Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007335

Physical Location & Seq

Genomic Coordinates Forward (+)

28045326 .. 28068216

Gene Structure 22891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG263700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTATACAAATTCTACTTCCCACAAACCCATTTCAAATCGTCACCTCCAAAGCTCAATCTTGATCTAAACCCCGATTCTTTGACCCATGAACACGCCATTTTCGTCTTGGCTTGGCTGGCCGACGAGGCCGAGTCCATGGTGGCCCTAAGCTTTTTCTATTGGGCAACTGGCGGCGACGATGCGCTCACCATTCACGAAGACGACGACGACGGATCTAGCTTGAATCTCCGAAGCAGTAGCACTGCAAAAAAATCTCCAGTAGCACTCAAATTGATTCCGGAATCGACCTTCGCCTCTTATTCTAATCTGAATCGCGCCGGCGACGACGATGCGCTCACCATTCACGAAGACAACGGCGACGATCTGATGGGCTTCGTGACCGTGAATTCCGTAGAATCGATTGAAATCTCCAAACCTGAGCAAATCAAAAGTAGCAGTAGAATCGAAACCTCCAAAGTTCGATTTACCCAGCTTGAAACCTCAACATTTACCATAACCGACTCGAATTGTGGTGAAGTCACCAATTCTAGTCCAGATCGCAGCAAGTCGGAGACTGAGAATCGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

190

Amino Acids

21.02

Weight (kDa)

4.56

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19890
fragaria_vesca	FvH4_3g12270 FvH4_3g12270 FvH4_3g12270
malus_domestica	MD05G1251800.v1.1
prunus_persica	Prupe.4G111800_v2.0.a1
pyrus_communis	pycom05g22980 pycom10g19560
rosa_chinensis	RchiOBHm_Chr5g0020081 RchiOBHm_Chr7g0211421
rosa_laevigata	RLG00000032497
rosa_multiflora	Rmu_sc0021557.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058120
rosa_rugosa	Rorug05G0056700
rosa_samantha	Rh5AG146800 Rh5BG146300 Rh5CG157900 Rh5DG145800 Rh6CG070300 Rh6DG067500 Rh7AG292200 Rh7CG312200 Rh7DG257000 Rh7DG263700
rosa_wichuraiana	Rw5G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	1 cut(s)	318
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	11, 388
AgsI	TTSAA	4 cut(s)	37, 226, 407, 479
AluBI	AGCT	4 cut(s)	55, 153, 222, 475
AluI	AGCT	4 cut(s)	55, 153, 222, 475
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	1 cut(s)	223
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	3 cut(s)	120, 129, 144
ApeKI	GCWGC	1 cut(s)	543
ApoI	RAATTY	2 cut(s)	11, 388
AspLEI	GCGC	3 cut(s)	187, 320, 337
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	5 cut(s)	36, 181, 331, 514, 527
BbsI	GAAGAC	2 cut(s)	207, 357
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	373
BcgI	CGANNNNNNTGC	4 cut(s)	314, 348, 427, 461
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	2 cut(s)	219, 531
BglI	GCCNNNNNGGC	1 cut(s)	128
BisI	GCNGC	2 cut(s)	175, 544
BlsI	GCNGC	2 cut(s)	176, 545
BmgT120I	GGNCC	1 cut(s)	145
BmsI	GCATC	2 cut(s)	172, 322
BpiI	GAAGAC	2 cut(s)	207, 357
BpmI	CTGGAG	1 cut(s)	243
Bpu10I	CCTNAGC	2 cut(s)	149, 420
Bsa29I	ATCGAT	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	2 cut(s)	175, 260
Bse8I	GATNNNNATC	1 cut(s)	407
BseAI	TCCGGA	1 cut(s)	280
BseCI	ATCGAT	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	407
BseMII	CTCAG	2 cut(s)	411, 549
BseNI	ACTGG	2 cut(s)	175, 260
BseXI	GCAGC	1 cut(s)	555
BseYI	CCCAGC	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	318
BshFI	GGCC	3 cut(s)	122, 131, 146
BshVI	ATCGAT	1 cut(s)	401
BsiSI	CCGG	2 cut(s)	281, 321
BsmAI	GTCTC	1 cut(s)	548
BsnI	GGCC	3 cut(s)	122, 131, 146
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	64, 215, 364, 538
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	3 cut(s)	122, 131, 146
BspCNI	CTCAG	2 cut(s)	412, 550
BspDI	ATCGAT	1 cut(s)	401
BspEI	TCCGGA	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	318
BspPI	GGATC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	175, 260
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	4 cut(s)	64, 215, 364, 538
BssNAI	GTATAC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	138
Bst1107I	GTATAC	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	385
BstC8I	GCNNGC	2 cut(s)	120, 322
BstDEI	CTNAG	3 cut(s)	149, 420, 558
BstDSI	CCRYGG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	318
BstHHI	GCGC	3 cut(s)	187, 320, 337
BstKTI	GATC	4 cut(s)	67, 218, 367, 541
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	4 cut(s)	64, 215, 364, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 128
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	555
BstV2I	GAAGAC	2 cut(s)	207, 357
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BstZ17I	GTATAC	1 cut(s)	7
Bsu15I	ATCGAT	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	122, 131, 146
BsuTUI	ATCGAT	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	120, 322
CfoI	GCGC	3 cut(s)	187, 320, 337
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	401
CviAII	CATG	2 cut(s)	89, 139
DdeI	CTNAG	3 cut(s)	149, 420, 558
DpnI	GATC	4 cut(s)	66, 217, 366, 540
DpnII	GATC	4 cut(s)	64, 215, 364, 538
EaeI	YGGCCR	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	92, 142
FaiI	YATR	4 cut(s)	7, 90, 140, 497
FatI	CATG	2 cut(s)	88, 138
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	175, 544
Fsp4HI	GCNGC	2 cut(s)	175, 544
FspBI	CTAG	2 cut(s)	219, 531
GlaI	GCGC	3 cut(s)	186, 319, 336
GluI	GCNGC	2 cut(s)	175, 544
GsaI	CCCAGC	1 cut(s)	475
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	122, 131, 146
HapII	CCGG	2 cut(s)	281, 321
HhaI	GCGC	3 cut(s)	187, 320, 337
Hin1II	CATG	2 cut(s)	92, 142
Hin6I	GCGC	3 cut(s)	185, 318, 335
HinP1I	GCGC	3 cut(s)	185, 318, 335
HindIII	AAGCTT	1 cut(s)	151
HpaII	CCGG	2 cut(s)	281, 321
HphI	GGTGA	5 cut(s)	36, 181, 331, 514, 527
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	5 cut(s)	233, 312, 369, 553, 572
Hpy188III	TCNNGA	6 cut(s)	62, 197, 281, 347, 379, 536
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	8 cut(s)	128, 182, 209, 212, 215, 329, 332, 365
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 128
HpyF3I	CTNAG	3 cut(s)	149, 420, 558
Hsp92II	CATG	2 cut(s)	92, 142
HspAI	GCGC	3 cut(s)	185, 318, 335
Kpn2I	TCCGGA	1 cut(s)	280
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	64, 215, 364, 538
LpnPI	CCDG	8 cut(s)	104, 156, 273, 294, 334, 432, 485, 549
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	2 cut(s)	172, 322
MaeI	CTAG	2 cut(s)	219, 531
MaeIII	GTNAC	3 cut(s)	42, 379, 520
MalI	GATC	4 cut(s)	66, 217, 366, 540
MboI	GATC	4 cut(s)	64, 215, 364, 538
MboII	GAAGA	2 cut(s)	212, 362
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	5 cut(s)	11, 272, 388, 508, 526
MlyI	GAGTC	2 cut(s)	143, 497
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	5 cut(s)	57, 121, 307, 463, 493
MreI	CGCCGGCG	1 cut(s)	320
MroI	TCCGGA	1 cut(s)	280
MroNI	GCCGGC	1 cut(s)	320
MspI	CCGG	2 cut(s)	281, 321
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	119, 128
NaeI	GCCGGC	1 cut(s)	322
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	4 cut(s)	64, 215, 364, 538
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	92, 142
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	3 cut(s)	42, 379, 520
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 204
PdiI	GCCGGC	1 cut(s)	322
PfeI	GAWTC	8 cut(s)	77, 226, 277, 284, 313, 398, 444, 562
PkrI	GCNGC	2 cut(s)	176, 545
PleI	GAGTC	2 cut(s)	142, 497
PpsI	GAGTC	2 cut(s)	142, 497
PspFI	CCCAGC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	215
SatI	GCNGC	2 cut(s)	175, 544
Sau3AI	GATC	4 cut(s)	64, 215, 364, 538
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	143, 497
SetI	ASST	9 cut(s)	49, 57, 155, 224, 293, 421, 455, 477, 485
SfaNI	GCATC	2 cut(s)	172, 322
SfiI	GGCCNNNNNGGCC	1 cut(s)	128
SgrAI	CRCCGGYG	1 cut(s)	320
Sse9I	AATT	5 cut(s)	11, 272, 388, 508, 526
SsiI	CCGC	1 cut(s)	174
SspMI	CTAG	2 cut(s)	219, 531
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	6 cut(s)	287, 401, 447, 463, 506, 565
TasI	AATT	5 cut(s)	11, 272, 388, 508, 526
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	8 cut(s)	77, 226, 277, 284, 313, 398, 444, 562
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	3 cut(s)	42, 379, 520
TseI	GCWGC	1 cut(s)	543
Tsp45I	GTSAC	3 cut(s)	42, 379, 520
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	2 cut(s)	228, 382
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	2 cut(s)	11, 388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	2 cut(s)	219, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.