Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021557.1

Orthogroup ID

OG0007335

Physical Location & Seq

Genomic Coordinates Forward (+)

20561 .. 22165

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021557.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggctgataggcgtctattgcccctctattggagggcaatagaggttttcagaaaaatccagtgtggccagaatctggccaccggtgaccggaatccggcgaccggtgacaggaatccggcgaccgatgacgggctccggcgaagtctcctatggctaaaacgatggcggctggtggttctgcaaaacggagccggtgatgacgtccttgacgaagtcgctagtagtgacctctctccgggagcgatgtcgagaatcgcctccagaatcctatcttccttcactgacttcgatgaaccatactcctccgccgccgccaccaccaccacctccgattcccaatcagaatcacactctctggtcaccacaatctgttcaatggtatacaaattctacttcccacaaacccatttcaaatcgtcacctccaaagctcaatcttgatctaaaccccgattctttgacccacgaacacaccatttccatcttggtttggctggctgacgaggccgggtccttggtggccctaagctttttctactgggcaactgggtttgcaaaatttcgatactttatgtggctttatatcttctgcgccatgtcgattttaggcaatggtaatgtggagaggacccatgaagtggttcagtgtatgatgaggagtttcgctgagattggaatcagagatgcagtcgaggtcgatggcgacgacaaaccacaactgtccgagctcacaatttccagtggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

249

Amino Acids

27.87

Weight (kDa)

5.23

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19890
fragaria_vesca	FvH4_3g12270 FvH4_3g12270 FvH4_3g12270
malus_domestica	MD05G1251800.v1.1
prunus_persica	Prupe.4G111800_v2.0.a1
pyrus_communis	pycom05g22980 pycom10g19560
rosa_chinensis	RchiOBHm_Chr5g0020081 RchiOBHm_Chr7g0211421
rosa_laevigata	RLG00000032497
rosa_multiflora	Rmu_sc0021557.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058120
rosa_rugosa	Rorug05G0056700
rosa_samantha	Rh5AG146800 Rh5BG146300 Rh5CG157900 Rh5DG145800 Rh6CG070300 Rh6DG067500 Rh7AG292200 Rh7CG312200 Rh7DG257000 Rh7DG263700
rosa_wichuraiana	Rw5G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	207
AccB7I	CCANNNNNTGG	2 cut(s)	76, 640
AccI	GTMKAC	1 cut(s)	384
AciI	CCGC	4 cut(s)	169, 309, 312, 315
AcoI	YGGCCR	2 cut(s)	67, 78
AcsI	RAATTY	2 cut(s)	389, 560
AcyI	GRCGYC	2 cut(s)	13, 204
AfiI	CCNNNNNNNGG	9 cut(s)	30, 76, 90, 97, 104, 111, 132, 238, 640
AgeI	ACCGGT	2 cut(s)	83, 104
AgsI	TTSAA	2 cut(s)	378, 415
AluBI	AGCT	3 cut(s)	433, 531, 730
AluI	AGCT	3 cut(s)	433, 531, 730
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	76
AoxI	GGCC	4 cut(s)	67, 78, 507, 522
ApoI	RAATTY	2 cut(s)	389, 560
AsiGI	ACCGGT	2 cut(s)	83, 104
Asp700I	GAANNNNTTC	1 cut(s)	642
AspLEI	GCGC	1 cut(s)	596
AspS9I	GGNCC	3 cut(s)	513, 523, 630
AsuC2I	CCSGG	2 cut(s)	240, 511
AsuHPI	GGTGA	5 cut(s)	98, 119, 209, 355, 414
AvaII	GGWCC	2 cut(s)	513, 630
BalI	TGGCCA	2 cut(s)	69, 80
BanII	GRGCYC	2 cut(s)	138, 732
Bbv12I	GWGCWC	1 cut(s)	732
BccI	CCATC	3 cut(s)	159, 491, 695
BcnI	CCSGG	2 cut(s)	240, 511
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	3 cut(s)	170, 312, 315
BlsI	GCNGC	3 cut(s)	171, 313, 316
Bme1390I	CCNGG	2 cut(s)	240, 511
Bme18I	GGWCC	2 cut(s)	513, 630
BmgT120I	GGNCC	3 cut(s)	513, 523, 630
BmiI	GGNNCC	4 cut(s)	137, 193, 514, 632
BmrFI	CCNGG	2 cut(s)	240, 511
BmrI	ACTGGG	2 cut(s)	550, 558
BmsI	GCATC	1 cut(s)	676
BmuI	ACTGGG	2 cut(s)	550, 558
BpmI	CTGGAG	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	527
BpuMI	CCSGG	2 cut(s)	240, 511
BsaBI	GATNNNNATC	1 cut(s)	677
BsaHI	GRCGYC	2 cut(s)	13, 204
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	3 cut(s)	83, 90, 104
Bsc4I	CCNNNNNNNGG	9 cut(s)	30, 76, 90, 97, 104, 111, 132, 238, 640
Bse118I	RCCGGY	3 cut(s)	83, 104, 194
Bse1I	ACTGG	4 cut(s)	61, 545, 553, 741
Bse3DI	GCAATG	1 cut(s)	619
Bse8I	GATNNNNATC	1 cut(s)	677
BseDI	CCNNGG	1 cut(s)	516
BseJI	GATNNNNATC	1 cut(s)	677
BseLI	CCNNNNNNNGG	9 cut(s)	30, 76, 90, 97, 104, 111, 132, 238, 640
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	4 cut(s)	61, 545, 553, 741
BseRI	GAGGAG	2 cut(s)	295, 673
Bsh1285I	CGRYCG	2 cut(s)	105, 126
BshFI	GGCC	4 cut(s)	69, 80, 509, 524
BshTI	ACCGGT	2 cut(s)	83, 104
BsiEI	CGRYCG	2 cut(s)	105, 126
BsiHKAI	GWGCWC	1 cut(s)	732
BsiSI	CCGG	9 cut(s)	84, 91, 98, 105, 119, 139, 195, 239, 510
BslI	CCNNNNNNNGG	9 cut(s)	30, 76, 90, 97, 104, 111, 132, 238, 640
BsmAI	GTCTC	1 cut(s)	152
BsnI	GGCC	4 cut(s)	69, 80, 509, 524
Bsp1286I	GDGCHC	2 cut(s)	138, 732
Bsp143I	GATC	1 cut(s)	442
BspACI	CCGC	4 cut(s)	169, 309, 312, 315
BspANI	GGCC	4 cut(s)	69, 80, 509, 524
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	4 cut(s)	137, 193, 514, 632
BsrDI	GCAATG	1 cut(s)	619
BsrFI	RCCGGY	3 cut(s)	83, 104, 194
BsrI	ACTGG	4 cut(s)	61, 545, 553, 741
BssAI	RCCGGY	3 cut(s)	83, 104, 194
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	1 cut(s)	442
BssNAI	GTATAC	1 cut(s)	385
BssNI	GRCGYC	2 cut(s)	13, 204
BssT1I	CCWWGG	1 cut(s)	516
Bst1107I	GTATAC	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	723
BstACI	GRCGYC	2 cut(s)	13, 204
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	2 cut(s)	527, 669
BstEII	GGTNACC	2 cut(s)	86, 361
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	442
BstMCI	CGRYCG	2 cut(s)	105, 126
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 506
BstPI	GGTNACC	2 cut(s)	86, 361
BstSCI	CCNGG	2 cut(s)	238, 509
BstZ17I	GTATAC	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	69, 80, 509, 524
BtgZI	GCGATG	1 cut(s)	260
BtsIMutI	CAGTG	4 cut(s)	68, 282, 653, 748
Cac8I	GCNNGC	1 cut(s)	498
CaiI	CAGNNNCTG	1 cut(s)	76
CfoI	GCGC	1 cut(s)	596
Cfr10I	RCCGGY	3 cut(s)	83, 104, 194
Cfr13I	GGNCC	3 cut(s)	513, 523, 630
CseI	GACGC	1 cut(s)	2
CspAI	ACCGGT	2 cut(s)	83, 104
CviAII	CATG	2 cut(s)	598, 635
DdeI	CTNAG	2 cut(s)	527, 669
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
EaeI	YGGCCR	2 cut(s)	67, 78
EciI	GGCGGA	1 cut(s)	298
Ecl136II	GAGCTC	1 cut(s)	730
Eco130I	CCWWGG	1 cut(s)	516
Eco24I	GRGCYC	2 cut(s)	138, 732
Eco47I	GGWCC	2 cut(s)	513, 630
Eco53kI	GAGCTC	1 cut(s)	730
Eco91I	GGTNACC	2 cut(s)	86, 361
EcoICRI	GAGCTC	1 cut(s)	730
EcoO109I	RGGNCCY	2 cut(s)	513, 630
EcoO65I	GGTNACC	2 cut(s)	86, 361
EcoT14I	CCWWGG	1 cut(s)	516
EcoT38I	GRGCYC	2 cut(s)	138, 732
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	2 cut(s)	601, 638
FaiI	YATR	8 cut(s)	154, 301, 385, 575, 585, 599, 636, 653
FatI	CATG	2 cut(s)	597, 634
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	170, 312, 315
FriOI	GRGCYC	2 cut(s)	138, 732
Fsp4HI	GCNGC	3 cut(s)	170, 312, 315
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	3 cut(s)	170, 312, 315
GsuI	CTGGAG	1 cut(s)	247
HaeIII	GGCC	4 cut(s)	69, 80, 509, 524
HapII	CCGG	9 cut(s)	84, 91, 98, 105, 119, 139, 195, 239, 510
HgaI	GACGC	1 cut(s)	2
HhaI	GCGC	1 cut(s)	596
Hin1I	GRCGYC	2 cut(s)	13, 204
Hin1II	CATG	2 cut(s)	601, 638
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	9 cut(s)	73, 94, 115, 255, 267, 335, 347, 455, 678
HpaII	CCGG	9 cut(s)	84, 91, 98, 105, 119, 139, 195, 239, 510
HphI	GGTGA	5 cut(s)	98, 119, 209, 355, 414
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	5 cut(s)	53, 334, 346, 683, 727
Hpy188III	TCNNGA	3 cut(s)	252, 264, 440
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	723
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	184, 557, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 506
HpyF3I	CTNAG	2 cut(s)	527, 669
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	2 cut(s)	13, 204
Hsp92II	CATG	2 cut(s)	601, 638
HspAI	GCGC	1 cut(s)	594
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	3 cut(s)	141, 191, 242
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	5 cut(s)	86, 107, 227, 361, 420
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	2 cut(s)	267, 580
MhlI	GDGCHC	2 cut(s)	138, 732
MlsI	TGGCCA	2 cut(s)	69, 80
MluCI	AATT	3 cut(s)	389, 560, 735
MluNI	TGGCCA	2 cut(s)	69, 80
Mox20I	TGGCCA	2 cut(s)	69, 80
MroXI	GAANNNNTTC	1 cut(s)	642
MscI	TGGCCA	2 cut(s)	69, 80
Msp20I	TGGCCA	2 cut(s)	69, 80
MspI	CCGG	9 cut(s)	84, 91, 98, 105, 119, 139, 195, 239, 510
MspR9I	CCNGG	2 cut(s)	240, 511
MwoI	GCNNNNNNNGC	2 cut(s)	19, 506
NciI	CCSGG	2 cut(s)	240, 511
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	2 cut(s)	601, 638
NlaIV	GGNNCC	4 cut(s)	137, 193, 514, 632
NmuCI	GTSAC	5 cut(s)	86, 107, 227, 361, 420
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 705
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	9 cut(s)	73, 94, 115, 255, 267, 335, 347, 455, 678
PflFI	GACNNNGTC	1 cut(s)	215
PflMI	CCANNNNNTGG	2 cut(s)	76, 640
PfoI	TCCNGGA	1 cut(s)	238
PinAI	ACCGGT	2 cut(s)	83, 104
PkrI	GCNGC	3 cut(s)	171, 313, 316
PpuMI	RGGWCCY	2 cut(s)	513, 630
Psp124BI	GAGCTC	1 cut(s)	732
Psp5II	RGGWCCY	2 cut(s)	513, 630
PspEI	GGTNACC	2 cut(s)	86, 361
PspN4I	GGNNCC	4 cut(s)	137, 193, 514, 632
PspPI	GGNCC	3 cut(s)	513, 523, 630
PspPPI	RGGWCCY	2 cut(s)	513, 630
PstNI	CAGNNNCTG	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	732
SatI	GCNGC	3 cut(s)	170, 312, 315
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	3 cut(s)	513, 523, 630
ScrFI	CCNGG	2 cut(s)	240, 511
SduI	GDGCHC	2 cut(s)	138, 732
SetI	ASST	9 cut(s)	48, 207, 234, 332, 427, 435, 533, 699, 732
SfaNI	GCATC	1 cut(s)	676
SgrAI	CRCCGGYG	1 cut(s)	83
SinI	GGWCC	2 cut(s)	513, 630
Sse9I	AATT	3 cut(s)	389, 560, 735
SsiI	CCGC	4 cut(s)	169, 309, 312, 315
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	732
StyD4I	CCNGG	2 cut(s)	238, 509
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	1 cut(s)	723
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	6 cut(s)	251, 291, 565, 602, 693, 699
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	3 cut(s)	389, 560, 735
TauI	GCSGC	3 cut(s)	172, 314, 317
TfiI	GAWTC	9 cut(s)	73, 94, 115, 255, 267, 335, 347, 455, 678
TscAI	CASTG	4 cut(s)	68, 289, 653, 748
TseFI	GTSAC	5 cut(s)	86, 107, 227, 361, 420
Tsp45I	GTSAC	5 cut(s)	86, 107, 227, 361, 420
TspDTI	ATGAA	2 cut(s)	309, 651
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	4 cut(s)	68, 289, 653, 748
Tth111I	GACNNNGTC	1 cut(s)	215
Van91I	CCANNNNNTGG	2 cut(s)	76, 640
VpaK11BI	GGWCC	2 cut(s)	513, 630
XapI	RAATTY	2 cut(s)	389, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	1 cut(s)	222
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.