RLG00000032515

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006921
Physical Location & Seq
Reverse (-)
16013284 .. 16015930
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032515

Sequence Viewer

Length: 1503 bp
ATGGAGAACACATCCACTTTGGTGGAACACATGCATTCCGATGAAAGCTCACAAAAGAGATCATATATCAATTCTGCGAAGAAAACACCTACTTCATCAACATCAAAAGGGTCATCAGCTTGTGCCTCAAGGGTTGCTTCCTTGTTGCTCGTTCTGTTCAGGACAATGCAGTACTTGATCCAACCCATTATGATACTTCTTCATCCAATCACCCATGCTTTCTCCAAAAACCGATCATCAGCTGATGAGCTCATGATCATGCAAATTGAAGAATACCATGGCATGAGTACTCATAATAAAGTGTTCGAAGCTTCAGAGCTTTACTTGCACAACAAGATAAGCCCTTCCACTAGACTCCTCAAAATTGTACAAACTCAGAAAGAGACTAAGTTTGCCATCCATTTCTCAAACAACCAAGAGTTTGAAGATATTTATGAAGGAGTCCAGCTGAAATGGAAATACAATTCCATATTCAAGAAGTCCAATTATCCTAGCAAAGCAGGGAAAAAGCAGCAATTCTTTGAGCTCAGATTTGATGTCAAACACAAGGAAAAGGTCATGGATGCTTACTTGCCTTATGTCGTAGAGACATTCAAGGCTATGAAAGATGCTGGAAAGATTGTCAAGCTGCATACACTTGTAAGGTCAGAGGATTACAAAGTAAGATGGAGTGCAATCAATCTCGAACACCCTGCAACATTCGAGACCATAGCCATGGATTCTGAGCAGAAGAGATCGGTTTTGGAGGATTTGGACAGGTTTGTTAAGGGGAAACAGTTCTATCAAAGAGTAGGAAGGGCATGGAAAAGGGGGTATCTACTTTATGGTCCTCCAGGGACTGGTAAATCATCCCTTATAGCTGCTATTGCTAATTATCTGAAGTTTGATATTTATGACTTGCAACTCACGCATTTGATATCGGATATGGAATTAAGAAGAGTGTTGCTGGCAACAACAAATAAATCCATACTCGTGATTGAGGATATAGATTGTAGTCAATTGAAGCTGCAATATAGAAAGAACAGCAGTAAGAAAAATGACTCAGAAAGCAATCAGCTTTCGCTATTGGGACGACTACTAAACTTCACAGATGGCCTGTGGTATAGTTGTGGAGAAGAGAGAATCATTATATTCACTACCAGTCACAAGAGCAAACTAGACCCTGTATTGCTGCGTTCAGGACGAATGGACATGCACGTCCACATGTCGTATTGCTCATATGAGGGCTTCAAAGCATTGGCCTCAAATTACCTAGGCATCAAGGAACACCAACCTTTGTTTGATGAGATTGAAAACCTACTGCAGAAGACAGAGGTCACTCCTGCACAAGTCGCCGAAGAGCTGATGAAGAGTGAGGATGCTGATGTTGCACTCCAAGCTTTGATCACGGGGATAAAGGAAATGAATAGAAGGAAGGAAAATGAAAAAAAGGCCAAAGATGAAGAGAAAGTTAAGAACGATAAAGAGAAGGTTGATCATAAACAGTTGACATATTTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

501

Amino Acids

57.78

Weight (kDa)

9.02

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 72 - 154 2.4e-15 Domain associated at C-terminal with AAA
AAA PF00004 272 - 403 8.6e-18 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 405 - 477 8.2e-25 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1196
AccB7I CCANNNNNTGG 1 cut(s) 839
AclWI GGATC 1 cut(s) 172
AcuI CTGAAG 2 cut(s) 297, 899
AfaI GTAC 3 cut(s) 173, 289, 369
AfiI CCNNNNNNNGG 1 cut(s) 839
AflIII ACRYGT 1 cut(s) 1203
AgsI TTSAA 7 cut(s) 269, 425, 475, 595, 1003, 1231, 1292
AjiI CACGTC 1 cut(s) 1198
AjnI CCWGG 1 cut(s) 832
AleI CACNNNNGTG 1 cut(s) 20
Alw21I GWGCWC 2 cut(s) 252, 528
Alw26I GTCTC 3 cut(s) 377, 581, 698
AlwI GGATC 1 cut(s) 172
AlwNI CAGNNNCTG 1 cut(s) 839
AoxI GGCC 3 cut(s) 1093, 1239, 1431
ApeKI GCWGC 5 cut(s) 511, 628, 860, 1006, 1171
Asp700I GAANNNNTTC 1 cut(s) 776
AspA2I CCTAGG 1 cut(s) 1252
AspS9I GGNCC 1 cut(s) 827
AsuHPI GGTGA 1 cut(s) 202
AsuII TTCGAA 1 cut(s) 306
AvaII GGWCC 1 cut(s) 827
AvrII CCTAGG 1 cut(s) 1252
BanII GRGCYC 2 cut(s) 252, 528
BauI CACGAG 1 cut(s) 971
BbsI GAAGAC 1 cut(s) 1313
Bbv12I GWGCWC 2 cut(s) 252, 528
BbvI GCAGC 5 cut(s) 523, 615, 847, 993, 1158
BccI CCATC 3 cut(s) 404, 660, 1085
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BciT130I CCWGG 1 cut(s) 834
BclI TGATCA 3 cut(s) 255, 1383, 1474
BcoDI GTCTC 3 cut(s) 377, 581, 698
BfaI CTAG 4 cut(s) 351, 492, 1157, 1253
BfmI CTRYAG 1 cut(s) 1301
BisI GCNGC 5 cut(s) 512, 629, 861, 1007, 1172
BlnI CCTAGG 1 cut(s) 1252
BlsI GCNGC 5 cut(s) 513, 630, 862, 1008, 1173
BmcAI AGTACT 2 cut(s) 173, 289
Bme1390I CCNGG 1 cut(s) 834
Bme18I GGWCC 1 cut(s) 827
BmgBI CACGTC 1 cut(s) 1198
BmgT120I GGNCC 1 cut(s) 827
BmrFI CCNGG 1 cut(s) 834
BmsI GCATC 4 cut(s) 553, 598, 1266, 1348
BoxI GACNNNNGTC 1 cut(s) 1313
BpiI GAAGAC 1 cut(s) 1313
BpmI CTGGAG 1 cut(s) 816
Bpu14I TTCGAA 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 698
BsaJI CCNNGG 4 cut(s) 277, 714, 833, 1252
Bsc4I CCNNNNNNNGG 1 cut(s) 839
Bse1I ACTGG 2 cut(s) 844, 1140
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 4 cut(s) 277, 714, 833, 1252
BseGI GGATG 6 cut(s) 11, 202, 396, 568, 848, 1363
BseLI CCNNNNNNNGG 1 cut(s) 839
BseMII CTCAG 4 cut(s) 389, 541, 714, 1056
BseNI ACTGG 2 cut(s) 844, 1140
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 5 cut(s) 523, 615, 847, 993, 1158
BsgI GTGCAG 1 cut(s) 1308
BshFI GGCC 3 cut(s) 1095, 1241, 1433
BsiHKAI GWGCWC 2 cut(s) 252, 528
BslFI GGGAC 2 cut(s) 850, 1083
BslI CCNNNNNNNGG 1 cut(s) 839
BsmAI GTCTC 3 cut(s) 377, 581, 698
BsmFI GGGAC 2 cut(s) 850, 1083
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 3 cut(s) 1095, 1241, 1433
Bso31I GGTCTC 1 cut(s) 698
Bsp119I TTCGAA 1 cut(s) 306
Bsp1286I GDGCHC 2 cut(s) 252, 528
Bsp1407I TGTACA 1 cut(s) 367
Bsp143I GATC 7 cut(s) 59, 177, 233, 255, 734, 1383, 1474
Bsp19I CCATGG 2 cut(s) 277, 714
BspANI GGCC 3 cut(s) 1095, 1241, 1433
BspCNI CTCAG 4 cut(s) 388, 540, 715, 1055
BspHI TCATGA 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 1305
BspPI GGATC 1 cut(s) 172
BspQI GCTCTTC 1 cut(s) 1332
BspT104I TTCGAA 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 698
BsrGI TGTACA 1 cut(s) 367
BsrI ACTGG 2 cut(s) 844, 1140
BssECI CCNNGG 4 cut(s) 277, 714, 833, 1252
BssMI GATC 7 cut(s) 59, 177, 233, 255, 734, 1383, 1474
BssSI CACGAG 1 cut(s) 971
BssT1I CCWWGG 3 cut(s) 277, 714, 1252
Bst2BI CACGAG 1 cut(s) 971
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 2 cut(s) 777, 1485
Bst6I CTCTTC 6 cut(s) 725, 931, 1110, 1332, 1343, 1437
BstAUI TGTACA 1 cut(s) 367
BstBI TTCGAA 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 948
BstDEI CTNAG 5 cut(s) 375, 387, 527, 723, 1042
BstDSI CCRYGG 2 cut(s) 277, 714
BstF5I GGATG 6 cut(s) 11, 202, 396, 568, 848, 1363
BstKTI GATC 7 cut(s) 62, 180, 236, 258, 737, 1386, 1477
BstMAI GTCTC 3 cut(s) 377, 581, 698
BstMBI GATC 7 cut(s) 59, 177, 233, 255, 734, 1383, 1474
BstMWI GCNNNNNNNGC 6 cut(s) 325, 866, 907, 1331, 1367, 1376
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 3 cut(s) 34, 1195, 1207
BstPAI GACNNNNGTC 1 cut(s) 1313
BstSCI CCNGG 1 cut(s) 832
BstSFI CTRYAG 1 cut(s) 1301
BstV1I GCAGC 5 cut(s) 523, 615, 847, 993, 1158
BstV2I GAAGAC 1 cut(s) 1313
BstXI CCANNNNNNTGG 2 cut(s) 22, 715
BsuRI GGCC 3 cut(s) 1095, 1241, 1433
BtgI CCRYGG 2 cut(s) 277, 714
BtrI CACGTC 1 cut(s) 1198
BtsCI GGATG 6 cut(s) 11, 202, 396, 568, 848, 1363
Cac8I GCNNGC 1 cut(s) 948
CaiI CAGNNNCTG 1 cut(s) 839
CciI TCATGA 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 827
Csp6I GTAC 3 cut(s) 172, 288, 368
CviQI GTAC 3 cut(s) 172, 288, 368
DdeI CTNAG 5 cut(s) 375, 387, 527, 723, 1042
DpnI GATC 7 cut(s) 61, 179, 235, 257, 736, 1385, 1476
DpnII GATC 7 cut(s) 59, 177, 233, 255, 734, 1383, 1474
DrdI GACNNNNNNGTC 1 cut(s) 1196
DseDI GACNNNNNNGTC 1 cut(s) 1196
Eam1104I CTCTTC 6 cut(s) 725, 931, 1110, 1332, 1343, 1437
EarI CTCTTC 6 cut(s) 725, 931, 1110, 1332, 1343, 1437
Ecl136II GAGCTC 2 cut(s) 250, 526
Eco130I CCWWGG 3 cut(s) 277, 714, 1252
Eco24I GRGCYC 2 cut(s) 252, 528
Eco31I GGTCTC 1 cut(s) 698
Eco32I GATATC 1 cut(s) 918
Eco47I GGWCC 1 cut(s) 827
Eco53kI GAGCTC 2 cut(s) 250, 526
Eco57I CTGAAG 2 cut(s) 297, 899
EcoICRI GAGCTC 2 cut(s) 250, 526
EcoRII CCWGG 1 cut(s) 832
EcoRV GATATC 1 cut(s) 918
EcoT14I CCWWGG 3 cut(s) 277, 714, 1252
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 2 cut(s) 252, 528
ErhI CCWWGG 3 cut(s) 277, 714, 1252
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FaqI GGGAC 2 cut(s) 850, 1083
FauNDI CATATG 1 cut(s) 1219
FbaI TGATCA 3 cut(s) 255, 1383, 1474
Fnu4HI GCNGC 5 cut(s) 512, 629, 861, 1007, 1172
FokI GGATG 5 cut(s) 189, 383, 575, 835, 1370
FriOI GRGCYC 2 cut(s) 252, 528
Fsp4HI GCNGC 5 cut(s) 512, 629, 861, 1007, 1172
FspBI CTAG 4 cut(s) 351, 492, 1157, 1253
GluI GCNGC 5 cut(s) 512, 629, 861, 1007, 1172
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 3 cut(s) 1095, 1241, 1433
HincII GTYRAC 1 cut(s) 1488
HindII GTYRAC 1 cut(s) 1488
HindIII AAGCTT 2 cut(s) 309, 1377
HinfI GANTC 5 cut(s) 354, 441, 719, 1040, 1122
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 1201, 1488
Hpy188I TCNGA 9 cut(s) 40, 316, 378, 530, 649, 724, 879, 922, 1045
Hpy188III TCNNGA 7 cut(s) 160, 253, 475, 683, 703, 973, 1179
Hpy8I GTNNAC 2 cut(s) 1201, 1488
HpyAV CCTTC 6 cut(s) 354, 431, 789, 1404, 1408, 1462
HpyCH4III ACNGT 2 cut(s) 777, 1485
HpyCH4IV ACGT 1 cut(s) 1197
HpyF10VI GCNNNNNNNGC 6 cut(s) 325, 866, 907, 1331, 1367, 1376
HpyF3I CTNAG 5 cut(s) 375, 387, 527, 723, 1042
HpySE526I ACGT 1 cut(s) 1197
Ksp22I TGATCA 3 cut(s) 255, 1383, 1474
Kzo9I GATC 7 cut(s) 59, 177, 233, 255, 734, 1383, 1474
LguI GCTCTTC 1 cut(s) 1332
Lsp1109I GCAGC 5 cut(s) 523, 615, 847, 993, 1158
LweI GCATC 4 cut(s) 553, 598, 1266, 1348
MaeI CTAG 4 cut(s) 351, 492, 1157, 1253
MaeII ACGT 1 cut(s) 1197
MaeIII GTNAC 2 cut(s) 1142, 1315
MalI GATC 7 cut(s) 61, 179, 235, 257, 736, 1385, 1476
MboI GATC 7 cut(s) 59, 177, 233, 255, 734, 1383, 1474
MfeI CAATTG 1 cut(s) 998
MhlI GDGCHC 2 cut(s) 252, 528
MlyI GAGTC 3 cut(s) 348, 450, 1034
MmeI TCCRAC 1 cut(s) 205
Mph1103I ATGCAT 1 cut(s) 36
MroXI GAANNNNTTC 1 cut(s) 776
MseI TTAA 3 cut(s) 765, 932, 1452
MslI CAYNNNNRTG 5 cut(s) 20, 39, 257, 713, 971
MspA1I CMGCKG 2 cut(s) 242, 448
MspR9I CCNGG 1 cut(s) 834
MunI CAATTG 1 cut(s) 998
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 1 cut(s) 834
MwoI GCNNNNNNNGC 6 cut(s) 325, 866, 907, 1331, 1367, 1376
NcoI CCATGG 2 cut(s) 277, 714
NdeI CATATG 1 cut(s) 1219
NdeII GATC 7 cut(s) 59, 177, 233, 255, 734, 1383, 1474
NmuCI GTSAC 2 cut(s) 1142, 1315
NsiI ATGCAT 1 cut(s) 36
NspI RCATGY 3 cut(s) 34, 1195, 1207
NspV TTCGAA 1 cut(s) 306
OliI CACNNNNGTG 1 cut(s) 20
PagI TCATGA 1 cut(s) 252
PciI ACATGT 1 cut(s) 1203
PciSI GCTCTTC 1 cut(s) 1332
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 776
PfeI GAWTC 2 cut(s) 719, 1122
PflMI CCANNNNNTGG 1 cut(s) 839
PkrI GCNGC 5 cut(s) 513, 630, 862, 1008, 1173
PleI GAGTC 3 cut(s) 348, 449, 1034
PpsI GAGTC 3 cut(s) 348, 449, 1034
PscI ACATGT 1 cut(s) 1203
PshAI GACNNNNGTC 1 cut(s) 1313
Psp124BI GAGCTC 2 cut(s) 252, 528
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspPI GGNCC 1 cut(s) 827
PstI CTGCAG 1 cut(s) 1305
PstNI CAGNNNCTG 1 cut(s) 839
PvuII CAGCTG 2 cut(s) 242, 448
RsaI GTAC 3 cut(s) 173, 289, 369
RsaNI GTAC 3 cut(s) 172, 288, 368
RseI CAYNNNNRTG 5 cut(s) 20, 39, 257, 713, 971
SacI GAGCTC 2 cut(s) 252, 528
SapI GCTCTTC 1 cut(s) 1332
SaqAI TTAA 3 cut(s) 765, 932, 1452
SatI GCNGC 5 cut(s) 512, 629, 861, 1007, 1172
Sau3AI GATC 7 cut(s) 59, 177, 233, 255, 734, 1383, 1474
Sau96I GGNCC 1 cut(s) 827
ScaI AGTACT 2 cut(s) 173, 289
SchI GAGTC 3 cut(s) 348, 450, 1034
ScrFI CCNGG 1 cut(s) 834
SduI GDGCHC 2 cut(s) 252, 528
SfaNI GCATC 4 cut(s) 553, 598, 1266, 1348
SfcI CTRYAG 1 cut(s) 1301
SfuI TTCGAA 1 cut(s) 306
SinI GGWCC 1 cut(s) 827
SmiMI CAYNNNNRTG 5 cut(s) 20, 39, 257, 713, 971
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SspMI CTAG 4 cut(s) 351, 492, 1157, 1253
SstI GAGCTC 2 cut(s) 252, 528
StyD4I CCNGG 1 cut(s) 832
StyI CCWWGG 3 cut(s) 277, 714, 1252
TaaI ACNGT 2 cut(s) 777, 1485
TaiI ACGT 1 cut(s) 1200
TaqI TCGA 3 cut(s) 306, 684, 702
TatI WGTACW 3 cut(s) 171, 287, 367
TfiI GAWTC 2 cut(s) 719, 1122
Tru1I TTAA 3 cut(s) 765, 932, 1452
Tru9I TTAA 3 cut(s) 765, 932, 1452
TseFI GTSAC 2 cut(s) 1142, 1315
TseI GCWGC 5 cut(s) 511, 628, 860, 1006, 1171
Tsp45I GTSAC 2 cut(s) 1142, 1315
TspDTI ATGAA 9 cut(s) 57, 84, 191, 450, 617, 1361, 1418, 1437, 1455
Van91I CCANNNNNTGG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 827
XceI RCATGY 3 cut(s) 34, 1195, 1207
XmaJI CCTAGG 1 cut(s) 1252
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 4 cut(s) 351, 492, 1157, 1253
ZrmI AGTACT 2 cut(s) 173, 289
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.