RchiOBHm_Chr5g0020081

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007335
Physical Location & Seq
Reverse (-)
14398774 .. 14401055
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30019

Sequence Viewer

Length: 2139 bp
ATGGTTGCTTCTGTTCGAATTCTCAGAAACCATGGACTCCAACACAAGCTATTATCGCCTACATCCACCCACATTTCTCAACTCAAGAGAACCCTCTCGTCCTTCACTGACTCCGATGAACCATGCTCCTCCGCCGCCGCCGCCGCCGCCGCCGCCACCCCCACCACCTCCGATTCCCAATCAGAATCACACTCTCTGGTCACCACAATCTGTTCAATGGTATACAAATCCTACTCCCCACAAACCCATTTCAAATCTTCACCTCCAAACCTCAATCTTGATCTAAATCCCGATTCTTTGACCCACGAACACGCCATTTCCGTCGTGGCTTCACTTTCCGACGAGGCCGGGTCCATGGTGGCCCTCAGCTTCTTCTACTGGGCTATTGGGTTTGCGAAATTTCGATACTTTATGCGGCTTTACATCTTCTGCGCCATGTCGATTTTCGGCAATGGCAATTTGGAGAGGACCCATGAAGTGGTTCACTGTATGGTGAGGAGTTTCGCTGAGATTGGGAGGTTTAAAGAGGCTGCCGATATGGTTTTCGAGATGCAGAACCAGGGCCTTGTGTTGAGTACTCGGACTTTGAACTGTGTCATCGGCATTGCTTGCGAAATGGGTTTAATGGAATATGCAGAGAACGTGTTCGACGAAATGTCTGTGAGAGGAGTGTGTCCTGATGCTTTGAGCTTTAAGTGTATGGTTGTTGGGTATTGTCAAAACGGTGTGGTTTTGGAGGCGGATAGGTGGTTGAGTAAGATGATTGAGAGGGGCTTTGTTTTGGACAATGCTAGTTTTACTTTGATTATAAGTGTGTTTTGTGAGAAGGGTTTTGTGAGTAGAGCGTCTTGGTGTTTCGATAAGATGAGTAAGATGGGGGTGAAGCCGAATTTGGTTAACTTTACGTCTTTGATACATGGGTTGTGCAAGAGGGGGAGTGTTAAGCAGGCGTTTGAGATGTTGGAGGAGATGGTTAGGAGAGGTTGGAAGCCGAATGTGTATACACATACCGCGTTGATTGATGGGTTGTGCAAGAAAGGTTGGACTGAGAGGGCGTTTAGGCTGTTTCTGAAGCTTGTCCGGAGTGATAGTTATAAGCCAAATGTGCATACTTATACTGCGATGATCAGTGGATATTGCAAGGAGGATAAAATGAGCCGTGCGGAGATGTTGTTGAGCAGAATGAAGGAACAAGAATTAGTTCCTAACACCAATACGTATACTACTCTCGTTTATGGGCATTGCAAAGCTGGGAATTTTGAAAGAGCTTATGAATTGATGGATGTAATGAGTGAAGAAGGATTTGCTCCAAATATATGTACATTCAATGCAGTAATGGACAGTCTCTGTAAAAAGGGGAGGGTCCAAGAAGCTTATAAACTGATTAAGAAGGGCCTTCGCCGAGGATTGCAGGCTGATAGAGTCACGTATACCATTTTCATATCCGAGCACTGCAAACGGGGTGATATTAACGGTGCCCTAGCTTTTTTCAATAAGATGGTCAAGGCTGGATTGGAGCCTGATATACATTCATATACCACTTTGATTGCTGCCTTCTGCAGGCAAAAGAAAATGAAAGAAAGCGAGAAACTTTTCAAGGTAGCTGTAAGGCTTGGCTTGATTCCGGCCAAGGAGACCTATACATCCATGATATGTGGGTACTGTAGGGATGGAAATATTGCTTTGGCTGTAAAGTTCTTCCACAGGATGAGTGATCATGGTTGTTCCCCGGATAGTTTTACTTATGGTGCTCTAATAAGTGGGCTCTGCAAGGAGGAAAAACTTGACGAGGCTCGTAAGTTATATGATACCATGATGGACAAGGGGCTGTCACCCTGTGAAGTTACTAGGTTGACATTAGCTCACGAGTATTGCCAAAAAGATAACTATGCCACTGCTATGGTCATCTTAGATAGGCTAGACAAGAAGTTCTGGATCCGCACGGTTAACACATTGGTCAGGAAGCTTTGTTGTGAGAAGAAAGTGGGAATAGCAGCATTGTTCTTTCACAAATTAGTTGATAAGGATCAGAATGTGGATCGTGTGACATTGCAAGCATTTATGACTGCATGTTATGAGAGCAACAAGTATGCTCTTCTTTCGGATTTGACTGAGAGAATCTCTAAAGGAATTGGCTAG

Protein Analysis

712

Amino Acids

80.22

Weight (kDa)

8.74

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 193 - 240 5.4e-08 PPR repeat family
PPR_2 PF13041 231 - 274 8.5e-06 PPR repeat family
PPR_2 PF13041 263 - 310 3.2e-09 PPR repeat family
PPR_1 PF12854 292 - 325 2e-12 PPR repeat
PPR_2 PF13041 296 - 345 2.2e-18 PPR repeat family
PPR PF01535 301 - 328 7.5e-07 PPR repeat
PPR_3 PF13812 320 - 380 1.8e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 328 - 356 1.9e-09 PPR repeat
PPR_2 PF13041 337 - 376 7.1e-07 PPR repeat family
PPR_long PF17177 351 - 476 4.7e-09 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 358 - 461 2e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 365 - 396 2.2e-09 PPR repeat
PPR_2 PF13041 367 - 416 2.4e-15 PPR repeat family
PPR PF01535 371 - 398 1.9e-07 PPR repeat
PPR_3 PF13812 391 - 447 5e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 400 - 430 6.5e-10 PPR repeat
PPR_2 PF13041 402 - 451 9.6e-13 PPR repeat family
PPR PF01535 406 - 435 6.1e-06 PPR repeat
PPR_1 PF12854 434 - 463 2.1e-08 PPR repeat
PPR_2 PF13041 437 - 486 3.6e-13 PPR repeat family
PPR_1 PF12854 468 - 501 2.8e-08 PPR repeat
PPR_2 PF13041 473 - 521 1.2e-15 PPR repeat family
PPR_long PF17177 480 - 621 2.1e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 504 - 533 8.6e-07 PPR repeat
PPR_2 PF13041 507 - 556 1e-10 PPR repeat family
PPR_1 PF12854 541 - 571 5.8e-08 PPR repeat
PPR_2 PF13041 546 - 591 3e-16 PPR repeat family
PPR PF01535 546 - 575 1.7e-07 PPR repeat
PPR_1 PF12854 574 - 605 1e-11 PPR repeat
PPR PF01535 580 - 610 5.5e-07 PPR repeat
PPR_2 PF13041 582 - 625 2.2e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 809, 1095, 1377
AccB1I GGYRCC 1 cut(s) 1475
AccB7I CCANNNNNTGG 1 cut(s) 478
AccI GTMKAC 4 cut(s) 222, 1001, 1220, 1430
AccII CGCG 1 cut(s) 1013
AccIII TCCGGA 1 cut(s) 1080
AclWI GGATC 4 cut(s) 1930, 1943, 2034, 2046
AcoI YGGCCR 1 cut(s) 1626
AcsI RAATTY 4 cut(s) 18, 398, 889, 1255
AcuI CTGAAG 1 cut(s) 1091
AdeI CACNNNGTG 1 cut(s) 1838
AfaI GTAC 3 cut(s) 577, 1321, 1661
AfiI CCNNNNNNNGG 2 cut(s) 478, 1560
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 7 cut(s) 216, 253, 589, 1262, 1327, 1492, 1597
AhdI GACNNNNNGTC 1 cut(s) 655
AjnI CCWGG 1 cut(s) 558
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
Alw21I GWGCWC 2 cut(s) 1452, 1753
Alw26I GTCTC 2 cut(s) 1349, 1628
AlwI GGATC 4 cut(s) 1930, 1943, 2034, 2046
AlwNI CAGNNNCTG 1 cut(s) 1347
Aor13HI TCCGGA 1 cut(s) 1080
AoxI GGCC 5 cut(s) 345, 360, 562, 1393, 1626
ApeKI GCWGC 3 cut(s) 530, 1550, 1994
ApoI RAATTY 4 cut(s) 18, 398, 889, 1255
Asp700I GAANNNNTTC 4 cut(s) 480, 644, 1200, 1592
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 6 cut(s) 351, 361, 468, 562, 1363, 1393
AsuC2I CCSGG 2 cut(s) 349, 1730
AsuHPI GGTGA 6 cut(s) 193, 252, 505, 892, 1475, 1824
AsuII TTCGAA 1 cut(s) 16
AvaII GGWCC 3 cut(s) 351, 468, 1363
BaeGI GKGCMC 1 cut(s) 1480
BaeI ACNNNNGTAYC 2 cut(s) 905, 938
BamHI GGATCC 1 cut(s) 1935
BanI GGYRCC 1 cut(s) 1475
BanII GRGCYC 1 cut(s) 1767
BauI CACGAG 1 cut(s) 1865
Bbv12I GWGCWC 2 cut(s) 1452, 1753
BbvCI CCTCAGC 1 cut(s) 365
BbvI GCAGC 3 cut(s) 517, 1537, 2006
BccI CCATC 7 cut(s) 868, 964, 1016, 1273, 1492, 1664, 1810
BceAI ACGGC 1 cut(s) 1143
BciT130I CCWGG 1 cut(s) 560
BclI TGATCA 2 cut(s) 1125, 1714
BcnI CCSGG 2 cut(s) 349, 1730
BcoDI GTCTC 2 cut(s) 1349, 1628
BfaI CTAG 5 cut(s) 792, 1481, 1848, 1919, 2137
BfmI CTRYAG 2 cut(s) 1558, 1663
BmcAI AGTACT 1 cut(s) 577
Bme1390I CCNGG 3 cut(s) 349, 560, 1730
Bme18I GGWCC 3 cut(s) 351, 468, 1363
BmeRI GACNNNNNGTC 1 cut(s) 655
BmgT120I GGNCC 6 cut(s) 351, 361, 468, 562, 1363, 1393
BmiI GGNNCC 6 cut(s) 352, 470, 1364, 1477, 1518, 1937
BmrFI CCNGG 3 cut(s) 349, 560, 1730
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 2 cut(s) 540, 670
BmuI ACTGGG 1 cut(s) 388
BplI GAGNNNNNCTC 2 cut(s) 2105, 2137
Bpu10I CCTNAGC 1 cut(s) 365
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 2 cut(s) 349, 1730
BsaAI YACGTR 2 cut(s) 1218, 1428
BsaBI GATNNNNATC 2 cut(s) 285, 2025
BsaI GGTCTC 1 cut(s) 1628
BsaJI CCNNGG 6 cut(s) 31, 354, 559, 1402, 1629, 1728
BsaWI WCCGGW 1 cut(s) 1080
BsaXI ACNNNNNCTCC 4 cut(s) 1075, 1105, 1157, 1187
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 1560
Bse1I ACTGG 1 cut(s) 383
Bse3DI GCAATG 4 cut(s) 457, 603, 1240, 2048
Bse8I GATNNNNATC 2 cut(s) 285, 2025
BseAI TCCGGA 1 cut(s) 1080
BseBI CCWGG 1 cut(s) 560
BseDI CCNNGG 6 cut(s) 31, 354, 559, 1402, 1629, 1728
BseGI GGATG 5 cut(s) 62, 1288, 1643, 1675, 1713
BseJI GATNNNNATC 2 cut(s) 285, 2025
BseLI CCNNNNNNNGG 2 cut(s) 478, 1560
BseMI GCAATG 4 cut(s) 457, 603, 1240, 2048
BseMII CTCAG 5 cut(s) 37, 379, 498, 1038, 2103
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 4 cut(s) 118, 511, 681, 980
BseSI GKGCMC 1 cut(s) 1480
BseXI GCAGC 3 cut(s) 517, 1537, 2006
BseYI CCCAGC 1 cut(s) 1250
Bsh1236I CGCG 1 cut(s) 1013
BshFI GGCC 5 cut(s) 347, 362, 564, 1395, 1628
BshNI GGYRCC 1 cut(s) 1475
BsiHKAI GWGCWC 2 cut(s) 1452, 1753
BsiSI CCGG 4 cut(s) 348, 1081, 1625, 1730
BslI CCNNNNNNNGG 2 cut(s) 478, 1560
BsmAI GTCTC 2 cut(s) 1349, 1628
BsnI GGCC 5 cut(s) 347, 362, 564, 1395, 1628
Bso31I GGTCTC 1 cut(s) 1628
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 4 cut(s) 1452, 1480, 1753, 1767
Bsp13I TCCGGA 1 cut(s) 1080
Bsp1407I TGTACA 1 cut(s) 1319
Bsp143I GATC 6 cut(s) 280, 1125, 1714, 1935, 2026, 2038
Bsp19I CCATGG 2 cut(s) 31, 354
BspANI GGCC 5 cut(s) 347, 362, 564, 1395, 1628
BspCNI CTCAG 5 cut(s) 36, 378, 499, 1039, 2104
BspEI TCCGGA 1 cut(s) 1080
BspFNI CGCG 1 cut(s) 1013
BspLI GGNNCC 6 cut(s) 352, 470, 1364, 1477, 1518, 1937
BspMAI CTGCAG 1 cut(s) 1562
BspPI GGATC 4 cut(s) 1930, 1943, 2034, 2046
BspQI GCTCTTC 1 cut(s) 2100
BspT104I TTCGAA 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 1475
BspTNI GGTCTC 1 cut(s) 1628
BsrDI GCAATG 4 cut(s) 457, 603, 1240, 2048
BsrGI TGTACA 1 cut(s) 1319
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 6 cut(s) 31, 354, 559, 1402, 1629, 1728
BssMI GATC 6 cut(s) 280, 1125, 1714, 1935, 2026, 2038
BssNAI GTATAC 4 cut(s) 223, 1002, 1221, 1431
BssSI CACGAG 1 cut(s) 1865
BssT1I CCWWGG 3 cut(s) 31, 354, 1629
Bst1107I GTATAC 4 cut(s) 223, 1002, 1221, 1431
Bst2BI CACGAG 1 cut(s) 1865
Bst2UI CCWGG 1 cut(s) 560
Bst4CI ACNGT 7 cut(s) 488, 593, 725, 1343, 1475, 1664, 1945
Bst6I CTCTTC 1 cut(s) 2100
BstAPI GCANNNNNTGC 1 cut(s) 609
BstAUI TGTACA 1 cut(s) 1319
BstBAI YACGTR 2 cut(s) 1218, 1428
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 5 cut(s) 610, 948, 1413, 1562, 2055
BstDEI CTNAG 6 cut(s) 23, 365, 507, 1047, 1909, 2112
BstDSI CCRYGG 2 cut(s) 31, 354
BstEII GGTNACC 1 cut(s) 199
BstENI CCTNNNNNAGG 1 cut(s) 1558
BstF5I GGATG 5 cut(s) 62, 1288, 1643, 1675, 1713
BstFNI CGCG 1 cut(s) 1013
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 6 cut(s) 283, 1128, 1717, 1938, 2029, 2041
BstMAI GTCTC 2 cut(s) 1349, 1628
BstMBI GATC 6 cut(s) 280, 1125, 1714, 1935, 2026, 2038
BstMWI GCNNNNNNNGC 8 cut(s) 55, 140, 143, 146, 149, 152, 609, 1105
BstNI CCWGG 1 cut(s) 560
BstNSI RCATGY 1 cut(s) 2073
BstPI GGTNACC 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 347, 558, 1728
BstSFI CTRYAG 2 cut(s) 1558, 1663
BstSLI GKGCMC 1 cut(s) 1480
BstSNI TACGTA 1 cut(s) 1218
BstUI CGCG 1 cut(s) 1013
BstV1I GCAGC 3 cut(s) 517, 1537, 2006
BstX2I RGATCY 1 cut(s) 1935
BstXI CCANNNNNNTGG 1 cut(s) 1900
BstYI RGATCY 1 cut(s) 1935
BstZ17I GTATAC 4 cut(s) 223, 1002, 1221, 1431
BsuRI GGCC 5 cut(s) 347, 362, 564, 1395, 1628
BtgI CCRYGG 2 cut(s) 31, 354
BtgZI GCGATG 1 cut(s) 1136
BtsCI GGATG 5 cut(s) 62, 1288, 1643, 1675, 1713
BtsI GCAGTG 2 cut(s) 1450, 1893
BtsIMutI CAGTG 5 cut(s) 105, 484, 1135, 1450, 1893
Cac8I GCNNGC 5 cut(s) 610, 948, 1413, 1562, 2055
CaiI CAGNNNCTG 1 cut(s) 1347
CfoI GCGC 1 cut(s) 434
Cfr13I GGNCC 6 cut(s) 351, 361, 468, 562, 1363, 1393
CseI GACGC 1 cut(s) 834
Csp6I GTAC 3 cut(s) 576, 1320, 1660
CspCI CAANNNNNGTGG 2 cut(s) 1528, 1563
CviQI GTAC 3 cut(s) 576, 1320, 1660
DdeI CTNAG 6 cut(s) 23, 365, 507, 1047, 1909, 2112
DpnI GATC 6 cut(s) 282, 1127, 1716, 1937, 2028, 2040
DpnII GATC 6 cut(s) 280, 1125, 1714, 1935, 2026, 2038
DraI TTTAAA 1 cut(s) 523
DraIII CACNNNGTG 1 cut(s) 1838
DriI GACNNNNNGTC 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 1626
Eam1104I CTCTTC 1 cut(s) 2100
Eam1105I GACNNNNNGTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 2100
EciI GGCGGA 2 cut(s) 121, 755
Eco105I TACGTA 1 cut(s) 1218
Eco130I CCWWGG 3 cut(s) 31, 354, 1629
Eco24I GRGCYC 1 cut(s) 1767
Eco31I GGTCTC 1 cut(s) 1628
Eco47I GGWCC 3 cut(s) 351, 468, 1363
Eco57I CTGAAG 1 cut(s) 1091
Eco91I GGTNACC 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 1558
EcoO109I RGGNCCY 3 cut(s) 468, 562, 1393
EcoO65I GGTNACC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 558
EcoT14I CCWWGG 3 cut(s) 31, 354, 1629
EcoT38I GRGCYC 1 cut(s) 1767
ErhI CCWWGG 3 cut(s) 31, 354, 1629
FbaI TGATCA 2 cut(s) 1125, 1714
FblI GTMKAC 4 cut(s) 222, 1001, 1220, 1430
FokI GGATG 5 cut(s) 49, 1295, 1630, 1682, 1720
FriOI GRGCYC 1 cut(s) 1767
FspBI CTAG 5 cut(s) 792, 1481, 1848, 1919, 2137
GlaI GCGC 1 cut(s) 433
GsaI CCCAGC 1 cut(s) 1254
HaeIII GGCC 5 cut(s) 347, 362, 564, 1395, 1628
HapII CCGG 4 cut(s) 348, 1081, 1625, 1730
HgaI GACGC 1 cut(s) 834
HhaI GCGC 1 cut(s) 434
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HincII GTYRAC 3 cut(s) 898, 1854, 1948
HindII GTYRAC 3 cut(s) 898, 1854, 1948
HindIII AAGCTT 3 cut(s) 1073, 1371, 1964
HinfI GANTC 8 cut(s) 36, 110, 173, 185, 293, 1422, 1621, 2118
HpaI GTTAAC 2 cut(s) 898, 1948
HpaII CCGG 4 cut(s) 348, 1081, 1625, 1730
HphI GGTGA 6 cut(s) 193, 252, 505, 892, 1475, 1824
Hpy166II GTNNAC 8 cut(s) 223, 484, 898, 1002, 1221, 1431, 1854, 1948
Hpy188III TCNNGA 9 cut(s) 85, 278, 290, 547, 677, 1081, 1865, 1933, 1960
Hpy8I GTNNAC 8 cut(s) 223, 484, 898, 1002, 1221, 1431, 1854, 1948
Hpy99I CGWCG 3 cut(s) 326, 344, 653
HpyAV CCTTC 7 cut(s) 112, 820, 1180, 1292, 1384, 1406, 1564
HpyCH4III ACNGT 7 cut(s) 488, 593, 725, 1343, 1475, 1664, 1945
HpyCH4IV ACGT 4 cut(s) 642, 905, 1217, 1427
HpyF10VI GCNNNNNNNGC 8 cut(s) 55, 140, 143, 146, 149, 152, 609, 1105
HpyF3I CTNAG 6 cut(s) 23, 365, 507, 1047, 1909, 2112
HpySE526I ACGT 4 cut(s) 642, 905, 1217, 1427
HspAI GCGC 1 cut(s) 432
Kpn2I TCCGGA 1 cut(s) 1080
Ksp22I TGATCA 2 cut(s) 1125, 1714
KspAI GTTAAC 2 cut(s) 898, 1948
Kzo9I GATC 6 cut(s) 280, 1125, 1714, 1935, 2026, 2038
LguI GCTCTTC 1 cut(s) 2100
LmnI GCTCC 3 cut(s) 131, 1312, 1516
Lsp1109I GCAGC 3 cut(s) 517, 1537, 2006
LweI GCATC 2 cut(s) 540, 670
MaeI CTAG 5 cut(s) 792, 1481, 1848, 1919, 2137
MaeII ACGT 4 cut(s) 642, 905, 1217, 1427
MaeIII GTNAC 5 cut(s) 199, 1423, 1830, 1843, 2044
MalI GATC 6 cut(s) 282, 1127, 1716, 1937, 2028, 2040
MboI GATC 6 cut(s) 280, 1125, 1714, 1935, 2026, 2038
MboII GAAGA 7 cut(s) 249, 364, 418, 1307, 1690, 1990, 2087
MflI RGATCY 1 cut(s) 1935
MhlI GDGCHC 4 cut(s) 1452, 1480, 1753, 1767
MluCI AATT 9 cut(s) 18, 398, 457, 889, 1196, 1255, 1274, 2012, 2130
MlyI GAGTC 3 cut(s) 30, 104, 1431
MmeI TCCRAC 5 cut(s) 64, 363, 942, 965, 1022
MroI TCCGGA 1 cut(s) 1080
MroXI GAANNNNTTC 4 cut(s) 480, 644, 1200, 1592
MseI TTAA 8 cut(s) 522, 623, 693, 897, 942, 1386, 1470, 1947
MslI CAYNNNNRTG 1 cut(s) 1898
MspI CCGG 4 cut(s) 348, 1081, 1625, 1730
MspR9I CCNGG 3 cut(s) 349, 560, 1730
MvaI CCWGG 1 cut(s) 560
MvnI CGCG 1 cut(s) 1013
MwoI GCNNNNNNNGC 8 cut(s) 55, 140, 143, 146, 149, 152, 609, 1105
NciI CCSGG 2 cut(s) 349, 1730
NcoI CCATGG 2 cut(s) 31, 354
NdeII GATC 6 cut(s) 280, 1125, 1714, 1935, 2026, 2038
NlaIV GGNNCC 6 cut(s) 352, 470, 1364, 1477, 1518, 1937
NmeAIII GCCGAG 1 cut(s) 1427
NmuCI GTSAC 4 cut(s) 199, 1423, 1830, 2044
NspI RCATGY 1 cut(s) 2073
NspV TTCGAA 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 2100
PcsI WCGNNNNNNNCGW 2 cut(s) 318, 648
PdmI GAANNNNTTC 4 cut(s) 480, 644, 1200, 1592
PfeI GAWTC 5 cut(s) 173, 185, 293, 1621, 2118
PflMI CCANNNNNTGG 1 cut(s) 478
PleI GAGTC 3 cut(s) 30, 104, 1430
PpsI GAGTC 3 cut(s) 30, 104, 1430
Ppu21I YACGTR 2 cut(s) 1218, 1428
PpuMI RGGWCCY 1 cut(s) 468
PsiI TTATAA 3 cut(s) 809, 1095, 1377
Psp5II RGGWCCY 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 558
PspEI GGTNACC 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 1250
PspGI CCWGG 1 cut(s) 558
PspN4I GGNNCC 6 cut(s) 352, 470, 1364, 1477, 1518, 1937
PspPI GGNCC 6 cut(s) 351, 361, 468, 562, 1363, 1393
PspPPI RGGWCCY 1 cut(s) 468
PstI CTGCAG 1 cut(s) 1562
PstNI CAGNNNCTG 1 cut(s) 1347
PsuI RGATCY 1 cut(s) 1935
RsaI GTAC 3 cut(s) 577, 1321, 1661
RsaNI GTAC 3 cut(s) 576, 1320, 1660
RseI CAYNNNNRTG 1 cut(s) 1898
SapI GCTCTTC 1 cut(s) 2100
SaqAI TTAA 8 cut(s) 522, 623, 693, 897, 942, 1386, 1470, 1947
Sau3AI GATC 6 cut(s) 280, 1125, 1714, 1935, 2026, 2038
Sau96I GGNCC 6 cut(s) 351, 361, 468, 562, 1363, 1393
ScaI AGTACT 1 cut(s) 577
SchI GAGTC 3 cut(s) 30, 104, 1431
ScrFI CCNGG 3 cut(s) 349, 560, 1730
SduI GDGCHC 4 cut(s) 1452, 1480, 1753, 1767
SfaNI GCATC 2 cut(s) 540, 670
SfcI CTRYAG 2 cut(s) 1558, 1663
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 3 cut(s) 351, 468, 1363
SmiMI CAYNNNNRTG 1 cut(s) 1898
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SnaBI TACGTA 1 cut(s) 1218
Sse9I AATT 9 cut(s) 18, 398, 457, 889, 1196, 1255, 1274, 2012, 2130
SspI AATATT 1 cut(s) 1678
SspMI CTAG 5 cut(s) 792, 1481, 1848, 1919, 2137
StyD4I CCNGG 3 cut(s) 347, 558, 1728
StyI CCWWGG 3 cut(s) 31, 354, 1629
TaaI ACNGT 7 cut(s) 488, 593, 725, 1343, 1475, 1664, 1945
TaiI ACGT 4 cut(s) 645, 908, 1220, 1430
TaqI TCGA 6 cut(s) 16, 403, 440, 546, 648, 858
TasI AATT 9 cut(s) 18, 398, 457, 889, 1196, 1255, 1274, 2012, 2130
TatI WGTACW 2 cut(s) 575, 1319
TauI GCSGC 8 cut(s) 137, 140, 143, 146, 149, 152, 155, 418
TfiI GAWTC 5 cut(s) 173, 185, 293, 1621, 2118
Tru1I TTAA 8 cut(s) 522, 623, 693, 897, 942, 1386, 1470, 1947
Tru9I TTAA 8 cut(s) 522, 623, 693, 897, 942, 1386, 1470, 1947
TscAI CASTG 5 cut(s) 112, 491, 1135, 1457, 1900
TseFI GTSAC 4 cut(s) 199, 1423, 1830, 2044
TseI GCWGC 3 cut(s) 530, 1550, 1994
Tsp45I GTSAC 4 cut(s) 199, 1423, 1830, 2044
TspDTI ATGAA 7 cut(s) 132, 489, 1199, 1287, 1429, 1521, 1589
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 5 cut(s) 112, 491, 1135, 1457, 1900
Van91I CCANNNNNTGG 1 cut(s) 478
VpaK11BI GGWCC 3 cut(s) 351, 468, 1363
XagI CCTNNNNNAGG 1 cut(s) 1558
XapI RAATTY 4 cut(s) 18, 398, 889, 1255
XceI RCATGY 1 cut(s) 2073
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XmiI GTMKAC 4 cut(s) 222, 1001, 1220, 1430
XmnI GAANNNNTTC 4 cut(s) 480, 644, 1200, 1592
XspI CTAG 5 cut(s) 792, 1481, 1848, 1919, 2137
ZrmI AGTACT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.