Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006921

Physical Location & Seq

Genomic Coordinates Reverse (-)

15178668 .. 15179702

Gene Structure 1035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG148100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATTCTCTGAAAAGTATACCTGCTTTGATATCAAAATGGCTATCAGCTTGCGTCTCTATGGTTGTTTCCTTGTTGCTTCTGGCCTTCCCTGGCTTCCTTAAACGTTGGTTATCTGATCCCATGACATTACAAATTGAAGAATACCATGGTATGAGTAGTCGTAATCAACTTTTCGGTGCTTTGGAGCTTTACTTGCAGAACAAGATCAGCCCCTCCACTCGACTTCTCAAAATTGCACAAACTCGGAAAGATGGTATTTTCAGCACCCACTTTTCAGACAGGCAAGAGTTTGAGGATGTGTATGAAGATATTCAGCTCAAGTGGAAGTTCAATATCATATCTAAGGAGTCCAATCATCCTTCTTTAGCATCCAAGAGAAAGCAATACTTTGAGCTTATATTTGACTTAGAACACCAGGAAAAGGTCATGAATTCTTACTTGCCTTATGTTTTGGAGAGATTTAAGGCCATGAGGGAGGAAAGAAAGCTTGTCAAGCTGCATACCCTTGCAAGGTTAGATCCTTTTAAAATCAAATGGGATGCAATCAATCTCGAACACCCTGCAACGTTTGAAACTTTAGCCATGGATTTGGAGCTGAAGACAGCTGTTTTGGAGGATTTAGAAAAGTTTGTTAAGAGGAAAGAGTTCTATCAAAAAGTGGGAAGGGCTTGGAAGCGAGGGTATCTTTTATATGGTCCTCCAGGCACTGGTAAATCGTCGCTTGTAGCTGCCATAGCTAATTACCTCAAGTTTGATATCTATGATTTGCAGCTCACACATTTGAAATCAGATATGGAATTGAGAAAAGCATTGATTGCAACAACAAATAAATCTATACTTGTGATTGAGGATATTGATTGTAGTCAGGCGGAGCTACAAGATCGAAACTATGGTAAGGGCAGTAAGAAAAATGAGTCTGAAGGCCAGCAGGTTAGCATTTCTACACGTACAAAAACTGTTAGTGATTTGGCATTTGAGGTGTTTATAAAATGGCTAGTAACTGATGTTAGAGAAGGTTTAGGCAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

344

Amino Acids

39.84

Weight (kDa)

8.88

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	33 - 111	4.6e-15	Domain associated at C-terminal with AAA
AAA	PF00004	229 - 292	1.9e-10	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006921)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12400 FvH4_3g12400 FvH4_3g12400 FvH4_3g12400 FvH4_3g12402
malus_domestica	MD05G1250600.v1.1
prunus_persica	Prupe.4G113000_v2.0.a1
pyrus_communis	pycom05g22850
rosa_chinensis	RchiOBHm_Chr5g0020271 RchiOBHm_Chr5g0020291
rosa_laevigata	RLG00000032514 RLG00000032515
rosa_multiflora	Rmu_sc0002087.1_g000006 Rmu_sc0002087.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057930 Rroxscaffold_1G00057940
rosa_rugosa	Rorug05G0058100 Rorug05G0058200 Rorug05G0058300
rosa_samantha	Rh5AG148600 Rh5AG148700 Rh5BG148100 Rh5CG159500 Rh5CG159800
rosa_wichuraiana	Rw5G013150 Rw5G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	989
Acc36I	ACCTGC	2 cut(s)	31, 922
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	1 cut(s)	872
AclI	AACGTT	2 cut(s)	106, 569
AclWI	GGATC	2 cut(s)	113, 515
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	620, 942
AfaI	GTAC	1 cut(s)	952
AfiI	CCNNNNNNNGG	3 cut(s)	424, 513, 710
AflIII	ACRYGT	1 cut(s)	947
AgsI	TTSAA	4 cut(s)	140, 334, 575, 787
AjnI	CCWGG	3 cut(s)	91, 417, 703
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	113, 515
AlwNI	CAGNNNCTG	1 cut(s)	710
AoxI	GGCC	3 cut(s)	84, 468, 925
ApeKI	GCWGC	3 cut(s)	499, 731, 772
ApoI	RAATTY	1 cut(s)	433
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	2 cut(s)	312, 647
AspS9I	GGNCC	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	608
BbvI	GCAGC	3 cut(s)	486, 718, 784
BccI	CCATC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	3 cut(s)	93, 419, 705
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	998, 1033
BfuAI	ACCTGC	2 cut(s)	31, 922
BisI	GCNGC	3 cut(s)	500, 732, 773
BlsI	GCNGC	3 cut(s)	501, 733, 774
Bme1390I	CCNGG	3 cut(s)	93, 419, 705
Bme18I	GGWCC	1 cut(s)	698
BmgT120I	GGNCC	1 cut(s)	698
BmrFI	CCNGG	3 cut(s)	93, 419, 705
BmsI	GCATC	2 cut(s)	380, 532
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	687
BpuEI	CTTGAG	2 cut(s)	305, 734
BsaAI	YACGTR	1 cut(s)	950
BsaJI	CCNNGG	3 cut(s)	91, 148, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 513, 710
Bse1I	ACTGG	1 cut(s)	715
BseBI	CCWGG	3 cut(s)	93, 419, 705
BseDI	CCNNGG	3 cut(s)	91, 148, 585
BseGI	GGATG	4 cut(s)	304, 358, 371, 547
BseLI	CCNNNNNNNGG	3 cut(s)	424, 513, 710
BseNI	ACTGG	1 cut(s)	715
BseXI	GCAGC	3 cut(s)	486, 718, 784
BshFI	GGCC	3 cut(s)	86, 470, 927
BslI	CCNNNNNNNGG	3 cut(s)	424, 513, 710
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	3 cut(s)	86, 470, 927
Bsp143I	GATC	4 cut(s)	118, 207, 520, 883
Bsp19I	CCATGG	2 cut(s)	148, 585
BspACI	CCGC	1 cut(s)	872
BspANI	GGCC	3 cut(s)	86, 470, 927
BspHI	TCATGA	1 cut(s)	429
BspMI	ACCTGC	2 cut(s)	31, 922
BspPI	GGATC	2 cut(s)	113, 515
BsrI	ACTGG	1 cut(s)	715
BssECI	CCNNGG	3 cut(s)	91, 148, 585
BssMI	GATC	4 cut(s)	118, 207, 520, 883
BssNAI	GTATAC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	148, 585
Bst1107I	GTATAC	1 cut(s)	20
Bst2UI	CCWGG	3 cut(s)	93, 419, 705
Bst4CI	ACNGT	1 cut(s)	961
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstBAI	YACGTR	1 cut(s)	950
BstC8I	GCNNGC	2 cut(s)	52, 929
BstDEI	CTNAG	2 cut(s)	345, 409
BstDSI	CCRYGG	2 cut(s)	148, 585
BstF5I	GGATG	4 cut(s)	304, 358, 371, 547
BstKTI	GATC	4 cut(s)	121, 210, 523, 886
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	4 cut(s)	118, 207, 520, 883
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 496, 737, 818
BstNI	CCWGG	3 cut(s)	93, 419, 705
BstSCI	CCNGG	3 cut(s)	91, 417, 703
BstV1I	GCAGC	3 cut(s)	486, 718, 784
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	520
BstZ17I	GTATAC	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	86, 470, 927
BtgI	CCRYGG	2 cut(s)	148, 585
BtsCI	GGATG	4 cut(s)	304, 358, 371, 547
BtsIMutI	CAGTG	1 cut(s)	708
BveI	ACCTGC	2 cut(s)	31, 922
Cac8I	GCNNGC	2 cut(s)	52, 929
CaiI	CAGNNNCTG	1 cut(s)	710
CciI	TCATGA	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	698
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	951
CviAII	CATG	5 cut(s)	124, 149, 430, 472, 586
CviQI	GTAC	1 cut(s)	951
DdeI	CTNAG	2 cut(s)	345, 409
DpnI	GATC	4 cut(s)	120, 209, 522, 885
DpnII	GATC	4 cut(s)	118, 207, 520, 883
DraI	TTTAAA	1 cut(s)	529
EciI	GGCGGA	1 cut(s)	887
Eco130I	CCWWGG	2 cut(s)	148, 585
Eco32I	GATATC	2 cut(s)	33, 760
Eco47I	GGWCC	1 cut(s)	698
Eco57I	CTGAAG	2 cut(s)	620, 942
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	3 cut(s)	91, 417, 703
EcoRV	GATATC	2 cut(s)	33, 760
EcoT14I	CCWWGG	2 cut(s)	148, 585
ErhI	CCWWGG	2 cut(s)	148, 585
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	5 cut(s)	127, 152, 433, 475, 589
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	5 cut(s)	123, 148, 429, 471, 585
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	3 cut(s)	500, 732, 773
FokI	GGATG	4 cut(s)	311, 345, 358, 554
Fsp4HI	GCNGC	3 cut(s)	500, 732, 773
FspBI	CTAG	2 cut(s)	998, 1033
GluI	GCNGC	3 cut(s)	500, 732, 773
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	3 cut(s)	86, 470, 927
HgaI	GACGC	1 cut(s)	43
Hin1II	CATG	5 cut(s)	127, 152, 433, 475, 589
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	3 cut(s)	5, 350, 917
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	6 cut(s)	12, 118, 249, 280, 793, 922
Hpy188III	TCNNGA	2 cut(s)	430, 554
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	1 cut(s)	724
HpyAV	CCTTC	5 cut(s)	97, 372, 660, 917, 1010
HpyCH4III	ACNGT	1 cut(s)	961
HpyCH4IV	ACGT	3 cut(s)	106, 569, 949
HpyCH4V	TGCA	8 cut(s)	199, 239, 502, 512, 545, 566, 772, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 496, 737, 818
HpyF3I	CTNAG	2 cut(s)	345, 409
HpySE526I	ACGT	3 cut(s)	106, 569, 949
Hsp92II	CATG	5 cut(s)	127, 152, 433, 475, 589
Kzo9I	GATC	4 cut(s)	118, 207, 520, 883
LmnI	GCTCC	3 cut(s)	187, 595, 874
Lsp1109I	GCAGC	3 cut(s)	486, 718, 784
LweI	GCATC	2 cut(s)	380, 532
MaeI	CTAG	2 cut(s)	998, 1033
MaeII	ACGT	3 cut(s)	106, 569, 949
MaeIII	GTNAC	1 cut(s)	1000
MalI	GATC	4 cut(s)	120, 209, 522, 885
MboI	GATC	4 cut(s)	118, 207, 520, 883
MboII	GAAGA	3 cut(s)	152, 320, 613
MflI	RGATCY	1 cut(s)	520
MluCI	AATT	6 cut(s)	135, 234, 433, 742, 800, 1027
MlyI	GAGTC	2 cut(s)	359, 926
MroXI	GAANNNNTTC	2 cut(s)	312, 647
MseI	TTAA	4 cut(s)	102, 465, 528, 636
MspA1I	CMGCKG	1 cut(s)	608
MspR9I	CCNGG	3 cut(s)	93, 419, 705
MvaI	CCWGG	3 cut(s)	93, 419, 705
MwoI	GCNNNNNNNGC	4 cut(s)	196, 496, 737, 818
NcoI	CCATGG	2 cut(s)	148, 585
NdeII	GATC	4 cut(s)	118, 207, 520, 883
NlaIII	CATG	5 cut(s)	127, 152, 433, 475, 589
PagI	TCATGA	1 cut(s)	429
PdmI	GAANNNNTTC	2 cut(s)	312, 647
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	3 cut(s)	501, 733, 774
PleI	GAGTC	2 cut(s)	358, 925
PpsI	GAGTC	2 cut(s)	358, 925
Ppu21I	YACGTR	1 cut(s)	950
PsiI	TTATAA	1 cut(s)	989
Psp1406I	AACGTT	2 cut(s)	106, 569
Psp6I	CCWGG	3 cut(s)	91, 417, 703
PspGI	CCWGG	3 cut(s)	91, 417, 703
PspPI	GGNCC	1 cut(s)	698
PstNI	CAGNNNCTG	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	952
RsaNI	GTAC	1 cut(s)	951
SaqAI	TTAA	4 cut(s)	102, 465, 528, 636
SatI	GCNGC	3 cut(s)	500, 732, 773
Sau3AI	GATC	4 cut(s)	118, 207, 520, 883
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	2 cut(s)	359, 926
ScrFI	CCNGG	3 cut(s)	93, 419, 705
SfaNI	GCATC	2 cut(s)	380, 532
SinI	GGWCC	1 cut(s)	698
SmlI	CTYRAG	2 cut(s)	320, 749
SmoI	CTYRAG	2 cut(s)	320, 749
Sse9I	AATT	6 cut(s)	135, 234, 433, 742, 800, 1027
SsiI	CCGC	1 cut(s)	872
SspMI	CTAG	2 cut(s)	998, 1033
StyD4I	CCNGG	3 cut(s)	91, 417, 703
StyI	CCWWGG	2 cut(s)	148, 585
TaaI	ACNGT	1 cut(s)	961
TaiI	ACGT	3 cut(s)	109, 572, 952
TaqI	TCGA	3 cut(s)	223, 555, 886
TasI	AATT	6 cut(s)	135, 234, 433, 742, 800, 1027
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	4 cut(s)	102, 465, 528, 636
Tru9I	TTAA	4 cut(s)	102, 465, 528, 636
TscAI	CASTG	1 cut(s)	715
TseI	GCWGC	3 cut(s)	499, 731, 772
TspDTI	ATGAA	2 cut(s)	321, 446
TspRI	CASTG	1 cut(s)	715
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	698
XapI	RAATTY	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	19
XmnI	GAANNNNTTC	2 cut(s)	312, 647
XspI	CTAG	2 cut(s)	998, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.