Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007335

Physical Location & Seq

Genomic Coordinates Forward (+)

6882087 .. 6882663

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG067500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTATACAAATTCTACTTCCCACAAACCCATTTCAAATCATTACCTCCAAAGCTCAATCTTGATCTAAACCCCGATTCTTTGACCCACGAACACGCCATTTCCGTCTTGGCTTGGCTGGCCAACGAGGCCGGGTCCATGGTGGTCCTAAGCTTTTTCTACTGGGCAACTGGGTTTGCGAAATTTCGATACTTTATGCGGCTTTATATCTTCTGCGCCATGTCGATTTTCGGCAATGGTAATGTGGAGAGGACCCATGAAGTGGTTCAGTGTATGGTGAGGAGTTTCGCTGAGATTGGAATCAGAGATGCAGTCGAGGTTGATGGCGACGATAAACCACAACTCTCCGAGCTCACAATTTCCAGCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

123

Amino Acids

14.02

Weight (kDa)

5.73

Isoelectric Point (pI)

24.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19890
fragaria_vesca	FvH4_3g12270 FvH4_3g12270 FvH4_3g12270
malus_domestica	MD05G1251800.v1.1
prunus_persica	Prupe.4G111800_v2.0.a1
pyrus_communis	pycom05g22980 pycom10g19560
rosa_chinensis	RchiOBHm_Chr5g0020081 RchiOBHm_Chr7g0211421
rosa_laevigata	RLG00000032497
rosa_multiflora	Rmu_sc0021557.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058120
rosa_rugosa	Rorug05G0056700
rosa_samantha	Rh5AG146800 Rh5BG146300 Rh5CG157900 Rh5DG145800 Rh6CG070300 Rh6DG067500 Rh7AG292200 Rh7CG312200 Rh7DG257000 Rh7DG263700
rosa_wichuraiana	Rw5G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	2 cut(s)	199, 366
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	11, 182
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	37
AluBI	AGCT	3 cut(s)	55, 153, 352
AluI	AGCT	3 cut(s)	55, 153, 352
Alw21I	GWGCWC	1 cut(s)	354
AoxI	GGCC	2 cut(s)	120, 129
ApoI	RAATTY	2 cut(s)	11, 182
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	135, 145, 252
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	3 cut(s)	135, 145, 252
BalI	TGGCCA	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	354
BccI	CCATC	1 cut(s)	317
BcnI	CCSGG	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	3 cut(s)	135, 145, 252
BmgT120I	GGNCC	3 cut(s)	135, 145, 252
BmiI	GGNNCC	2 cut(s)	136, 254
BmrFI	CCNGG	1 cut(s)	133
BmrI	ACTGGG	2 cut(s)	172, 180
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	2 cut(s)	172, 180
Bpu10I	CCTNAGC	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	133
BsaBI	GATNNNNATC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	167, 175
Bse3DI	GCAATG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	167, 175
BseRI	GAGGAG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	122, 131
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	262
BsnI	GGCC	2 cut(s)	122, 131
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	2 cut(s)	199, 366
BspANI	GGCC	2 cut(s)	122, 131
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	136, 254
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	167, 175
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	64
BssNAI	GTATAC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	138
Bst1107I	GTATAC	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	149, 291
BstDSI	CCRYGG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 128
BstSCI	CCNGG	1 cut(s)	131
BstZ17I	GTATAC	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	122, 131
BtgI	CCRYGG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	135, 145, 252
CviAII	CATG	3 cut(s)	139, 220, 257
CviJI	RGCY	8 cut(s)	55, 113, 118, 122, 131, 153, 202, 352
CviKI_1	RGCY	8 cut(s)	55, 113, 118, 122, 131, 153, 202, 352
DdeI	CTNAG	2 cut(s)	149, 291
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	3 cut(s)	135, 145, 252
Eco53kI	GAGCTC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	142, 223, 260
FaiI	YATR	7 cut(s)	7, 140, 197, 207, 221, 258, 275
FatI	CATG	3 cut(s)	138, 219, 256
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	200
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	122, 131
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	142, 223, 260
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	2 cut(s)	77, 300
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	305, 349
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	332
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 128
HpyF3I	CTNAG	2 cut(s)	149, 291
Hsp92II	CATG	3 cut(s)	142, 223, 260
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	4 cut(s)	104, 145, 148, 156
LweI	GCATC	1 cut(s)	298
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	3 cut(s)	11, 182, 357
MluNI	TGGCCA	1 cut(s)	122
MnlI	CCTC	5 cut(s)	57, 121, 243, 273, 310
Mox20I	TGGCCA	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	366
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	119, 128
NciI	CCSGG	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	142, 223, 260
NlaIV	GGNNCC	2 cut(s)	136, 254
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	77, 300
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	201
PpuMI	RGGWCCY	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	136, 254
PspPI	GGNCC	3 cut(s)	135, 145, 252
PspPPI	RGGWCCY	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	354
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	3 cut(s)	135, 145, 252
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	5 cut(s)	49, 57, 155, 321, 354
SfaNI	GCATC	1 cut(s)	298
SfiI	GGCCNNNNNGGCC	1 cut(s)	128
SinI	GGWCC	3 cut(s)	135, 145, 252
Sse9I	AATT	3 cut(s)	11, 182, 357
SsiI	CCGC	2 cut(s)	199, 366
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	3 cut(s)	187, 224, 315
TasI	AATT	3 cut(s)	11, 182, 357
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	77, 300
TscAI	CASTG	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	3 cut(s)	135, 145, 252
XapI	RAATTY	2 cut(s)	11, 182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	6
XmnI	GAANNNNTTC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.