Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007335

Physical Location & Seq

Genomic Coordinates Reverse (-)

28599198 .. 28599662

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18915

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTATACAAATTCTATTTCCCGCAAACCCATTTCAAATCGTCACCTCCAAAGCTCAATCTTGATCTAAACCCCGATTCTTTGACCCACGAACACACCATTTCAGTCTTCGCTTGGCTGGCTGACGAGGCCAGGTCCATGGTGGCCCTAAGCTTTTTCTACTGGGCAACTGGGTTTGCGAAATTTCGATACTTTATGCGGCTTTATATCTTCTACGCCATGTCGATTTTCGGTAATGGTAATGTGGAGAGGACCCATGAAGTGGTTCAGTGTATGGTGAGGAGTTTTGTTGAGATTGGAATCAGAGATGCAGTCGAGGTCGATGGCGACGACAAACCACAAGTCTCCGAGCTCACAATTTCCAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

123

Amino Acids

14.21

Weight (kDa)

5.73

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19890
fragaria_vesca	FvH4_3g12270 FvH4_3g12270 FvH4_3g12270
malus_domestica	MD05G1251800.v1.1
prunus_persica	Prupe.4G111800_v2.0.a1
pyrus_communis	pycom05g22980 pycom10g19560
rosa_chinensis	RchiOBHm_Chr5g0020081 RchiOBHm_Chr7g0211421
rosa_laevigata	RLG00000032497
rosa_multiflora	Rmu_sc0021557.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058120
rosa_rugosa	Rorug05G0056700
rosa_samantha	Rh5AG146800 Rh5BG146300 Rh5CG157900 Rh5DG145800 Rh6CG070300 Rh6DG067500 Rh7AG292200 Rh7CG312200 Rh7DG257000 Rh7DG263700
rosa_wichuraiana	Rw5G012970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	2 cut(s)	23, 199
AcsI	RAATTY	2 cut(s)	11, 182
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	3 cut(s)	55, 153, 352
AluI	AGCT	3 cut(s)	55, 153, 352
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	349
AoxI	GGCC	2 cut(s)	129, 144
ApoI	RAATTY	2 cut(s)	11, 182
ArsI	GACNNNNNNTTYG	2 cut(s)	327, 359
Asp700I	GAANNNNTTC	1 cut(s)	264
AspS9I	GGNCC	3 cut(s)	135, 145, 252
AsuHPI	GGTGA	2 cut(s)	36, 289
AvaII	GGWCC	2 cut(s)	135, 252
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	354
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	349
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	2 cut(s)	135, 252
BmgT120I	GGNCC	3 cut(s)	135, 145, 252
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	133
BmrI	ACTGGG	2 cut(s)	172, 180
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	2 cut(s)	172, 180
BpiI	GAAGAC	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	3 cut(s)	167, 175, 363
Bse8I	GATNNNNATC	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseNI	ACTGG	3 cut(s)	167, 175, 363
BseRI	GAGGAG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	131, 146
BsiHKAI	GWGCWC	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	131, 146
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	2 cut(s)	23, 199
BspANI	GGCC	2 cut(s)	131, 146
BspLI	GGNNCC	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	167, 175, 363
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	64
BssNAI	GTATAC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	138
Bst1107I	GTATAC	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 128
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstZ17I	GTATAC	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	131, 146
BtgI	CCRYGG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	275, 370
Cac8I	GCNNGC	1 cut(s)	120
Cfr13I	GGNCC	3 cut(s)	135, 145, 252
CviAII	CATG	3 cut(s)	139, 220, 257
CviJI	RGCY	8 cut(s)	55, 118, 122, 131, 146, 153, 202, 352
CviKI_1	RGCY	8 cut(s)	55, 118, 122, 131, 146, 153, 202, 352
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	2 cut(s)	135, 252
Eco53kI	GAGCTC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	142, 223, 260
FaiI	YATR	7 cut(s)	7, 140, 197, 207, 221, 258, 275
FatI	CATG	3 cut(s)	138, 219, 256
FauI	CCCGC	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	131, 146
Hin1II	CATG	3 cut(s)	142, 223, 260
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	2 cut(s)	77, 300
HphI	GGTGA	2 cut(s)	36, 289
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	305, 349
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	332
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 128
HpyF3I	CTNAG	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	142, 223, 260
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	104, 118, 145, 148, 156
LweI	GCATC	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	100, 202
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	3 cut(s)	11, 182, 357
MnlI	CCTC	5 cut(s)	57, 121, 243, 273, 310
MroXI	GAANNNNTTC	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	119, 128
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	142, 223, 260
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	77, 300
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	201
PpuMI	RGGWCCY	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	3 cut(s)	135, 145, 252
PspPPI	RGGWCCY	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	354
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	3 cut(s)	135, 145, 252
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	6 cut(s)	49, 57, 137, 155, 321, 354
SfaNI	GCATC	1 cut(s)	298
SinI	GGWCC	2 cut(s)	135, 252
Sse9I	AATT	3 cut(s)	11, 182, 357
SsiI	CCGC	2 cut(s)	23, 199
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	4 cut(s)	187, 224, 315, 321
TasI	AATT	3 cut(s)	11, 182, 357
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	77, 300
TscAI	CASTG	2 cut(s)	275, 370
TseFI	GTSAC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	2 cut(s)	275, 370
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	135, 252
XapI	RAATTY	2 cut(s)	11, 182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	6
XmnI	GAANNNNTTC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.