATTTAGGCTGTTTCTGAAGCTGGTACGGAGTGATAATTACAAACCAAATGTGCATACTTATACTGCGATGATCAGTGGATATTGCAAGGAAGAGAAAATGAGTCGTGCCGAGATGTTGTTGAGCAGAATGAAGGAACAAGAATTAGTTCCTAACGCCTATACGTATACTACTCTCGTTTATGGGCATTGTAAAGCTGGGAATTTCGAAAAAGCATATCAATTGATGGATGTAATGAGTGAAGAAGGATTTGCTCCGAATATATGTACATACAATGCAGTTATGGACTGTCTCTGTAAAAAGGAAAGAGTCCAGGAAGCTTATAAACTAATTAAGAAGGGTTTTCGCAGAGGATTGCAGGCTGATAGAGTCACGTATACCATTTTCATATCTGAGCATTGCAAACAGGCTGATATTAAGGGAGCCCAAGCTTTTTTCAATAAGATGGTCAAAGCGGGATTGGAACCTGATATGCATTCATATACAACTCTGATTGCTGCTTTCTGCAGGCAAAAGAAAATGAAAGAAAGCGAGAAACTTTTTGAGGTAGCTGTAAGGCTTGGCTTGATTCCAACCAAGGAGACTTATACATCTATGATATGTGGGTATTGTAGGGATGGAAATATCGTTTTGGCTGTAAAGTTCTTCCACAGGATGAGTGATCATGGTTGTTCCCCGGATAGCTTTACTTATGGTGCTCTAATAAGTGGGCTCTGCAAGGAGGAGAAACTTGACGAGGCTCGCAAGTTATATGATACCATGATGGACAAGGGGCTGTCGCCCTGTGAAGTAACTAGGTTGACATTAACTCACAAGTATTGCCAAAAAGATGACTATGCCACTGCTATGGTCATCTTAGATAGGCTTGAAAAGAAGTACTGGATCCGCACGGTTAATACATTGGTCAGGAAGCTTTGTTGTGAGAAGAAAGTGGGAATAGCAGCATTGTTCTTTCACAAATTAGTTGATAAGGATCAGAATGTGGATCGTGTGACATTGCAAGCGTTTACGACTGCATGTTACGAGAGTAACAAGTATGCTCTTCTTTCGGATTTGACTGAGAGAATCTCTAAAGGAATTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

747

Amino Acids

84.92

Weight (kDa)

8.95

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	227 - 274	1.9e-06	PPR repeat family
PPR_2	PF13041	297 - 344	3.9e-08	PPR repeat family
PPR_1	PF12854	326 - 359	2.1e-12	PPR repeat
PPR_2	PF13041	330 - 379	2.3e-18	PPR repeat family
PPR	PF01535	335 - 362	7.9e-07	PPR repeat
PPR_3	PF13812	354 - 414	1.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	362 - 390	2.1e-09	PPR repeat
PPR_2	PF13041	371 - 415	1.1e-10	PPR repeat family
PPR_3	PF13812	394 - 441	1.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	398 - 430	1.2e-09	PPR repeat
PPR_2	PF13041	401 - 450	1.9e-16	PPR repeat family
PPR	PF01535	405 - 432	3e-07	PPR repeat
PPR_long	PF17177	424 - 495	3.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	425 - 482	5.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	434 - 464	9.6e-11	PPR repeat
PPR	PF01535	439 - 469	2e-06	PPR repeat
PPR_2	PF13041	441 - 485	9.7e-12	PPR repeat family
PPR_1	PF12854	468 - 497	2.2e-07	PPR repeat
PPR_2	PF13041	471 - 520	7.1e-13	PPR repeat family
PPR_1	PF12854	502 - 535	2.3e-06	PPR repeat
PPR_2	PF13041	507 - 555	7.8e-14	PPR repeat family
PPR_long	PF17177	513 - 675	4.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	538 - 567	5.3e-07	PPR repeat
PPR_2	PF13041	545 - 590	2.1e-10	PPR repeat family
PPR_1	PF12854	573 - 605	1.3e-08	PPR repeat
PPR_2	PF13041	579 - 625	4.5e-16	PPR repeat family
PPR	PF01535	580 - 609	1.1e-07	PPR repeat
PPR_1	PF12854	608 - 639	1.1e-11	PPR repeat
PPR_2	PF13041	614 - 659	3.6e-08	PPR repeat family
PPR	PF01535	614 - 644	5.8e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19890
fragaria_vesca	FvH4_3g12270 FvH4_3g12270 FvH4_3g12270
malus_domestica	MD05G1251800.v1.1
prunus_persica	Prupe.4G111800_v2.0.a1
pyrus_communis	pycom05g22980 pycom10g19560
rosa_chinensis	RchiOBHm_Chr5g0020081 RchiOBHm_Chr7g0211421
rosa_laevigata	RLG00000032497
rosa_multiflora	Rmu_sc0021557.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058120
rosa_rugosa	Rorug05G0056700
rosa_samantha	Rh5AG146800 Rh5BG146300 Rh5CG157900 Rh5DG145800 Rh6CG070300 Rh6DG067500 Rh7AG292200 Rh7CG312200 Rh7DG257000 Rh7DG263700
rosa_wichuraiana	Rw5G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1479
AccB7I	CCANNNNNTGG	1 cut(s)	580
AccI	GTMKAC	4 cut(s)	324, 1103, 1322, 1532
AccII	CGCG	1 cut(s)	608
AccIII	TCCGGA	1 cut(s)	778
AciI	CCGC	6 cut(s)	258, 517, 608, 830, 1610, 2041
AclWI	GGATC	4 cut(s)	2032, 2045, 2136, 2148
AcsI	RAATTY	5 cut(s)	90, 138, 500, 991, 1357
AcuI	CTGAAG	1 cut(s)	1193
AfaI	GTAC	5 cut(s)	82, 679, 1182, 1423, 2033
AfiI	CCNNNNNNNGG	1 cut(s)	580
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	5 cut(s)	355, 691, 796, 1594, 2024
AjnI	CCWGG	2 cut(s)	660, 1467
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
AluBI	AGCT	9 cut(s)	169, 471, 1177, 1352, 1475, 1586, 1706, 1839, 2068
AluI	AGCT	9 cut(s)	169, 471, 1177, 1352, 1475, 1586, 1706, 1839, 2068
Alw21I	GWGCWC	1 cut(s)	1855
Alw26I	GTCTC	2 cut(s)	1451, 1730
AlwI	GGATC	4 cut(s)	2032, 2045, 2136, 2148
Aor13HI	TCCGGA	1 cut(s)	778
AoxI	GGCC	2 cut(s)	31, 447
ApeKI	GCWGC	3 cut(s)	632, 1652, 2096
ApoI	RAATTY	5 cut(s)	90, 138, 500, 991, 1357
Asp700I	GAANNNNTTC	3 cut(s)	746, 932, 1302
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	3 cut(s)	32, 453, 570
AsuC2I	CCSGG	3 cut(s)	30, 451, 1832
AsuHPI	GGTGA	5 cut(s)	295, 354, 607, 994, 1087
AsuII	TTCGAA	3 cut(s)	94, 136, 1362
AsuNHI	GCTAGC	1 cut(s)	436
AvaII	GGWCC	2 cut(s)	453, 570
BamHI	GGATCC	1 cut(s)	2037
BanII	GRGCYC	2 cut(s)	1582, 1869
Bbv12I	GWGCWC	1 cut(s)	1855
BbvI	GCAGC	3 cut(s)	619, 1639, 2108
BceAI	ACGGC	1 cut(s)	1128
BciT130I	CCWGG	2 cut(s)	662, 1469
BclI	TGATCA	2 cut(s)	1227, 1816
BcnI	CCSGG	3 cut(s)	30, 451, 1832
BcoDI	GTCTC	2 cut(s)	1451, 1730
BfaI	CTAG	4 cut(s)	437, 894, 1950, 2239
BfmI	CTRYAG	1 cut(s)	1660
BfoI	RGCGCY	1 cut(s)	467
BglI	GCCNNNNNGGC	1 cut(s)	446
BisI	GCNGC	4 cut(s)	518, 633, 1653, 2097
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	4 cut(s)	519, 634, 1654, 2098
BmcAI	AGTACT	2 cut(s)	679, 2033
Bme1390I	CCNGG	5 cut(s)	30, 451, 662, 1469, 1832
Bme18I	GGWCC	2 cut(s)	453, 570
BmgT120I	GGNCC	3 cut(s)	32, 453, 570
BmiI	GGNNCC	5 cut(s)	454, 572, 1579, 1620, 2039
BmrFI	CCNGG	5 cut(s)	30, 451, 662, 1469, 1832
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	1 cut(s)	114
BmtI	GCTAGC	1 cut(s)	440
BmuI	ACTGGG	1 cut(s)	490
BplI	GAGNNNNNCTC	2 cut(s)	2207, 2239
Bpu1102I	GCTNAGC	1 cut(s)	467
Bpu14I	TTCGAA	3 cut(s)	94, 136, 1362
BpuEI	CTTGAG	1 cut(s)	808
BpuMI	CCSGG	3 cut(s)	30, 451, 1832
BsaAI	YACGTR	2 cut(s)	1320, 1530
BsaBI	GATNNNNATC	1 cut(s)	2127
BsaJI	CCNNGG	6 cut(s)	151, 318, 456, 661, 1731, 1830
BsaWI	WCCGGW	1 cut(s)	778
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	2 cut(s)	485, 2039
Bse3DI	GCAATG	5 cut(s)	543, 559, 705, 1552, 2150
Bse8I	GATNNNNATC	1 cut(s)	2127
BseAI	TCCGGA	1 cut(s)	778
BseBI	CCWGG	2 cut(s)	662, 1469
BseDI	CCNNGG	6 cut(s)	151, 318, 456, 661, 1731, 1830
BseGI	GGATG	6 cut(s)	248, 787, 867, 1390, 1777, 1815
BseJI	GATNNNNATC	1 cut(s)	2127
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	5 cut(s)	543, 559, 705, 1552, 2150
BseMII	CTCAG	7 cut(s)	90, 157, 226, 458, 1140, 1539, 2205
BseNI	ACTGG	2 cut(s)	485, 2039
BseRI	GAGGAG	5 cut(s)	244, 613, 1082, 1093, 1892
BseXI	GCAGC	3 cut(s)	619, 1639, 2108
BseYI	CCCAGC	1 cut(s)	1352
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	2 cut(s)	33, 449
BsiHKAI	GWGCWC	1 cut(s)	1855
BsiSI	CCGG	5 cut(s)	30, 441, 450, 779, 1832
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	2 cut(s)	1451, 1730
BsmI	GAATGC	1 cut(s)	1630
BsnI	GGCC	2 cut(s)	33, 449
Bsp119I	TTCGAA	3 cut(s)	94, 136, 1362
Bsp1286I	GDGCHC	3 cut(s)	1582, 1855, 1869
Bsp13I	TCCGGA	1 cut(s)	778
Bsp1407I	TGTACA	1 cut(s)	1421
Bsp143I	GATC	5 cut(s)	1227, 1816, 2037, 2128, 2140
Bsp1720I	GCTNAGC	1 cut(s)	467
Bsp19I	CCATGG	3 cut(s)	151, 318, 456
BspACI	CCGC	6 cut(s)	258, 517, 608, 830, 1610, 2041
BspANI	GGCC	2 cut(s)	33, 449
BspCNI	CTCAG	7 cut(s)	91, 156, 225, 459, 1141, 1540, 2206
BspEI	TCCGGA	1 cut(s)	778
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	5 cut(s)	454, 572, 1579, 1620, 2039
BspMAI	CTGCAG	1 cut(s)	1664
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	4 cut(s)	2032, 2045, 2136, 2148
BspQI	GCTCTTC	1 cut(s)	2202
BspT104I	TTCGAA	3 cut(s)	94, 136, 1362
BsrDI	GCAATG	5 cut(s)	543, 559, 705, 1552, 2150
BsrFI	RCCGGY	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	1421
BsrI	ACTGG	2 cut(s)	485, 2039
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	6 cut(s)	151, 318, 456, 661, 1731, 1830
BssMI	GATC	5 cut(s)	1227, 1816, 2037, 2128, 2140
BssNAI	GTATAC	3 cut(s)	1104, 1323, 1533
BssT1I	CCWWGG	4 cut(s)	151, 318, 456, 1731
Bst1107I	GTATAC	3 cut(s)	1104, 1323, 1533
Bst2UI	CCWGG	2 cut(s)	662, 1469
Bst4CI	ACNGT	3 cut(s)	695, 1445, 2047
Bst6I	CTCTTC	4 cut(s)	138, 229, 1242, 2202
BstAPI	GCANNNNNTGC	1 cut(s)	711
BstAUI	TGTACA	1 cut(s)	1421
BstBAI	YACGTR	2 cut(s)	1320, 1530
BstBI	TTCGAA	3 cut(s)	94, 136, 1362
BstC8I	GCNNGC	8 cut(s)	438, 442, 712, 1050, 1515, 1664, 1897, 2157
BstDEI	CTNAG	8 cut(s)	99, 143, 212, 467, 1149, 1548, 2011, 2214
BstDSI	CCRYGG	3 cut(s)	151, 318, 456
BstEII	GGTNACC	1 cut(s)	301
BstF5I	GGATG	6 cut(s)	248, 787, 867, 1390, 1777, 1815
BstFNI	CGCG	1 cut(s)	608
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	5 cut(s)	1230, 1819, 2040, 2131, 2143
BstMAI	GTCTC	2 cut(s)	1451, 1730
BstMBI	GATC	5 cut(s)	1227, 1816, 2037, 2128, 2140
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 446, 711
BstNI	CCWGG	2 cut(s)	662, 1469
BstNSI	RCATGY	1 cut(s)	2175
BstPI	GGTNACC	1 cut(s)	301
BstSCI	CCNGG	5 cut(s)	28, 449, 660, 1467, 1830
BstSFI	CTRYAG	1 cut(s)	1660
BstSNI	TACGTA	1 cut(s)	1320
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	3 cut(s)	619, 1639, 2108
BstX2I	RGATCY	1 cut(s)	2037
BstXI	CCANNNNNNTGG	1 cut(s)	2002
BstYI	RGATCY	1 cut(s)	2037
BstZ17I	GTATAC	3 cut(s)	1104, 1323, 1533
BsuRI	GGCC	2 cut(s)	33, 449
BtgI	CCRYGG	3 cut(s)	151, 318, 456
BtgZI	GCGATG	1 cut(s)	1238
BtsCI	GGATG	6 cut(s)	248, 787, 867, 1390, 1777, 1815
BtsI	GCAGTG	1 cut(s)	1995
BtsIMutI	CAGTG	3 cut(s)	593, 1237, 1995
Cac8I	GCNNGC	8 cut(s)	438, 442, 712, 1050, 1515, 1664, 1897, 2157
CfoI	GCGC	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	3 cut(s)	32, 453, 570
CseI	GACGC	1 cut(s)	936
Csp6I	GTAC	5 cut(s)	81, 678, 1181, 1422, 2032
CviAII	CATG	8 cut(s)	152, 319, 457, 575, 1019, 1820, 1915, 2172
CviQI	GTAC	5 cut(s)	81, 678, 1181, 1422, 2032
DdeI	CTNAG	8 cut(s)	99, 143, 212, 467, 1149, 1548, 2011, 2214
DpnI	GATC	5 cut(s)	1229, 1818, 2039, 2130, 2142
DpnII	GATC	5 cut(s)	1227, 1816, 2037, 2128, 2140
DraI	TTTAAA	1 cut(s)	625
Eam1104I	CTCTTC	4 cut(s)	138, 229, 1242, 2202
EarI	CTCTTC	4 cut(s)	138, 229, 1242, 2202
EciI	GGCGGA	1 cut(s)	247
Eco105I	TACGTA	1 cut(s)	1320
Eco130I	CCWWGG	4 cut(s)	151, 318, 456, 1731
Eco24I	GRGCYC	2 cut(s)	1582, 1869
Eco47I	GGWCC	2 cut(s)	453, 570
Eco57I	CTGAAG	1 cut(s)	1193
Eco91I	GGTNACC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	570
EcoO65I	GGTNACC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	660, 1467
EcoT14I	CCWWGG	4 cut(s)	151, 318, 456, 1731
EcoT22I	ATGCAT	1 cut(s)	1632
EcoT38I	GRGCYC	2 cut(s)	1582, 1869
ErhI	CCWWGG	4 cut(s)	151, 318, 456, 1731
FaeI	CATG	8 cut(s)	155, 322, 460, 578, 1022, 1823, 1918, 2175
FatI	CATG	8 cut(s)	151, 318, 456, 574, 1018, 1819, 1914, 2171
FauI	CCCGC	1 cut(s)	1603
FbaI	TGATCA	2 cut(s)	1227, 1816
FblI	GTMKAC	4 cut(s)	324, 1103, 1322, 1532
Fnu4HI	GCNGC	4 cut(s)	518, 633, 1653, 2097
FokI	GGATG	6 cut(s)	235, 794, 874, 1397, 1784, 1822
FriOI	GRGCYC	2 cut(s)	1582, 1869
Fsp4HI	GCNGC	4 cut(s)	518, 633, 1653, 2097
FspBI	CTAG	4 cut(s)	437, 894, 1950, 2239
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	4 cut(s)	518, 633, 1653, 2097
GsaI	CCCAGC	1 cut(s)	1356
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	33, 449
HapII	CCGG	5 cut(s)	30, 441, 450, 779, 1832
HgaI	GACGC	1 cut(s)	936
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	8 cut(s)	155, 322, 460, 578, 1022, 1823, 1918, 2175
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	3 cut(s)	402, 1000, 1956
HindII	GTYRAC	3 cut(s)	402, 1000, 1956
HindIII	AAGCTT	3 cut(s)	1473, 1584, 2066
HpaI	GTTAAC	1 cut(s)	1000
HpaII	CCGG	5 cut(s)	30, 441, 450, 779, 1832
HphI	GGTGA	5 cut(s)	295, 354, 607, 994, 1087
Hpy166II	GTNNAC	9 cut(s)	325, 402, 1000, 1104, 1146, 1323, 1533, 1956, 2163
Hpy188III	TCNNGA	4 cut(s)	380, 779, 937, 2062
Hpy8I	GTNNAC	9 cut(s)	325, 402, 1000, 1104, 1146, 1323, 1533, 1956, 2163
Hpy99I	CGWCG	2 cut(s)	245, 428
HpyAV	CCTTC	4 cut(s)	922, 1282, 1394, 1486
HpyCH4III	ACNGT	3 cut(s)	695, 1445, 2047
HpyCH4IV	ACGT	4 cut(s)	744, 1007, 1319, 1529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 446, 711
HpyF3I	CTNAG	8 cut(s)	99, 143, 212, 467, 1149, 1548, 2011, 2214
HpySE526I	ACGT	4 cut(s)	744, 1007, 1319, 1529
Hsp92II	CATG	8 cut(s)	155, 322, 460, 578, 1022, 1823, 1918, 2175
HspAI	GCGC	1 cut(s)	464
Kpn2I	TCCGGA	1 cut(s)	778
KroI	GCCGGC	1 cut(s)	440
KroNI	GCCGGC	1 cut(s)	442
Ksp22I	TGATCA	2 cut(s)	1227, 1816
KspAI	GTTAAC	1 cut(s)	1000
Kzo9I	GATC	5 cut(s)	1227, 1816, 2037, 2128, 2140
LguI	GCTCTTC	1 cut(s)	2202
LmnI	GCTCC	2 cut(s)	1414, 1577
Lsp1109I	GCAGC	3 cut(s)	619, 1639, 2108
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	4 cut(s)	437, 894, 1950, 2239
MaeII	ACGT	4 cut(s)	744, 1007, 1319, 1529
MaeIII	GTNAC	6 cut(s)	301, 1525, 1945, 2146, 2174, 2183
MalI	GATC	5 cut(s)	1229, 1818, 2039, 2130, 2142
MboI	GATC	5 cut(s)	1227, 1816, 2037, 2128, 2140
MboII	GAAGA	9 cut(s)	125, 216, 351, 466, 1259, 1409, 1792, 2092, 2189
MfeI	CAATTG	1 cut(s)	1376
MflI	RGATCY	1 cut(s)	2037
MhlI	GDGCHC	3 cut(s)	1582, 1855, 1869
MlyI	GAGTC	4 cut(s)	150, 1267, 1473, 1533
MmeI	TCCRAC	5 cut(s)	49, 264, 1044, 1067, 1751
Mph1103I	ATGCAT	1 cut(s)	1632
MroI	TCCGGA	1 cut(s)	778
MroNI	GCCGGC	1 cut(s)	440
MroXI	GAANNNNTTC	3 cut(s)	746, 932, 1302
MseI	TTAA	8 cut(s)	11, 624, 999, 1044, 1488, 1572, 1961, 2049
MslI	CAYNNNNRTG	1 cut(s)	2000
MspI	CCGG	5 cut(s)	30, 441, 450, 779, 1832
MspR9I	CCNGG	5 cut(s)	30, 451, 662, 1469, 1832
MunI	CAATTG	1 cut(s)	1376
Mva1269I	GAATGC	1 cut(s)	1630
MvaI	CCWGG	2 cut(s)	662, 1469
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	3 cut(s)	437, 446, 711
NaeI	GCCGGC	1 cut(s)	442
NciI	CCSGG	3 cut(s)	30, 451, 1832
NcoI	CCATGG	3 cut(s)	151, 318, 456
NdeII	GATC	5 cut(s)	1227, 1816, 2037, 2128, 2140
NgoMIV	GCCGGC	1 cut(s)	440
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	8 cut(s)	155, 322, 460, 578, 1022, 1823, 1918, 2175
NlaIV	GGNNCC	5 cut(s)	454, 572, 1579, 1620, 2039
NmeAIII	GCCGAG	2 cut(s)	64, 1291
NmuCI	GTSAC	3 cut(s)	301, 1525, 2146
NsiI	ATGCAT	1 cut(s)	1632
NspI	RCATGY	1 cut(s)	2175
NspV	TTCGAA	3 cut(s)	94, 136, 1362
PciSI	GCTCTTC	1 cut(s)	2202
PcsI	WCGNNNNNNNCGW	2 cut(s)	91, 420
PctI	GAATGC	1 cut(s)	1630
PdiI	GCCGGC	1 cut(s)	442
PdmI	GAANNNNTTC	3 cut(s)	746, 932, 1302
PfeI	GAWTC	7 cut(s)	236, 275, 287, 395, 1015, 1723, 2220
PflMI	CCANNNNNTGG	1 cut(s)	580
PfoI	TCCNGGA	1 cut(s)	1467
PkrI	GCNGC	4 cut(s)	519, 634, 1654, 2098
PleI	GAGTC	4 cut(s)	150, 1266, 1472, 1532
PpsI	GAGTC	4 cut(s)	150, 1266, 1472, 1532
Ppu21I	YACGTR	2 cut(s)	1320, 1530
PpuMI	RGGWCCY	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	1479
Psp5II	RGGWCCY	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	660, 1467
PspEI	GGTNACC	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	1352
PspGI	CCWGG	2 cut(s)	660, 1467
PspN4I	GGNNCC	5 cut(s)	454, 572, 1579, 1620, 2039
PspPI	GGNCC	3 cut(s)	32, 453, 570
PspPPI	RGGWCCY	1 cut(s)	570
PstI	CTGCAG	1 cut(s)	1664
PsuI	RGATCY	1 cut(s)	2037
RsaI	GTAC	5 cut(s)	82, 679, 1182, 1423, 2033
RsaNI	GTAC	5 cut(s)	81, 678, 1181, 1422, 2032
RseI	CAYNNNNRTG	1 cut(s)	2000
SapI	GCTCTTC	1 cut(s)	2202
SaqAI	TTAA	8 cut(s)	11, 624, 999, 1044, 1488, 1572, 1961, 2049
SatI	GCNGC	4 cut(s)	518, 633, 1653, 2097
Sau3AI	GATC	5 cut(s)	1227, 1816, 2037, 2128, 2140
Sau96I	GGNCC	3 cut(s)	32, 453, 570
ScaI	AGTACT	2 cut(s)	679, 2033
SchI	GAGTC	4 cut(s)	150, 1267, 1473, 1533
ScrFI	CCNGG	5 cut(s)	30, 451, 662, 1469, 1832
SduI	GDGCHC	3 cut(s)	1582, 1855, 1869
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	1660
SfuI	TTCGAA	3 cut(s)	94, 136, 1362
SinI	GGWCC	2 cut(s)	453, 570
SmiMI	CAYNNNNRTG	1 cut(s)	2000
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
SnaBI	TACGTA	1 cut(s)	1320
SsiI	CCGC	6 cut(s)	258, 517, 608, 830, 1610, 2041
SspMI	CTAG	4 cut(s)	437, 894, 1950, 2239
StyD4I	CCNGG	5 cut(s)	28, 449, 660, 1467, 1830
StyI	CCWWGG	4 cut(s)	151, 318, 456, 1731
TaaI	ACNGT	3 cut(s)	695, 1445, 2047
TaiI	ACGT	4 cut(s)	747, 1010, 1322, 1532
TatI	WGTACW	4 cut(s)	80, 677, 1421, 2031
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	7 cut(s)	236, 275, 287, 395, 1015, 1723, 2220
Tru1I	TTAA	8 cut(s)	11, 624, 999, 1044, 1488, 1572, 1961, 2049
Tru9I	TTAA	8 cut(s)	11, 624, 999, 1044, 1488, 1572, 1961, 2049
TscAI	CASTG	3 cut(s)	593, 1237, 2002
TseFI	GTSAC	3 cut(s)	301, 1525, 2146
TseI	GCWGC	3 cut(s)	632, 1652, 2096
Tsp45I	GTSAC	3 cut(s)	301, 1525, 2146
TspDTI	ATGAA	6 cut(s)	768, 1007, 1301, 1531, 1623, 1691
TspGWI	ACGGA	2 cut(s)	412, 1198
TspRI	CASTG	3 cut(s)	593, 1237, 2002
Van91I	CCANNNNNTGG	1 cut(s)	580
VpaK11BI	GGWCC	2 cut(s)	453, 570
XapI	RAATTY	5 cut(s)	90, 138, 500, 991, 1357
XceI	RCATGY	1 cut(s)	2175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmiI	GTMKAC	4 cut(s)	324, 1103, 1322, 1532
XmnI	GAANNNNTTC	3 cut(s)	746, 932, 1302
XspI	CTAG	4 cut(s)	437, 894, 1950, 2239
ZrmI	AGTACT	2 cut(s)	679, 2033
Zsp2I	ATGCAT	1 cut(s)	1632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.