Rroxscaffold_1G00057930

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006921
Physical Location & Seq
Forward (+)
79893700 .. 79895188
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057930.1

Sequence Viewer

Length: 1263 bp
ATGCAGTACTTAATCCAACCCATTATGAGACTTCTTCATCCAATCACCCATGCTTTCTCCAAAAGCCGATCATCAGCTGATGAGCTCATGATCATGCAAATTGAAGAATACCATGGCATGAGTACTTATAATAAAGTGTTCGAAGCTTCAGAGCTTTACCTGCACAACAAGATAAGCCCTTCCACTAGACTCCTCAAAATTGTACAAACTCAGAAAGAGACTAAGTTTGCCATCCATTTCTCAAACAACCAAGAGTTTGAAGACATTTATGAAGGAGTCCAGCTGAAATGGAAATACAATTCCATATCCAAGAAAAGACATTCAAGGGCTATGAAAGATGCAGGAAAGATTGTCAAGCTGCATACACTTGTAAGGTCAGAGGATTACAAAGTAAGATGGAGTGCAATCAATCTCAAACACCCTGCAACATTCGAGACCATAGCCATGGATTCTGAGCAGAAGAGATCGGTTTTGGAGGATTTGGACATGTTTGTTAAGAGGAAAGAGTTCTATCAAAGAGTAGGAAGGGCTTGGAAAAGGGGGTATCTACTTTATGGTCCTCCAGGGACTGGTAAATCATCCCTTATAGCTGCTATTGCTAATTATCTGAAGTTTGATATTTATGACTTGCAACTCATGCAATTGGTATCGGATATGGAATTAAGAAGAGTGTTGCTGGCAACAACTAAATCCATAATCGTGATTGAGGATATAGATTGTAGTCAATTGAAGCTGCAAGATAGAAAGAACAGCAGTAAGAAAAATGACTCGGAAAGCAATCAGGCTATCGATCATTCTTCTCCAATATTAAAAAGTCTTTCGCTATTGGGACGACTACTGAACTTCACAGATGGCCTGTGGTATAGTTGTGGAGAAAAGAGAATCATTATACTCACTACCAGTCACAAGAGCAAACTAGACCCTGCATTGCTGCGTTCAGGACGAATGGACATGCACGTCCACATGTCGTATTGCTCATATGAGGGCTTCAAAACATTGGCCTCAAATTACCTAGGCATCAAGGAACACCAACCTTTGTTTGATGAGATTGAAAGCCTACTGCAGAAGACAGAGGTCACTCCTGCACAAGTCGCCGAAGAGCTGATGAAGAGTGAGGATGCTGATGTTGCACTCCAAGCTTTGATCACGGGGATAAAGGAAATGAATAAAAGGAAGGAAGATGAAAAAAAGGCCAAAGATGAAGAGAAAGTTAAGAACGATAAAGAGAAGGTTGATCATAAACAGTTGACATATTTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

420

Amino Acids

48.66

Weight (kDa)

8.99

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 15 - 99 3.4e-15 Domain associated at C-terminal with AAA
AAA PF00004 182 - 323 2.8e-17 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 325 - 397 1.7e-25 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AasI GACNNNNNNGTC 1 cut(s) 956
Acc36I ACCTGC 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 569
AcuI CTGAAG 2 cut(s) 132, 629
AfaI GTAC 3 cut(s) 8, 124, 204
AfiI CCNNNNNNNGG 1 cut(s) 569
AflIII ACRYGT 2 cut(s) 486, 963
AgsI TTSAA 6 cut(s) 104, 260, 324, 730, 991, 1052
AjiI CACGTC 1 cut(s) 958
AjnI CCWGG 1 cut(s) 562
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 3 cut(s) 22, 212, 428
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 3 cut(s) 853, 999, 1191
ApeKI GCWGC 4 cut(s) 358, 590, 733, 931
Asp700I GAANNNNTTC 1 cut(s) 506
AspA2I CCTAGG 1 cut(s) 1012
AspS9I GGNCC 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 37
AsuII TTCGAA 1 cut(s) 141
AvaII GGWCC 1 cut(s) 557
AvrII CCTAGG 1 cut(s) 1012
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 2 cut(s) 267, 1073
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 345, 577, 720, 918
BccI CCATC 3 cut(s) 239, 390, 845
BciT130I CCWGG 1 cut(s) 564
BclI TGATCA 3 cut(s) 90, 1143, 1234
BcoDI GTCTC 3 cut(s) 22, 212, 428
BfaI CTAG 3 cut(s) 186, 917, 1013
BfmI CTRYAG 1 cut(s) 1061
BfuAI ACCTGC 1 cut(s) 168
BisI GCNGC 4 cut(s) 359, 591, 734, 932
BlnI CCTAGG 1 cut(s) 1012
BlsI GCNGC 4 cut(s) 360, 592, 735, 933
BmcAI AGTACT 2 cut(s) 8, 124
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 1 cut(s) 557
BmgBI CACGTC 1 cut(s) 958
BmgT120I GGNCC 1 cut(s) 557
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 3 cut(s) 328, 1026, 1108
BoxI GACNNNNGTC 1 cut(s) 1073
BpiI GAAGAC 2 cut(s) 267, 1073
BpmI CTGGAG 1 cut(s) 546
Bpu14I TTCGAA 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 789
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 4 cut(s) 112, 444, 563, 1012
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse1I ACTGG 2 cut(s) 574, 900
Bse3DI GCAATG 1 cut(s) 926
BseBI CCWGG 1 cut(s) 564
BseCI ATCGAT 1 cut(s) 789
BseDI CCNNGG 4 cut(s) 112, 444, 563, 1012
BseGI GGATG 4 cut(s) 37, 231, 578, 1123
BseLI CCNNNNNNNGG 1 cut(s) 569
BseMI GCAATG 1 cut(s) 926
BseMII CTCAG 2 cut(s) 224, 444
BseNI ACTGG 2 cut(s) 574, 900
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 4 cut(s) 345, 577, 720, 918
BsgI GTGCAG 2 cut(s) 146, 1068
BshFI GGCC 3 cut(s) 855, 1001, 1193
BshVI ATCGAT 1 cut(s) 789
BsiHKAI GWGCWC 1 cut(s) 87
BslFI GGGAC 2 cut(s) 580, 843
BslI CCNNNNNNNGG 1 cut(s) 569
BsmAI GTCTC 3 cut(s) 22, 212, 428
BsmFI GGGAC 2 cut(s) 580, 843
BsnI GGCC 3 cut(s) 855, 1001, 1193
Bso31I GGTCTC 1 cut(s) 428
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 6 cut(s) 68, 90, 464, 790, 1143, 1234
Bsp19I CCATGG 2 cut(s) 112, 444
BspANI GGCC 3 cut(s) 855, 1001, 1193
BspCNI CTCAG 2 cut(s) 223, 445
BspDI ATCGAT 1 cut(s) 789
BspHI TCATGA 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 1065
BspMI ACCTGC 1 cut(s) 168
BspQI GCTCTTC 1 cut(s) 1092
BspT104I TTCGAA 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 926
BsrGI TGTACA 1 cut(s) 202
BsrI ACTGG 2 cut(s) 574, 900
BssECI CCNNGG 4 cut(s) 112, 444, 563, 1012
BssMI GATC 6 cut(s) 68, 90, 464, 790, 1143, 1234
BssT1I CCWWGG 3 cut(s) 112, 444, 1012
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 1 cut(s) 1245
Bst6I CTCTTC 5 cut(s) 455, 661, 1092, 1103, 1197
BstAPI GCANNNNNTGC 1 cut(s) 637
BstAUI TGTACA 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 3 cut(s) 210, 222, 453
BstDSI CCRYGG 2 cut(s) 112, 444
BstF5I GGATG 4 cut(s) 37, 231, 578, 1123
BstKTI GATC 6 cut(s) 71, 93, 467, 793, 1146, 1237
BstMAI GTCTC 3 cut(s) 22, 212, 428
BstMBI GATC 6 cut(s) 68, 90, 464, 790, 1143, 1234
BstMWI GCNNNNNNNGC 6 cut(s) 160, 596, 637, 1091, 1127, 1136
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 3 cut(s) 490, 955, 967
BstPAI GACNNNNGTC 1 cut(s) 1073
BstSCI CCNGG 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 1061
BstV1I GCAGC 4 cut(s) 345, 577, 720, 918
BstV2I GAAGAC 2 cut(s) 267, 1073
BstXI CCANNNNNNTGG 1 cut(s) 445
Bsu15I ATCGAT 1 cut(s) 789
BsuRI GGCC 3 cut(s) 855, 1001, 1193
BsuTUI ATCGAT 1 cut(s) 789
BtgI CCRYGG 2 cut(s) 112, 444
BtrI CACGTC 1 cut(s) 958
BtsCI GGATG 4 cut(s) 37, 231, 578, 1123
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 678
CaiI CAGNNNCTG 1 cut(s) 569
CciI TCATGA 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 557
ClaI ATCGAT 1 cut(s) 789
Csp6I GTAC 3 cut(s) 7, 123, 203
CviQI GTAC 3 cut(s) 7, 123, 203
DdeI CTNAG 3 cut(s) 210, 222, 453
DpnI GATC 6 cut(s) 70, 92, 466, 792, 1145, 1236
DpnII GATC 6 cut(s) 68, 90, 464, 790, 1143, 1234
DrdI GACNNNNNNGTC 1 cut(s) 956
DseDI GACNNNNNNGTC 1 cut(s) 956
Eam1104I CTCTTC 5 cut(s) 455, 661, 1092, 1103, 1197
EarI CTCTTC 5 cut(s) 455, 661, 1092, 1103, 1197
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 3 cut(s) 112, 444, 1012
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 557
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 2 cut(s) 132, 629
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 3 cut(s) 112, 444, 1012
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 3 cut(s) 112, 444, 1012
FaqI GGGAC 2 cut(s) 580, 843
FauNDI CATATG 1 cut(s) 979
FbaI TGATCA 3 cut(s) 90, 1143, 1234
Fnu4HI GCNGC 4 cut(s) 359, 591, 734, 932
FokI GGATG 4 cut(s) 24, 218, 565, 1130
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 359, 591, 734, 932
FspBI CTAG 3 cut(s) 186, 917, 1013
GluI GCNGC 4 cut(s) 359, 591, 734, 932
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 3 cut(s) 855, 1001, 1193
HincII GTYRAC 1 cut(s) 1248
HindII GTYRAC 1 cut(s) 1248
HindIII AAGCTT 2 cut(s) 144, 1137
HinfI GANTC 5 cut(s) 189, 276, 449, 767, 882
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 961, 1248
Hpy188I TCNGA 7 cut(s) 151, 213, 379, 454, 609, 652, 772
Hpy188III TCNNGA 4 cut(s) 88, 433, 700, 939
Hpy8I GTNNAC 2 cut(s) 961, 1248
HpyAV CCTTC 5 cut(s) 189, 266, 519, 1168, 1222
HpyCH4III ACNGT 1 cut(s) 1245
HpyCH4IV ACGT 1 cut(s) 957
HpyF10VI GCNNNNNNNGC 6 cut(s) 160, 596, 637, 1091, 1127, 1136
HpyF3I CTNAG 3 cut(s) 210, 222, 453
HpySE526I ACGT 1 cut(s) 957
Ksp22I TGATCA 3 cut(s) 90, 1143, 1234
Kzo9I GATC 6 cut(s) 68, 90, 464, 790, 1143, 1234
LguI GCTCTTC 1 cut(s) 1092
Lsp1109I GCAGC 4 cut(s) 345, 577, 720, 918
LweI GCATC 3 cut(s) 328, 1026, 1108
MaeI CTAG 3 cut(s) 186, 917, 1013
MaeII ACGT 1 cut(s) 957
MaeIII GTNAC 2 cut(s) 902, 1075
MalI GATC 6 cut(s) 70, 92, 466, 792, 1145, 1236
MboI GATC 6 cut(s) 68, 90, 464, 790, 1143, 1234
MfeI CAATTG 2 cut(s) 641, 725
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 8 cut(s) 99, 198, 298, 601, 641, 659, 725, 1006
MlyI GAGTC 3 cut(s) 183, 285, 761
MmeI TCCRAC 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 506
MseI TTAA 5 cut(s) 11, 495, 662, 809, 1212
MslI CAYNNNNRTG 3 cut(s) 92, 443, 698
MspA1I CMGCKG 2 cut(s) 77, 283
MspR9I CCNGG 1 cut(s) 564
MunI CAATTG 2 cut(s) 641, 725
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 6 cut(s) 160, 596, 637, 1091, 1127, 1136
NcoI CCATGG 2 cut(s) 112, 444
NdeI CATATG 1 cut(s) 979
NdeII GATC 6 cut(s) 68, 90, 464, 790, 1143, 1234
NmuCI GTSAC 2 cut(s) 902, 1075
NspI RCATGY 3 cut(s) 490, 955, 967
NspV TTCGAA 1 cut(s) 141
PagI TCATGA 1 cut(s) 87
PciI ACATGT 2 cut(s) 486, 963
PciSI GCTCTTC 1 cut(s) 1092
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 2 cut(s) 449, 882
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 4 cut(s) 360, 592, 735, 933
PleI GAGTC 3 cut(s) 183, 284, 761
PpsI GAGTC 3 cut(s) 183, 284, 761
PscI ACATGT 2 cut(s) 486, 963
PshAI GACNNNNGTC 1 cut(s) 1073
PsiI TTATAA 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspPI GGNCC 1 cut(s) 557
PstI CTGCAG 1 cut(s) 1065
PstNI CAGNNNCTG 1 cut(s) 569
PvuII CAGCTG 2 cut(s) 77, 283
RsaI GTAC 3 cut(s) 8, 124, 204
RsaNI GTAC 3 cut(s) 7, 123, 203
RseI CAYNNNNRTG 3 cut(s) 92, 443, 698
SacI GAGCTC 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 1092
SaqAI TTAA 5 cut(s) 11, 495, 662, 809, 1212
SatI GCNGC 4 cut(s) 359, 591, 734, 932
Sau3AI GATC 6 cut(s) 68, 90, 464, 790, 1143, 1234
Sau96I GGNCC 1 cut(s) 557
ScaI AGTACT 2 cut(s) 8, 124
SchI GAGTC 3 cut(s) 183, 285, 761
ScrFI CCNGG 1 cut(s) 564
SduI GDGCHC 1 cut(s) 87
SfaNI GCATC 3 cut(s) 328, 1026, 1108
SfcI CTRYAG 1 cut(s) 1061
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 3 cut(s) 92, 443, 698
Sse9I AATT 8 cut(s) 99, 198, 298, 601, 641, 659, 725, 1006
SspI AATATT 1 cut(s) 807
SspMI CTAG 3 cut(s) 186, 917, 1013
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 3 cut(s) 112, 444, 1012
TaaI ACNGT 1 cut(s) 1245
TaiI ACGT 1 cut(s) 960
TaqI TCGA 3 cut(s) 141, 432, 789
TasI AATT 8 cut(s) 99, 198, 298, 601, 641, 659, 725, 1006
TatI WGTACW 3 cut(s) 6, 122, 202
TfiI GAWTC 2 cut(s) 449, 882
Tru1I TTAA 5 cut(s) 11, 495, 662, 809, 1212
Tru9I TTAA 5 cut(s) 11, 495, 662, 809, 1212
TseFI GTSAC 2 cut(s) 902, 1075
TseI GCWGC 4 cut(s) 358, 590, 733, 931
Tsp45I GTSAC 2 cut(s) 902, 1075
TspDTI ATGAA 7 cut(s) 26, 285, 347, 1121, 1178, 1197, 1215
Van91I CCANNNNNTGG 1 cut(s) 569
VpaK11BI GGWCC 1 cut(s) 557
XceI RCATGY 3 cut(s) 490, 955, 967
XmaJI CCTAGG 1 cut(s) 1012
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 3 cut(s) 186, 917, 1013
ZrmI AGTACT 2 cut(s) 8, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.