FvH4_3g12400

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006921
Physical Location & Seq
Reverse (-)
7371637 .. 7373800
2164 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12400.t2

Sequence Viewer

Length: 1341 bp
ATGGATTCTCTGAAAAACATACCTGCTTTGATATCAAAATGGTTATCAACTTGCGCCTCTATGGTTGTGTCCTTGTTGCTTCTGTTCTTCCCTGGCTTCTTAAAACGTTGGTTATCTGATCCTATGACCTTACAAATTGATGAATACCATGGAATCAGTAGTCGAAATCAACTTTTCGGTGCTTTGGAGCTTTACTTGCAGAACAAGATCAGCCCCTCCACTAGACTCCTCAAAATTGCGCAAACTCGGAAAGATAGTATTTTCAGCACTCACTTTTCAGACAACCAAGAATTTGAGGATGTGTATGAAGATATTCAGCTCAAGTGGAAGTTCAATATCATATCTAAAGAGTCCAATCACCACCCTTCTTTGGCATCCAAGAGAAAGCAATACTTCCAGCTTATATTCGACTTGGAACAAAAGGAAAAGGTCATGAATTCTTACTTGCCTTATGTTTTGGAGACATTTAAGGCCATGAAGGAGGAAAGGAAGCTTATCAAGCTGCATACCCTTGTAAGGGTAGATCCTTATAAAATCAGATGGGATGCAATTAATCTCGAACACCCTGCAACATTTGAAACTTTAGCCATGGATCTGGAGCTGAAGACATCTGTTTTGGAGGATTTGGAAAAGTTTGTTAAGAGGAAAGAGTTTTATCAAAGAGTGGGAAGGGCTTGGAAGCGAGGGTATCTTTTATATGGTCCTCCAGGCACTGGTAAATCGTCACTTGTAGCTGCCATGGCTAATTACCTCAAGTTTGATATCTATGACTTGCAGCTCACACATTTGAAATCAGACATGGAATTGAGAAAAGCACTGATTGCAACAACAAATAAATCTATACTTGTGATTGAGGATATCGATTGTAGTCAGGCGGAGCTGCAAGATCGAAACTCTGGTAAGGGAAGTAGGAAAAATGAGTCAGAAGGCCAGCAGATTACGCTGTCTGGACTACTAAACTTCACAGATGGCCTGTGGTCTAGTTGTGGAGAAGAAAGAATCTTCATATTCACTACCAATCACAAGAGCAAACTAGACCCTGCATTGCTGCGATCAGGACGAATGGACATGCACATCCACATGTCGTATTGCTCGTATGAGGGCTTCAAAACATTGGCCTCAAATTACCTGGGAGTCTGTGACCATCCCTTGTTTGAGAATATCGAAAGCCTACTGAAGAATACAAAGATCACTCCTGCCCAAATTGCTGAGGCGCTAATGAAGAGTGAGGATGCTGAAGTTGCACTCCAGGGTCTGATCACGGTGCTAAAGGAAAAGAGATACAAGGGGGATGAGTACCTAGATGAAGGTGAAGGGGAGCACTTGACATATTTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

447

Amino Acids

51.47

Weight (kDa)

6.66

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 33 - 111 7.7e-16 Domain associated at C-terminal with AAA
AAA PF00004 230 - 362 2.2e-20 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 364 - 427 2.6e-24 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
Acc16I TGCGCA 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 31
AccB7I CCANNNNNTGG 1 cut(s) 713
AciI CCGC 1 cut(s) 875
AclI AACGTT 1 cut(s) 106
AclWI GGATC 3 cut(s) 113, 518, 600
AcsI RAATTY 2 cut(s) 290, 436
AcuI CTGAAG 3 cut(s) 623, 1196, 1257
AfaI GTAC 1 cut(s) 1298
AfiI CCNNNNNNNGG 4 cut(s) 370, 516, 517, 713
AflIII ACRYGT 1 cut(s) 1080
AgsI TTSAA 4 cut(s) 334, 578, 790, 1108
AjnI CCWGG 4 cut(s) 91, 706, 1128, 1248
AluBI AGCT 9 cut(s) 190, 319, 400, 493, 502, 601, 734, 778, 880
AluI AGCT 9 cut(s) 190, 319, 400, 493, 502, 601, 734, 778, 880
Alw21I GWGCWC 1 cut(s) 1323
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 3 cut(s) 113, 518, 600
AlwNI CAGNNNCTG 2 cut(s) 713, 1255
AoxI GGCC 4 cut(s) 471, 928, 970, 1116
ApeKI GCWGC 5 cut(s) 502, 734, 775, 880, 1048
ApoI RAATTY 2 cut(s) 290, 436
ArsI GACNNNNNNTTYG 2 cut(s) 598, 630
AseI ATTAAT 1 cut(s) 552
Asp700I GAANNNNTTC 1 cut(s) 312
AspLEI GCGC 3 cut(s) 56, 241, 1216
AspS9I GGNCC 1 cut(s) 701
AsuHPI GGTGA 2 cut(s) 350, 1322
AvaII GGWCC 1 cut(s) 701
BarI GAAGNNNNNNTAC 2 cut(s) 1088, 1120
BbsI GAAGAC 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 1323
BbvCI CCTCAGC 1 cut(s) 1209
BbvI GCAGC 5 cut(s) 489, 721, 787, 867, 1035
BccI CCATC 3 cut(s) 534, 962, 1152
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 4 cut(s) 93, 708, 1130, 1250
BclI TGATCA 1 cut(s) 1257
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 5 cut(s) 222, 981, 1034, 1301, 1339
BfoI RGCGCY 1 cut(s) 1217
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 5 cut(s) 503, 735, 776, 881, 1049
BlsI GCNGC 5 cut(s) 504, 736, 777, 882, 1050
Bme1390I CCNGG 4 cut(s) 93, 708, 1130, 1250
Bme18I GGWCC 1 cut(s) 701
BmgT120I GGNCC 1 cut(s) 701
BmrFI CCNGG 4 cut(s) 93, 708, 1130, 1250
BmsI GCATC 3 cut(s) 383, 535, 1222
BpiI GAAGAC 1 cut(s) 611
BpmI CTGGAG 3 cut(s) 617, 690, 1232
Bpu10I CCTNAGC 1 cut(s) 1209
BpuEI CTTGAG 2 cut(s) 305, 737
Bsa29I ATCGAT 1 cut(s) 861
BsaJI CCNNGG 6 cut(s) 91, 148, 588, 738, 1129, 1249
Bsc4I CCNNNNNNNGG 4 cut(s) 370, 516, 517, 713
Bse1I ACTGG 1 cut(s) 718
Bse3DI GCAATG 1 cut(s) 1043
BseBI CCWGG 4 cut(s) 93, 708, 1130, 1250
BseCI ATCGAT 1 cut(s) 861
BseDI CCNNGG 6 cut(s) 91, 148, 588, 738, 1129, 1249
BseGI GGATG 7 cut(s) 304, 374, 550, 1074, 1144, 1237, 1297
BseLI CCNNNNNNNGG 4 cut(s) 370, 516, 517, 713
BseMI GCAATG 1 cut(s) 1043
BseMII CTCAG 1 cut(s) 1200
BseNI ACTGG 1 cut(s) 718
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 5 cut(s) 489, 721, 787, 867, 1035
BshFI GGCC 4 cut(s) 473, 930, 972, 1118
BshVI ATCGAT 1 cut(s) 861
BsiHKAI GWGCWC 1 cut(s) 1323
BslI CCNNNNNNNGG 4 cut(s) 370, 516, 517, 713
BsmAI GTCTC 1 cut(s) 455
BsnI GGCC 4 cut(s) 473, 930, 972, 1118
Bsp1286I GDGCHC 1 cut(s) 1323
Bsp143I GATC 8 cut(s) 118, 207, 523, 592, 886, 1052, 1188, 1257
Bsp19I CCATGG 3 cut(s) 148, 588, 738
BspACI CCGC 1 cut(s) 875
BspANI GGCC 4 cut(s) 473, 930, 972, 1118
BspCNI CTCAG 1 cut(s) 1201
BspDI ATCGAT 1 cut(s) 861
BspHI TCATGA 1 cut(s) 432
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 3 cut(s) 113, 518, 600
BsrDI GCAATG 1 cut(s) 1043
BsrI ACTGG 1 cut(s) 718
BssECI CCNNGG 6 cut(s) 91, 148, 588, 738, 1129, 1249
BssMI GATC 8 cut(s) 118, 207, 523, 592, 886, 1052, 1188, 1257
BssT1I CCWWGG 3 cut(s) 148, 588, 738
Bst2UI CCWGG 4 cut(s) 93, 708, 1130, 1250
Bst4CI ACNGT 1 cut(s) 1264
Bst6I CTCTTC 1 cut(s) 1217
BstAPI GCANNNNNTGC 1 cut(s) 821
BstC8I GCNNGC 1 cut(s) 932
BstDEI CTNAG 1 cut(s) 1209
BstDSI CCRYGG 3 cut(s) 148, 588, 738
BstF5I GGATG 7 cut(s) 304, 374, 550, 1074, 1144, 1237, 1297
BstH2I RGCGCY 1 cut(s) 1217
BstHHI GCGC 3 cut(s) 56, 241, 1216
BstKTI GATC 8 cut(s) 121, 210, 526, 595, 889, 1055, 1191, 1260
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 8 cut(s) 118, 207, 523, 592, 886, 1052, 1188, 1257
BstMWI GCNNNNNNNGC 7 cut(s) 196, 499, 740, 821, 940, 1205, 1241
BstNI CCWGG 4 cut(s) 93, 708, 1130, 1250
BstNSI RCATGY 2 cut(s) 1072, 1084
BstSCI CCNGG 4 cut(s) 91, 706, 1128, 1248
BstV1I GCAGC 5 cut(s) 489, 721, 787, 867, 1035
BstV2I GAAGAC 1 cut(s) 611
BstX2I RGATCY 2 cut(s) 523, 592
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 2 cut(s) 523, 592
Bsu15I ATCGAT 1 cut(s) 861
BsuRI GGCC 4 cut(s) 473, 930, 972, 1118
BsuTUI ATCGAT 1 cut(s) 861
BtgI CCRYGG 3 cut(s) 148, 588, 738
BtsCI GGATG 7 cut(s) 304, 374, 550, 1074, 1144, 1237, 1297
BtsIMutI CAGTG 2 cut(s) 711, 815
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 932
CaiI CAGNNNCTG 2 cut(s) 713, 1255
CciI TCATGA 1 cut(s) 432
CfoI GCGC 3 cut(s) 56, 241, 1216
Cfr13I GGNCC 1 cut(s) 701
ClaI ATCGAT 1 cut(s) 861
Csp6I GTAC 1 cut(s) 1297
CviAII CATG 8 cut(s) 149, 433, 475, 589, 739, 799, 1069, 1081
CviQI GTAC 1 cut(s) 1297
DdeI CTNAG 1 cut(s) 1209
DpnI GATC 8 cut(s) 120, 209, 525, 594, 888, 1054, 1190, 1259
DpnII GATC 8 cut(s) 118, 207, 523, 592, 886, 1052, 1188, 1257
Eam1104I CTCTTC 1 cut(s) 1217
EarI CTCTTC 1 cut(s) 1217
EciI GGCGGA 1 cut(s) 890
Eco130I CCWWGG 3 cut(s) 148, 588, 738
Eco32I GATATC 3 cut(s) 33, 763, 859
Eco47I GGWCC 1 cut(s) 701
Eco57I CTGAAG 3 cut(s) 623, 1196, 1257
EcoRI GAATTC 1 cut(s) 436
EcoRII CCWGG 4 cut(s) 91, 706, 1128, 1248
EcoRV GATATC 3 cut(s) 33, 763, 859
EcoT14I CCWWGG 3 cut(s) 148, 588, 738
ErhI CCWWGG 3 cut(s) 148, 588, 738
FaeI CATG 8 cut(s) 152, 436, 478, 592, 742, 802, 1072, 1084
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FatI CATG 8 cut(s) 148, 432, 474, 588, 738, 798, 1068, 1080
FbaI TGATCA 1 cut(s) 1257
Fnu4HI GCNGC 5 cut(s) 503, 735, 776, 881, 1049
FokI GGATG 7 cut(s) 311, 361, 557, 1061, 1131, 1244, 1304
Fsp4HI GCNGC 5 cut(s) 503, 735, 776, 881, 1049
FspBI CTAG 5 cut(s) 222, 981, 1034, 1301, 1339
FspI TGCGCA 1 cut(s) 240
GlaI GCGC 3 cut(s) 55, 240, 1215
GluI GCNGC 5 cut(s) 503, 735, 776, 881, 1049
GsuI CTGGAG 3 cut(s) 617, 690, 1232
HaeII RGCGCY 1 cut(s) 1217
HaeIII GGCC 4 cut(s) 473, 930, 972, 1118
HhaI GCGC 3 cut(s) 56, 241, 1216
Hin1II CATG 8 cut(s) 152, 436, 478, 592, 742, 802, 1072, 1084
Hin6I GCGC 3 cut(s) 54, 239, 1214
HinP1I GCGC 3 cut(s) 54, 239, 1214
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 7 cut(s) 5, 153, 225, 350, 920, 999, 1134
HphI GGTGA 2 cut(s) 350, 1322
Hpy188I TCNGA 8 cut(s) 12, 118, 249, 280, 539, 796, 925, 1257
Hpy188III TCNNGA 5 cut(s) 433, 557, 596, 948, 1056
HpyAV CCTTC 6 cut(s) 375, 472, 663, 920, 1301, 1307
HpyCH4III ACNGT 1 cut(s) 1264
HpyCH4IV ACGT 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 7 cut(s) 196, 499, 740, 821, 940, 1205, 1241
HpyF3I CTNAG 1 cut(s) 1209
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 8 cut(s) 152, 436, 478, 592, 742, 802, 1072, 1084
HspAI GCGC 3 cut(s) 54, 239, 1214
Ksp22I TGATCA 1 cut(s) 1257
Kzo9I GATC 8 cut(s) 118, 207, 523, 592, 886, 1052, 1188, 1257
LmnI GCTCC 4 cut(s) 187, 598, 877, 1318
Lsp1109I GCAGC 5 cut(s) 489, 721, 787, 867, 1035
LweI GCATC 3 cut(s) 383, 535, 1222
MaeI CTAG 5 cut(s) 222, 981, 1034, 1301, 1339
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 2 cut(s) 723, 1139
MalI GATC 8 cut(s) 120, 209, 525, 594, 888, 1054, 1190, 1259
MboI GATC 8 cut(s) 118, 207, 523, 592, 886, 1052, 1188, 1257
MboII GAAGA 7 cut(s) 79, 320, 616, 994, 1004, 1189, 1234
MflI RGATCY 2 cut(s) 523, 592
MhlI GDGCHC 1 cut(s) 1323
MluCI AATT 9 cut(s) 135, 234, 290, 436, 549, 745, 803, 1123, 1203
MlyI GAGTC 4 cut(s) 219, 359, 929, 1143
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 4 cut(s) 101, 468, 552, 639
MslI CAYNNNNRTG 1 cut(s) 1079
MspR9I CCNGG 4 cut(s) 93, 708, 1130, 1250
MvaI CCWGG 4 cut(s) 93, 708, 1130, 1250
MwoI GCNNNNNNNGC 7 cut(s) 196, 499, 740, 821, 940, 1205, 1241
NcoI CCATGG 3 cut(s) 148, 588, 738
NdeII GATC 8 cut(s) 118, 207, 523, 592, 886, 1052, 1188, 1257
NlaIII CATG 8 cut(s) 152, 436, 478, 592, 742, 802, 1072, 1084
NmuCI GTSAC 2 cut(s) 723, 1139
NsbI TGCGCA 1 cut(s) 240
NspI RCATGY 2 cut(s) 1072, 1084
PagI TCATGA 1 cut(s) 432
PciI ACATGT 1 cut(s) 1080
PcsI WCGNNNNNNNCGW 1 cut(s) 1091
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 3 cut(s) 5, 153, 999
PflMI CCANNNNNTGG 1 cut(s) 713
PkrI GCNGC 5 cut(s) 504, 736, 777, 882, 1050
PleI GAGTC 4 cut(s) 219, 358, 928, 1142
PpsI GAGTC 4 cut(s) 219, 358, 928, 1142
PscI ACATGT 1 cut(s) 1080
PshBI ATTAAT 1 cut(s) 552
PsiI TTATAA 1 cut(s) 531
Psp1406I AACGTT 1 cut(s) 106
Psp6I CCWGG 4 cut(s) 91, 706, 1128, 1248
PspGI CCWGG 4 cut(s) 91, 706, 1128, 1248
PspPI GGNCC 1 cut(s) 701
PstNI CAGNNNCTG 2 cut(s) 713, 1255
PsuI RGATCY 2 cut(s) 523, 592
RsaI GTAC 1 cut(s) 1298
RsaNI GTAC 1 cut(s) 1297
RseI CAYNNNNRTG 1 cut(s) 1079
SaqAI TTAA 4 cut(s) 101, 468, 552, 639
SatI GCNGC 5 cut(s) 503, 735, 776, 881, 1049
Sau3AI GATC 8 cut(s) 118, 207, 523, 592, 886, 1052, 1188, 1257
Sau96I GGNCC 1 cut(s) 701
SchI GAGTC 4 cut(s) 219, 359, 929, 1143
ScrFI CCNGG 4 cut(s) 93, 708, 1130, 1250
SduI GDGCHC 1 cut(s) 1323
SfaNI GCATC 3 cut(s) 383, 535, 1222
SinI GGWCC 1 cut(s) 701
SmiMI CAYNNNNRTG 1 cut(s) 1079
SmlI CTYRAG 2 cut(s) 320, 752
SmoI CTYRAG 2 cut(s) 320, 752
Sse9I AATT 9 cut(s) 135, 234, 290, 436, 549, 745, 803, 1123, 1203
SsiI CCGC 1 cut(s) 875
SspMI CTAG 5 cut(s) 222, 981, 1034, 1301, 1339
StyD4I CCNGG 4 cut(s) 91, 706, 1128, 1248
StyI CCWWGG 3 cut(s) 148, 588, 738
TaaI ACNGT 1 cut(s) 1264
TaiI ACGT 1 cut(s) 109
TaqI TCGA 6 cut(s) 163, 408, 558, 861, 889, 1164
TasI AATT 9 cut(s) 135, 234, 290, 436, 549, 745, 803, 1123, 1203
TfiI GAWTC 3 cut(s) 5, 153, 999
Tru1I TTAA 4 cut(s) 101, 468, 552, 639
Tru9I TTAA 4 cut(s) 101, 468, 552, 639
TscAI CASTG 2 cut(s) 718, 822
TseFI GTSAC 2 cut(s) 723, 1139
TseI GCWGC 5 cut(s) 502, 734, 775, 880, 1048
Tsp45I GTSAC 2 cut(s) 723, 1139
TspDTI ATGAA 8 cut(s) 156, 321, 449, 491, 994, 1235, 1320, 1324
TspRI CASTG 2 cut(s) 718, 822
Van91I CCANNNNNTGG 1 cut(s) 713
VpaK11BI GGWCC 1 cut(s) 701
VspI ATTAAT 1 cut(s) 552
XapI RAATTY 2 cut(s) 290, 436
XceI RCATGY 2 cut(s) 1072, 1084
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 5 cut(s) 222, 981, 1034, 1301, 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.