Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G19890 |
| fragaria_vesca | FvH4_3g12270 FvH4_3g12270 FvH4_3g12270 |
| malus_domestica | MD05G1251800.v1.1 |
| prunus_persica | Prupe.4G111800_v2.0.a1 |
| pyrus_communis | pycom05g22980 pycom10g19560 |
| rosa_chinensis | RchiOBHm_Chr5g0020081 RchiOBHm_Chr7g0211421 |
| rosa_laevigata | RLG00000032497 |
| rosa_multiflora | Rmu_sc0021557.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00058120 |
| rosa_rugosa | Rorug05G0056700 |
| rosa_samantha | Rh5AG146800 Rh5BG146300 Rh5CG157900 Rh5DG145800 Rh6CG070300 Rh6DG067500 Rh7AG292200 Rh7CG312200 Rh7DG257000 Rh7DG263700 |
| rosa_wichuraiana | Rw5G012970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 288, 407, 1073 |
| Acc16I | TGCGCA | 1 cut(s) | 2329 |
| Acc36I | ACCTGC | 1 cut(s) | 2234 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 876, 2374, 3604, 3931 |
| AccI | GTMKAC | 7 cut(s) | 2118, 2897, 3116, 3326, 3431, 3845, 3915 |
| AccII | CGCG | 1 cut(s) | 3057 |
| AccIII | TCCGGA | 1 cut(s) | 2976 |
| AclWI | GGATC | 4 cut(s) | 1454, 3826, 3839, 4022 |
| AcoI | YGGCCR | 1 cut(s) | 1740 |
| AcsI | RAATTY | 9 cut(s) | 245, 617, 1336, 1618, 1777, 1908, 2395, 2785, 3170 |
| AcuI | CTGAAG | 1 cut(s) | 1955 |
| AfaI | GTAC | 7 cut(s) | 901, 1408, 1628, 1697, 2473, 3003, 3767 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 876, 1257, 2206, 2374, 3304, 3456, 3604, 3931 |
| AflII | CTTAAG | 1 cut(s) | 2966 |
| AflIII | ACRYGT | 4 cut(s) | 999, 1006, 2709, 3111 |
| AhlI | ACTAGT | 1 cut(s) | 1519 |
| AjiI | CACGTC | 1 cut(s) | 2635 |
| AjnI | CCWGG | 1 cut(s) | 3375 |
| AleI | CACNNNNGTG | 1 cut(s) | 609 |
| Alw21I | GWGCWC | 4 cut(s) | 1306, 1587, 3348, 3649 |
| Alw26I | GTCTC | 4 cut(s) | 676, 2574, 3245, 3745 |
| Alw44I | GTGCAC | 1 cut(s) | 1302 |
| AlwI | GGATC | 4 cut(s) | 1454, 3826, 3839, 4022 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3243 |
| Ama87I | CYCGRG | 1 cut(s) | 2660 |
| Aor13HI | TCCGGA | 1 cut(s) | 2976 |
| AoxI | GGCC | 6 cut(s) | 1740, 1787, 1792, 2208, 3288, 3372 |
| ApaI | GGGCCC | 1 cut(s) | 3376 |
| ApaLI | GTGCAC | 1 cut(s) | 1302 |
| ApeKI | GCWGC | 9 cut(s) | 576, 2426, 2832, 3308, 3412, 3446, 3791, 3890, 3950 |
| ApoI | RAATTY | 9 cut(s) | 245, 617, 1336, 1618, 1777, 1908, 2395, 2785, 3170 |
| AseI | ATTAAT | 7 cut(s) | 455, 1461, 1733, 1805, 2793, 2811, 3366 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1050, 2540 |
| AspLEI | GCGC | 4 cut(s) | 2260, 2330, 3059, 3625 |
| AspS9I | GGNCC | 7 cut(s) | 1595, 1788, 1793, 3372, 3373, 3922, 3934 |
| AsuC2I | CCSGG | 1 cut(s) | 1791 |
| AsuHPI | GGTGA | 5 cut(s) | 1451, 2401, 2881, 3409, 3620 |
| AvaI | CYCGRG | 1 cut(s) | 2660 |
| AvaII | GGWCC | 3 cut(s) | 1595, 3922, 3934 |
| BaeGI | GKGCMC | 2 cut(s) | 1306, 3376 |
| BamHI | GGATCC | 1 cut(s) | 3831 |
| BanII | GRGCYC | 5 cut(s) | 1587, 2368, 2925, 3376, 3663 |
| BauI | CACGAG | 1 cut(s) | 2201 |
| BbsI | GAAGAC | 1 cut(s) | 592 |
| Bbv12I | GWGCWC | 4 cut(s) | 1306, 1587, 3348, 3649 |
| BbvI | GCAGC | 9 cut(s) | 563, 2413, 2844, 3320, 3424, 3433, 3778, 3902, 3962 |
| BccI | CCATC | 6 cut(s) | 345, 2151, 3388, 3560, 3598, 3706 |
| BciT130I | CCWGG | 1 cut(s) | 3377 |
| BclI | TGATCA | 3 cut(s) | 201, 2700, 3021 |
| BcnI | CCSGG | 1 cut(s) | 1791 |
| BcoDI | GTCTC | 4 cut(s) | 676, 2574, 3245, 3745 |
| BcuI | ACTAGT | 1 cut(s) | 1519 |
| BfaI | CTAG | 6 cut(s) | 1299, 1520, 3125, 3744, 3815, 4033 |
| BfmI | CTRYAG | 2 cut(s) | 1783, 3454 |
| BfoI | RGCGCY | 1 cut(s) | 2261 |
| BfrI | CTTAAG | 1 cut(s) | 2966 |
| BfuAI | ACCTGC | 1 cut(s) | 2234 |
| BglII | AGATCT | 1 cut(s) | 2150 |
| BmcAI | AGTACT | 3 cut(s) | 901, 2473, 3767 |
| Bme1390I | CCNGG | 2 cut(s) | 1791, 3377 |
| Bme18I | GGWCC | 3 cut(s) | 1595, 3922, 3934 |
| BmeT110I | CYCGRG | 1 cut(s) | 2660 |
| BmgBI | CACGTC | 1 cut(s) | 2635 |
| BmgT120I | GGNCC | 7 cut(s) | 1595, 1788, 1793, 3372, 3373, 3922, 3934 |
| BmiI | GGNNCC | 6 cut(s) | 1597, 1872, 2248, 3373, 3374, 3833 |
| BmrFI | CCNGG | 2 cut(s) | 1791, 3377 |
| BmrI | ACTGGG | 1 cut(s) | 2284 |
| BmsI | GCATC | 4 cut(s) | 141, 376, 2646, 2696 |
| BmuI | ACTGGG | 1 cut(s) | 2284 |
| BpiI | GAAGAC | 1 cut(s) | 592 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 796, 828, 4001, 4033 |
| BpmI | CTGGAG | 2 cut(s) | 898, 2378 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2235 |
| BpuEI | CTTGAG | 3 cut(s) | 628, 2602, 3512 |
| BpuMI | CCSGG | 1 cut(s) | 1791 |
| BsaAI | YACGTR | 3 cut(s) | 1007, 3114, 3324 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1711 |
| BsaJI | CCNNGG | 4 cut(s) | 2250, 3298, 3375, 3525 |
| BsaWI | WCCGGW | 3 cut(s) | 1257, 1592, 2976 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2015, 2045 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 876, 1257, 2206, 2374, 3304, 3456, 3604, 3931 |
| Bse1I | ACTGG | 3 cut(s) | 881, 2235, 2279 |
| Bse3DI | GCAATG | 4 cut(s) | 476, 1524, 2337, 2353 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1711 |
| BseAI | TCCGGA | 1 cut(s) | 2976 |
| BseBI | CCWGG | 1 cut(s) | 3377 |
| BseDI | CCNNGG | 4 cut(s) | 2250, 3298, 3375, 3525 |
| BseGI | GGATG | 5 cut(s) | 156, 3084, 3539, 3571, 3609 |
| BseJI | GATNNNNATC | 1 cut(s) | 1711 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 876, 1257, 2206, 2374, 3304, 3456, 3604, 3931 |
| BseMI | GCAATG | 4 cut(s) | 476, 1524, 2337, 2353 |
| BseNI | ACTGG | 3 cut(s) | 881, 2235, 2279 |
| BseRI | GAGGAG | 1 cut(s) | 626 |
| BseSI | GKGCMC | 2 cut(s) | 1306, 3376 |
| BseXI | GCAGC | 9 cut(s) | 563, 2413, 2844, 3320, 3424, 3433, 3778, 3902, 3962 |
| BseYI | CCCAGC | 1 cut(s) | 3146 |
| Bsh1236I | CGCG | 1 cut(s) | 3057 |
| BshFI | GGCC | 6 cut(s) | 1742, 1789, 1794, 2210, 3290, 3374 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1306, 1587, 3348, 3649 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2660 |
| BsiSI | CCGG | 4 cut(s) | 1258, 1593, 1791, 2977 |
| BslFI | GGGAC | 2 cut(s) | 42, 1581 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 876, 1257, 2206, 2374, 3304, 3456, 3604, 3931 |
| BsmAI | GTCTC | 4 cut(s) | 676, 2574, 3245, 3745 |
| BsmFI | GGGAC | 2 cut(s) | 42, 1581 |
| BsmI | GAATGC | 1 cut(s) | 1025 |
| BsnI | GGCC | 6 cut(s) | 1742, 1789, 1794, 2210, 3290, 3374 |
| BsoBI | CYCGRG | 1 cut(s) | 2660 |
| Bsp120I | GGGCCC | 1 cut(s) | 3372 |
| Bsp1286I | GDGCHC | 8 cut(s) | 1306, 1587, 2368, 2925, 3348, 3376, 3649, 3663 |
| Bsp13I | TCCGGA | 1 cut(s) | 2976 |
| Bsp1407I | TGTACA | 2 cut(s) | 1695, 3001 |
| Bsp143I | GATC | 9 cut(s) | 201, 1166, 1446, 2103, 2150, 2700, 3021, 3831, 4014 |
| Bsp19I | CCATGG | 1 cut(s) | 2250 |
| BspANI | GGCC | 6 cut(s) | 1742, 1789, 1794, 2210, 3290, 3374 |
| BspEI | TCCGGA | 1 cut(s) | 2976 |
| BspFNI | CGCG | 1 cut(s) | 3057 |
| BspHI | TCATGA | 1 cut(s) | 198 |
| BspLI | GGNNCC | 6 cut(s) | 1597, 1872, 2248, 3373, 3374, 3833 |
| BspMAI | CTGCAG | 1 cut(s) | 3458 |
| BspMI | ACCTGC | 1 cut(s) | 2234 |
| BspPI | GGATC | 4 cut(s) | 1454, 3826, 3839, 4022 |
| BspTI | CTTAAG | 1 cut(s) | 2966 |
| BsrDI | GCAATG | 4 cut(s) | 476, 1524, 2337, 2353 |
| BsrGI | TGTACA | 2 cut(s) | 1695, 3001 |
| BsrI | ACTGG | 3 cut(s) | 881, 2235, 2279 |
| BssECI | CCNNGG | 4 cut(s) | 2250, 3298, 3375, 3525 |
| BssMI | GATC | 9 cut(s) | 201, 1166, 1446, 2103, 2150, 2700, 3021, 3831, 4014 |
| BssNAI | GTATAC | 6 cut(s) | 2119, 2898, 3117, 3327, 3432, 3846 |
| BssSI | CACGAG | 1 cut(s) | 2201 |
| BssT1I | CCWWGG | 2 cut(s) | 2250, 3525 |
| Bst1107I | GTATAC | 6 cut(s) | 2119, 2898, 3117, 3327, 3432, 3846 |
| Bst2BI | CACGAG | 1 cut(s) | 2201 |
| Bst2UI | CCWGG | 1 cut(s) | 3377 |
| Bst4CI | ACNGT | 9 cut(s) | 66, 560, 1311, 2908, 2961, 3239, 3644, 3841, 3938 |
| Bst6I | CTCTTC | 5 cut(s) | 646, 750, 1988, 2008, 3678 |
| BstAFI | CTTAAG | 1 cut(s) | 2966 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 953 |
| BstAUI | TGTACA | 2 cut(s) | 1695, 3001 |
| BstBAI | YACGTR | 3 cut(s) | 1007, 3114, 3324 |
| BstC8I | GCNNGC | 5 cut(s) | 574, 2208, 2506, 3458, 3967 |
| BstDSI | CCRYGG | 1 cut(s) | 2250 |
| BstEII | GGTNACC | 2 cut(s) | 1260, 3608 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3454 |
| BstF5I | GGATG | 5 cut(s) | 156, 3084, 3539, 3571, 3609 |
| BstFNI | CGCG | 1 cut(s) | 3057 |
| BstH2I | RGCGCY | 1 cut(s) | 2261 |
| BstHHI | GCGC | 4 cut(s) | 2260, 2330, 3059, 3625 |
| BstKTI | GATC | 9 cut(s) | 204, 1169, 1449, 2106, 2153, 2703, 3024, 3834, 4017 |
| BstMAI | GTCTC | 4 cut(s) | 676, 2574, 3245, 3745 |
| BstMBI | GATC | 9 cut(s) | 201, 1166, 1446, 2103, 2150, 2700, 3021, 3831, 4014 |
| BstNI | CCWGG | 1 cut(s) | 3377 |
| BstNSI | RCATGY | 4 cut(s) | 1003, 1333, 2713, 3969 |
| BstPI | GGTNACC | 2 cut(s) | 1260, 3608 |
| BstSCI | CCNGG | 2 cut(s) | 1789, 3375 |
| BstSFI | CTRYAG | 2 cut(s) | 1783, 3454 |
| BstSLI | GKGCMC | 2 cut(s) | 1306, 3376 |
| BstUI | CGCG | 1 cut(s) | 3057 |
| BstV1I | GCAGC | 9 cut(s) | 563, 2413, 2844, 3320, 3424, 3433, 3778, 3902, 3962 |
| BstV2I | GAAGAC | 1 cut(s) | 592 |
| BstX2I | RGATCY | 4 cut(s) | 1446, 2150, 3831, 4014 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1272 |
| BstYI | RGATCY | 4 cut(s) | 1446, 2150, 3831, 4014 |
| BstZ17I | GTATAC | 6 cut(s) | 2119, 2898, 3117, 3327, 3432, 3846 |
| BsuRI | GGCC | 6 cut(s) | 1742, 1789, 1794, 2210, 3290, 3374 |
| BtgI | CCRYGG | 1 cut(s) | 2250 |
| BtrI | CACGTC | 1 cut(s) | 2635 |
| BtsCI | GGATG | 5 cut(s) | 156, 3084, 3539, 3571, 3609 |
| BtsI | GCAGTG | 3 cut(s) | 28, 1872, 3346 |
| BtsIMutI | CAGTG | 4 cut(s) | 28, 1872, 2228, 3346 |
| BveI | ACCTGC | 1 cut(s) | 2234 |
| Cac8I | GCNNGC | 5 cut(s) | 574, 2208, 2506, 3458, 3967 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3243 |
| CciI | TCATGA | 1 cut(s) | 198 |
| CfoI | GCGC | 4 cut(s) | 2260, 2330, 3059, 3625 |
| Cfr13I | GGNCC | 7 cut(s) | 1595, 1788, 1793, 3372, 3373, 3922, 3934 |
| CseI | GACGC | 1 cut(s) | 2730 |
| Csp6I | GTAC | 7 cut(s) | 900, 1407, 1627, 1696, 2472, 3002, 3766 |
| CviQI | GTAC | 7 cut(s) | 900, 1407, 1627, 1696, 2472, 3002, 3766 |
| DpnI | GATC | 9 cut(s) | 203, 1168, 1448, 2105, 2152, 2702, 3023, 3833, 4016 |
| DpnII | GATC | 9 cut(s) | 201, 1166, 1446, 2103, 2150, 2700, 3021, 3831, 4014 |
| DraI | TTTAAA | 1 cut(s) | 907 |
| EaeI | YGGCCR | 1 cut(s) | 1740 |
| Eam1104I | CTCTTC | 5 cut(s) | 646, 750, 1988, 2008, 3678 |
| EarI | CTCTTC | 5 cut(s) | 646, 750, 1988, 2008, 3678 |
| Ecl136II | GAGCTC | 1 cut(s) | 1585 |
| Eco130I | CCWWGG | 2 cut(s) | 2250, 3525 |
| Eco147I | AGGCCT | 1 cut(s) | 3290 |
| Eco24I | GRGCYC | 5 cut(s) | 1587, 2368, 2925, 3376, 3663 |
| Eco47I | GGWCC | 3 cut(s) | 1595, 3922, 3934 |
| Eco53kI | GAGCTC | 1 cut(s) | 1585 |
| Eco57I | CTGAAG | 1 cut(s) | 1955 |
| Eco88I | CYCGRG | 1 cut(s) | 2660 |
| Eco91I | GGTNACC | 2 cut(s) | 1260, 3608 |
| EcoICRI | GAGCTC | 1 cut(s) | 1585 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3454 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3372, 3373 |
| EcoO65I | GGTNACC | 2 cut(s) | 1260, 3608 |
| EcoRI | GAATTC | 1 cut(s) | 1908 |
| EcoRII | CCWGG | 1 cut(s) | 3375 |
| EcoT14I | CCWWGG | 2 cut(s) | 2250, 3525 |
| EcoT22I | ATGCAT | 1 cut(s) | 2689 |
| EcoT38I | GRGCYC | 5 cut(s) | 1587, 2368, 2925, 3376, 3663 |
| ErhI | CCWWGG | 2 cut(s) | 2250, 3525 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 936, 968 |
| FaqI | GGGAC | 2 cut(s) | 42, 1581 |
| FauI | CCCGC | 1 cut(s) | 2142 |
| FauNDI | CATATG | 2 cut(s) | 1614, 3166 |
| FbaI | TGATCA | 3 cut(s) | 201, 2700, 3021 |
| FblI | GTMKAC | 7 cut(s) | 2118, 2897, 3116, 3326, 3431, 3845, 3915 |
| FokI | GGATG | 5 cut(s) | 163, 3091, 3526, 3578, 3616 |
| FriOI | GRGCYC | 5 cut(s) | 1587, 2368, 2925, 3376, 3663 |
| FspBI | CTAG | 6 cut(s) | 1299, 1520, 3125, 3744, 3815, 4033 |
| FspI | TGCGCA | 1 cut(s) | 2329 |
| GlaI | GCGC | 4 cut(s) | 2259, 2329, 3058, 3624 |
| GsaI | CCCAGC | 1 cut(s) | 3150 |
| GsuI | CTGGAG | 2 cut(s) | 898, 2378 |
| HaeII | RGCGCY | 1 cut(s) | 2261 |
| HaeIII | GGCC | 6 cut(s) | 1742, 1789, 1794, 2210, 3290, 3374 |
| HapII | CCGG | 4 cut(s) | 1258, 1593, 1791, 2977 |
| HgaI | GACGC | 1 cut(s) | 2730 |
| HhaI | GCGC | 4 cut(s) | 2260, 2330, 3059, 3625 |
| Hin6I | GCGC | 4 cut(s) | 2258, 2328, 3057, 3623 |
| HinP1I | GCGC | 4 cut(s) | 2258, 2328, 3057, 3623 |
| HindIII | AAGCTT | 2 cut(s) | 2969, 3860 |
| HpaII | CCGG | 4 cut(s) | 1258, 1593, 1791, 2977 |
| HphI | GGTGA | 5 cut(s) | 1451, 2401, 2881, 3409, 3620 |
| Hpy99I | CGWCG | 2 cut(s) | 2222, 2806 |
| HpyCH4III | ACNGT | 9 cut(s) | 66, 560, 1311, 2908, 2961, 3239, 3644, 3841, 3938 |
| HpyCH4IV | ACGT | 9 cut(s) | 938, 1006, 1060, 1200, 2480, 2634, 3113, 3323, 3930 |
| HpySE526I | ACGT | 9 cut(s) | 938, 1006, 1060, 1200, 2480, 2634, 3113, 3323, 3930 |
| HspAI | GCGC | 4 cut(s) | 2258, 2328, 3057, 3623 |
| Kpn2I | TCCGGA | 1 cut(s) | 2976 |
| Ksp22I | TGATCA | 3 cut(s) | 201, 2700, 3021 |
| Kzo9I | GATC | 9 cut(s) | 201, 1166, 1446, 2103, 2150, 2700, 3021, 3831, 4014 |
| LmnI | GCTCC | 3 cut(s) | 473, 1276, 2979 |
| Lsp1109I | GCAGC | 9 cut(s) | 563, 2413, 2844, 3320, 3424, 3433, 3778, 3902, 3962 |
| LweI | GCATC | 4 cut(s) | 141, 376, 2646, 2696 |
| MaeI | CTAG | 6 cut(s) | 1299, 1520, 3125, 3744, 3815, 4033 |
| MaeII | ACGT | 9 cut(s) | 938, 1006, 1060, 1200, 2480, 2634, 3113, 3323, 3930 |
| MaeIII | GTNAC | 6 cut(s) | 1002, 1260, 2088, 3319, 3608, 3940 |
| MalI | GATC | 9 cut(s) | 203, 1168, 1448, 2105, 2152, 2702, 3023, 3833, 4016 |
| MboI | GATC | 9 cut(s) | 201, 1166, 1446, 2103, 2150, 2700, 3021, 3831, 4014 |
| MfeI | CAATTG | 2 cut(s) | 1691, 2280 |
| MflI | RGATCY | 4 cut(s) | 1446, 2150, 3831, 4014 |
| MhlI | GDGCHC | 8 cut(s) | 1306, 1587, 2368, 2925, 3348, 3376, 3649, 3663 |
| MlyI | GAGTC | 1 cut(s) | 3776 |
| MmeI | TCCRAC | 4 cut(s) | 1954, 2838, 2861, 3385 |
| Mph1103I | ATGCAT | 1 cut(s) | 2689 |
| MroI | TCCGGA | 1 cut(s) | 2976 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1050, 2540 |
| MslI | CAYNNNNRTG | 7 cut(s) | 609, 837, 1270, 2019, 2708, 2804, 3618 |
| MspA1I | CMGCKG | 2 cut(s) | 3311, 3791 |
| MspCI | CTTAAG | 1 cut(s) | 2966 |
| MspI | CCGG | 4 cut(s) | 1258, 1593, 1791, 2977 |
| MspR9I | CCNGG | 2 cut(s) | 1791, 3377 |
| MunI | CAATTG | 2 cut(s) | 1691, 2280 |
| Mva1269I | GAATGC | 1 cut(s) | 1025 |
| MvaI | CCWGG | 1 cut(s) | 3377 |
| MvnI | CGCG | 1 cut(s) | 3057 |
| NciI | CCSGG | 1 cut(s) | 1791 |
| NcoI | CCATGG | 1 cut(s) | 2250 |
| NdeI | CATATG | 2 cut(s) | 1614, 3166 |
| NdeII | GATC | 9 cut(s) | 201, 1166, 1446, 2103, 2150, 2700, 3021, 3831, 4014 |
| NlaIV | GGNNCC | 6 cut(s) | 1597, 1872, 2248, 3373, 3374, 3833 |
| NmeAIII | GCCGAG | 1 cut(s) | 3323 |
| NmuCI | GTSAC | 4 cut(s) | 2088, 3319, 3608, 3940 |
| NsbI | TGCGCA | 1 cut(s) | 2329 |
| NsiI | ATGCAT | 1 cut(s) | 2689 |
| NspI | RCATGY | 4 cut(s) | 1003, 1333, 2713, 3969 |
| OliI | CACNNNNGTG | 1 cut(s) | 609 |
| PaeI | GCATGC | 1 cut(s) | 3969 |
| PaeR7I | CTCGAG | 1 cut(s) | 2660 |
| PagI | TCATGA | 1 cut(s) | 198 |
| PceI | AGGCCT | 1 cut(s) | 3290 |
| PciI | ACATGT | 2 cut(s) | 999, 2709 |
| PctI | GAATGC | 1 cut(s) | 1025 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1050, 2540 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 876, 2374, 3604, 3931 |
| PleI | GAGTC | 1 cut(s) | 3776 |
| PpsI | GAGTC | 1 cut(s) | 3776 |
| Ppu21I | YACGTR | 3 cut(s) | 1007, 3114, 3324 |
| PscI | ACATGT | 2 cut(s) | 999, 2709 |
| PshBI | ATTAAT | 7 cut(s) | 455, 1461, 1733, 1805, 2793, 2811, 3366 |
| PsiI | TTATAA | 3 cut(s) | 288, 407, 1073 |
| Psp124BI | GAGCTC | 1 cut(s) | 1587 |
| Psp6I | CCWGG | 1 cut(s) | 3375 |
| PspEI | GGTNACC | 2 cut(s) | 1260, 3608 |
| PspFI | CCCAGC | 1 cut(s) | 3146 |
| PspGI | CCWGG | 1 cut(s) | 3375 |
| PspN4I | GGNNCC | 6 cut(s) | 1597, 1872, 2248, 3373, 3374, 3833 |
| PspOMI | GGGCCC | 1 cut(s) | 3372 |
| PspPI | GGNCC | 7 cut(s) | 1595, 1788, 1793, 3372, 3373, 3922, 3934 |
| PstI | CTGCAG | 1 cut(s) | 3458 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3243 |
| PsuI | RGATCY | 4 cut(s) | 1446, 2150, 3831, 4014 |
| PvuII | CAGCTG | 1 cut(s) | 3311 |
| RsaI | GTAC | 7 cut(s) | 901, 1408, 1628, 1697, 2473, 3003, 3767 |
| RsaNI | GTAC | 7 cut(s) | 900, 1407, 1627, 1696, 2472, 3002, 3766 |
| RseI | CAYNNNNRTG | 7 cut(s) | 609, 837, 1270, 2019, 2708, 2804, 3618 |
| SacI | GAGCTC | 1 cut(s) | 1587 |
| Sau3AI | GATC | 9 cut(s) | 201, 1166, 1446, 2103, 2150, 2700, 3021, 3831, 4014 |
| Sau96I | GGNCC | 7 cut(s) | 1595, 1788, 1793, 3372, 3373, 3922, 3934 |
| ScaI | AGTACT | 3 cut(s) | 901, 2473, 3767 |
| SchI | GAGTC | 1 cut(s) | 3776 |
| ScrFI | CCNGG | 2 cut(s) | 1791, 3377 |
| SduI | GDGCHC | 8 cut(s) | 1306, 1587, 2368, 2925, 3348, 3376, 3649, 3663 |
| SfaNI | GCATC | 4 cut(s) | 141, 376, 2646, 2696 |
| SfcI | CTRYAG | 2 cut(s) | 1783, 3454 |
| Sfr274I | CTCGAG | 1 cut(s) | 2660 |
| SinI | GGWCC | 3 cut(s) | 1595, 3922, 3934 |
| SlaI | CTCGAG | 1 cut(s) | 2660 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 609, 837, 1270, 2019, 2708, 2804, 3618 |
| SmlI | CTYRAG | 5 cut(s) | 607, 2581, 2660, 2966, 3491 |
| SmoI | CTYRAG | 5 cut(s) | 607, 2581, 2660, 2966, 3491 |
| SpeI | ACTAGT | 1 cut(s) | 1519 |
| SphI | GCATGC | 1 cut(s) | 3969 |
| SseBI | AGGCCT | 1 cut(s) | 3290 |
| SspI | AATATT | 2 cut(s) | 1772, 3574 |
| SspMI | CTAG | 6 cut(s) | 1299, 1520, 3125, 3744, 3815, 4033 |
| SstI | GAGCTC | 1 cut(s) | 1587 |
| StuI | AGGCCT | 1 cut(s) | 3290 |
| StyD4I | CCNGG | 2 cut(s) | 1789, 3375 |
| StyI | CCWWGG | 2 cut(s) | 2250, 3525 |
| TaaI | ACNGT | 9 cut(s) | 66, 560, 1311, 2908, 2961, 3239, 3644, 3841, 3938 |
| TaiI | ACGT | 9 cut(s) | 941, 1009, 1063, 1203, 2483, 2637, 3116, 3326, 3933 |
| TaqI | TCGA | 8 cut(s) | 178, 1224, 2102, 2175, 2299, 2544, 2661, 2737 |
| TatI | WGTACW | 5 cut(s) | 899, 1695, 2471, 3001, 3765 |
| TscAI | CASTG | 4 cut(s) | 35, 1872, 2235, 3353 |
| TseFI | GTSAC | 4 cut(s) | 2088, 3319, 3608, 3940 |
| TseI | GCWGC | 9 cut(s) | 576, 2426, 2832, 3308, 3412, 3446, 3791, 3890, 3950 |
| Tsp45I | GTSAC | 4 cut(s) | 2088, 3319, 3608, 3940 |
| TspGWI | ACGGA | 1 cut(s) | 2206 |
| TspRI | CASTG | 4 cut(s) | 35, 1872, 2235, 3353 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 876, 2374, 3604, 3931 |
| Vha464I | CTTAAG | 1 cut(s) | 2966 |
| VneI | GTGCAC | 1 cut(s) | 1302 |
| VpaK11BI | GGWCC | 3 cut(s) | 1595, 3922, 3934 |
| VspI | ATTAAT | 7 cut(s) | 455, 1461, 1733, 1805, 2793, 2811, 3366 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3454 |
| XapI | RAATTY | 9 cut(s) | 245, 617, 1336, 1618, 1777, 1908, 2395, 2785, 3170 |
| XbaI | TCTAGA | 1 cut(s) | 3743 |
| XceI | RCATGY | 4 cut(s) | 1003, 1333, 2713, 3969 |
| XhoI | CTCGAG | 1 cut(s) | 2660 |
| XmiI | GTMKAC | 7 cut(s) | 2118, 2897, 3116, 3326, 3431, 3845, 3915 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1050, 2540 |
| XspI | CTAG | 6 cut(s) | 1299, 1520, 3125, 3744, 3815, 4033 |
| ZrmI | AGTACT | 3 cut(s) | 901, 2473, 3767 |
| Zsp2I | ATGCAT | 1 cut(s) | 2689 |